Experiment set8IT022 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 10mM L-Tyrosine

200 most important genes:

  gene name fitness t score description  
MMP_RS00300 -5.0 -1.3 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06350 -4.6 -8.1 HesA/MoeB/ThiF family protein compare
MMP_RS07345 -4.3 -9.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS06680 -4.2 -17.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06685 -4.1 -20.3 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06355 -4.0 -5.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06700 -3.9 -16.9 hypothetical protein compare
MMP_RS03015 -3.8 -12.3 GTP 3' 8-cyclase MoaA compare
MMP_RS05515 -3.8 -15.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS05500 -3.7 -10.0 2-isopropylmalate synthase compare
MMP_RS07635 -3.7 -15.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01175 -3.6 -9.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06345 -3.6 -16.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS08165 -3.3 -4.9 phosphoglycerate dehydrogenase compare
MMP_RS06715 -3.3 -20.7 cache domain-containing protein compare
MMP_RS06400 -3.1 -2.9 4Fe-4S binding protein compare
MMP_RS06720 -3.0 -9.9 response regulator transcription factor compare
MMP_RS03435 -3.0 -3.6 ketol-acid reductoisomerase compare
MMP_RS01500 -3.0 -5.5 CBS domain-containing protein compare
MMP_RS03450 -2.9 -4.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS02010 -2.8 -13.0 PHP domain-containing protein compare
MMP_RS01455 -2.7 -11.5 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06375 -2.7 -8.3 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06705 -2.7 -11.4 formate/nitrite transporter family protein compare
MMP_RS03035 -2.7 -7.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07845 -2.7 -3.9 LL-diaminopimelate aminotransferase compare
MMP_RS08745 -2.7 -8.9 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS04605 -2.7 -8.7 cobalt ECF transporter T component CbiQ compare
MMP_RS01795 -2.7 -2.8 methanogenesis marker 6 protein compare
MMP_RS04215 -2.7 -12.3 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS02355 -2.7 -5.9 30S ribosomal protein S27ae compare
MMP_RS07365 -2.7 -14.7 2-phosphoglycerate kinase compare
MMP_RS00685 -2.6 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05930 -2.5 -3.4 3-isopropylmalate dehydratase large subunit compare
MMP_RS07445 -2.5 -8.4 helix-turn-helix domain-containing protein compare
MMP_RS01005 -2.5 -2.6 riboflavin synthase compare
MMP_RS06270 -2.5 -5.5 TIGR00300 family protein compare
MMP_RS07185 -2.5 -13.3 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06105 -2.4 -8.8 hydrogenase maturation peptidase HycI compare
MMP_RS04900 -2.4 -19.8 hypothetical protein compare
MMP_RS03640 -2.4 -5.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07525 -2.4 -10.3 4Fe-4S binding protein compare
MMP_RS04615 -2.4 -4.2 PDGLE domain-containing protein compare
MMP_RS06175 -2.3 -9.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS02235 -2.3 -9.7 CBS domain-containing protein compare
MMP_RS04620 -2.3 -13.8 cobalt transporter CbiM compare
MMP_RS05555 -2.3 -2.3 DUF4040 domain-containing protein compare
MMP_RS02340 -2.3 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS09020 -2.2 -3.0 hypothetical protein compare
MMP_RS01020 -2.2 -2.0 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05425 -2.2 -7.4 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS08820 -2.2 -6.2 hypothetical protein compare
MMP_RS06295 -2.1 -8.0 methanogenesis marker 14 protein compare
MMP_RS00695 -2.1 -2.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05875 -2.1 -9.8 hydroxyethylthiazole kinase compare
MMP_RS03025 -2.0 -7.9 molybdenum cofactor guanylyltransferase compare
MMP_RS08460 -2.0 -3.3 proteasome-activating nucleotidase compare
MMP_RS01545 -2.0 -1.9 CBS domain-containing protein compare
MMP_RS08790 -2.0 -3.4 translation initiation factor IF-2 subunit alpha compare
MMP_RS00040 -2.0 -6.6 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS01265 -2.0 -2.4 hypothetical protein compare
MMP_RS01755 -1.9 -2.5 DUF2097 domain-containing protein compare
MMP_RS07735 -1.9 -1.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS02195 -1.9 -6.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08720 -1.9 -2.2 4Fe-4S binding protein compare
