Experiment set8IT022 for Burkholderia phytofirmans PsJN

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Deoxyribonucleic acid from herring sperm 10 mg/mL carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS02940 +5.0 21.6 adenine phosphoribosyltransferase conserved
BPHYT_RS13890 +3.7 16.8 RpiR family transcriptional regulator compare
BPHYT_RS14855 +3.4 6.9 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS16090 +3.4 2.7 hypothetical protein compare
BPHYT_RS03555 +3.4 10.5 glutamine-synthetase adenylyltransferase conserved
BPHYT_RS36300 +3.1 13.3 hypothetical protein compare
BPHYT_RS33580 +3.1 9.8 geranyltranstransferase compare
BPHYT_RS22730 +3.0 10.4 serine/threonine kinase compare
BPHYT_RS15455 +2.9 7.7 hypothetical protein compare
BPHYT_RS16245 +2.7 10.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS26965 +2.7 2.6 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS17085 +2.3 8.6 hypoxanthine phosphoribosyltransferase compare
BPHYT_RS15450 +2.3 9.8 chromosome partitioning protein compare
BPHYT_RS16255 +2.3 5.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS09445 +2.1 4.0 trigger factor compare
BPHYT_RS32395 +2.1 1.9 hypothetical protein compare
BPHYT_RS01455 +2.0 2.2 peptide deformylase compare
BPHYT_RS17100 +2.0 7.7 RNA pyrophosphohydrolase compare
BPHYT_RS27865 +1.9 1.8 ATPase compare
BPHYT_RS28360 +1.9 2.1 carboxymuconolactone decarboxylase compare
BPHYT_RS10135 +1.9 1.8 hypothetical protein compare
BPHYT_RS33845 +1.8 3.7 bacteriocin production protein compare
BPHYT_RS17240 +1.8 1.6 cell division protein FtsW compare
BPHYT_RS23230 +1.8 2.