MMP_RS01985 -1.9 -8.9 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS07575 -1.8 -7.3 RNA ligase partner protein compare
MMP_RS08330 -1.8 -5.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS07630 -1.8 -2.6 ATP-binding cassette domain-containing protein compare
MMP_RS06340 -1.8 -7.8 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05765 -1.8 -7.6 M42 family metallopeptidase compare
MMP_RS05265 -1.8 -2.4 2-isopropylmalate synthase compare
MMP_RS06285 -1.8 -3.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS03315 -1.7 -1.8 ferrous iron transport protein A compare
MMP_RS01220 -1.7 -7.5 hypothetical protein compare
MMP_RS00620 -1.7 -8.3 4Fe-4S binding protein compare
MMP_RS02280 -1.7 -1.4 DUF211 domain-containing protein compare
MMP_RS06730 -1.7 -2.3 phosphopantothenate/pantothenate synthetase compare
MMP_RS05085 -1.7 -10.5 AAA family ATPase compare
MMP_RS03600 -1.6 -2.9 triose-phosphate isomerase compare
MMP_RS08320 -1.6 -5.6 molybdopterin molybdotransferase MoeA compare
MMP_RS05095 -1.6 -6.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS01195 -1.6 -2.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS02240 -1.6 -4.7 methanogenesis marker 7 protein compare
MMP_RS07730 -1.5 -2.3 pyruvate synthase subunit beta compare
MMP_RS03960 -1.5 -1.7 hypothetical protein compare
MMP_RS03205 -1.5 -2.1 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08940 -1.5 -1.6 MetS family NSS transporter small subunit compare
MMP_RS06120 -1.5 -2.9 UPF0147 family protein compare
MMP_RS04780 -1.5 -4.1 ribonuclease P compare
MMP_RS07005 -1.5 -0.9 4Fe-4S binding protein compare
MMP_RS01800 -1.5 -4.2 TIGR00303 family protein compare
MMP_RS01325 -1.5 -2.6 dihydroneopterin aldolase family protein compare
MMP_RS05540 -1.5 -3.1 hypothetical protein compare
MMP_RS05100 -1.5 -11.1 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS05060 -1.4 -7.4 AAA family ATPase compare
MMP_RS01610 -1.4 -4.8 hypothetical protein compare
MMP_RS00295 -1.4 -2.2 gamma carbonic anhydrase family protein compare
MMP_RS05055 -1.4 -10.3 DUF166 domain-containing protein compare
MMP_RS06865 -1.4 -1.4 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS05080 -1.4 -8.7 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS01365 -1.4 -4.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS04870 -1.3 -5.6 TIGR02253 family HAD-type hydrolase compare
MMP_RS05075 -1.3 -11.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS09055 -1.3 -1.6 CAP domain-containing protein compare
MMP_RS08715 -1.3 -2.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS00115 -1.3 -7.3 radical SAM protein compare
MMP_RS07600 -1.3 -2.9 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01380 -1.3 -4.8 PHP domain-containing protein compare
MMP_RS00895 -1.3 -2.7 hypothetical protein compare
MMP_RS02885 -1.3 -9.8 molybdopterin biosynthesis protein compare
MMP_RS05245 -1.3 -8.6 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS07555 -1.3 -1.1 monovalent cation/H+ antiporter subunit E compare
MMP_RS05850 -1.3 -2.6 Ldh family oxidoreductase compare
MMP_RS05090 -1.2 -5.7 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS07535 -1.2 -7.5 4Fe-4S binding protein compare
MMP_RS05070 -1.2 -6.4 4Fe-4S dicluster domain-containing protein compare
MMP_RS02345 -1.2 -3.6 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06975 -1.2 -2.1 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS05430 -1.2 -4.6 TIGR00288 family NYN domain-containing protein compare
MMP_RS03485 -1.2 -3.8 TIGR00267 family protein compare
MMP_RS04585 -1.2 -6.7 AIR synthase related protein compare
MMP_RS04790 -1.2 -6.9 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS00110 -1.2 -3.4 hypothetical protein compare
MMP_RS00130 -1.2 -1.4 nickel-responsive transcriptional regulator NikR compare
MMP_RS06925 -1.2 -2.3 ribonuclease VapC4 compare
MMP_RS04775 -1.1 -2.7 adenosylhomocysteinase compare
MMP_RS02800 -1.1 -3.4 nucleotidyltransferase domain-containing protein compare
MMP_RS05920 -1.1 -0.7 50S ribosomal protein L37e compare
MMP_RS07545 -1.1 -1.6 HTH domain-containing protein compare
MMP_RS04875 -1.1 -3.7 energy-converting hydrogenase B subunit P compare
MMP_RS06840 -1.1 -1.2 DNA-directed RNA polymerase subunit N compare
MMP_RS03475 -1.1 -0.9 hypothetical protein compare
MMP_RS02135 -1.1 -3.3 DUF5612 domain-containing protein compare
MMP_RS00455 -1.0 -5.2 orotate phosphoribosyltransferase-like protein compare
MMP_RS01240 -1.0 -1.2 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS00515 -1.0 -1.1 DUF655 domain-containing protein compare
MMP_RS01720 -1.0 -1.3 replication factor C large subunit compare
MMP_RS08210 -1.0 -1.7 phosphatidylglycerophosphatase A compare
MMP_RS01075 -1.0 -2.0 hypothetical protein compare
MMP_RS01830 -1.0 -1.2 tRNA-Val compare
MMP_RS07200 -1.0 -4.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08645 -1.0 -4.6 UPF0179 family protein compare
MMP_RS00555 -0.9 -3.8 MFS transporter compare
MMP_RS04125 -0.9 -3.1 TetR/AcrR family transcriptional regulator compare
MMP_RS07380 -0.9 -2.0 transcription elongation factor Spt5 compare
MMP_RS06020 -0.9 -2.9 archaeoflavoprotein AfpA compare
MMP_RS02165 -0.9 -3.8 tRNA-dihydrouridine synthase compare
MMP_RS08635 -0.9 -1.6 UbiA family prenyltransferase compare
MMP_RS07625 -0.9 -1.9 cobalt ECF transporter T component CbiQ compare
MMP_RS07605 -0.9 -2.7 diadenylate cyclase compare
MMP_RS02190 -0.9 -2.1 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS08300 -0.9 -0.9 metal-sulfur cluster assembly factor compare
MMP_RS06930 -0.9 -5.7 MBL fold metallo-hydrolase compare
MMP_RS00305 -0.9 -1.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS04710 -0.9 -1.7 hypothetical protein compare
MMP_RS01445 -0.9 -4.8 hypothetical protein compare
MMP_RS01085 -0.9 -1.8 hypothetical protein compare
MMP_RS01700 -0.9 -0.6 dihydroxy-acid dehydratase compare
MMP_RS01745 -0.9 -3.5 AMP phosphorylase compare
MMP_RS08435 -0.8 -1.7 Era-like GTP-binding protein compare
MMP_RS05105 -0.8 -5.4 thymidylate synthase compare
MMP_RS03520 -0.8 -1.1 YwbE family protein compare
MMP_RS01440 -0.8 -2.9 NAAT family transporter compare
MMP_RS07860 -0.8 -0.9 hypothetical protein compare
MMP_RS05845 -0.8 -2.0 tRNA-intron lyase compare
MMP_RS06885 -0.8 -1.8 50S ribosome-binding GTPase compare
MMP_RS08725 -0.8 -1.5 Ni/Fe hydrogenase subunit alpha compare
MMP_RS03145 -0.8 -3.8 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07960 -0.8 -3.3 sugar phosphate isomerase/epimerase compare
MMP_RS08650 -0.7 -1.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06625 -0.7 -1.6 DNA primase compare
MMP_RS01250 -0.7 -2.8 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS06475 -0.7 -2.8 FAD-dependent oxidoreductase compare
MMP_RS06200 -0.7 -4.1 M24 family metallopeptidase compare
MMP_RS04255 -0.7 -2.9 coenzyme F420 hydrogenase subunit beta compare
MMP_RS07720 -0.7 -4.4 4Fe-4S binding protein compare
MMP_RS03555 -0.7 -3.9 transcriptional regulator compare
MMP_RS03580 -0.7 -1.9 signal recognition particle-docking protein FtsY compare
MMP_RS02930 -0.7 -2.0 class I SAM-dependent methyltransferase compare
MMP_RS02900 -0.7 -0.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS04955 -0.7 -2.4 DNA topoisomerase I compare
MMP_RS06855 -0.7 -5.3 hypothetical protein compare
MMP_RS00120 -0.7 -3.1 LysR family transcriptional regulator compare
MMP_RS07350 -0.7 -1.5 preprotein translocase subunit Sec61beta compare
MMP_RS07710 -0.7 -2.8 cell division protein FtsZ compare
MMP_RS01665 -0.7 -1.7 DUF2111 domain-containing protein compare
MMP_RS02175 -0.6 -0.7 DUF1611 domain-containing protein compare
MMP_RS03250 -0.6 -1.8 MJ1244 family protein compare
MMP_RS00720 -0.6 -3.1 metal-dependent hydrolase compare
MMP_RS07615 -0.6 -2.3 energy-coupling factor ABC transporter permease compare
MMP_RS01960 -0.6 -0.7 hypothetical protein compare
MMP_RS04695 -0.6 -2.9 selenide water dikinase SelD compare
MMP_RS01600 -0.6 -1.7 50S ribosomal protein L15e compare
MMP_RS00985 -0.6 -2.5 CDC48 family AAA ATPase compare
MMP_RS08200 -0.6 -4.6 archaeosine synthase subunit alpha compare
MMP_RS07090 -0.6 -3.7 tRNA (adenine-N1)-methyltransferase compare
MMP_RS08760 -0.6 -0.9 hypothetical protein compare
MMP_RS05445 -0.6 -2.8 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS06485 -0.6 -0.8 zinc ribbon domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 L-tyrosine disodium salt across organisms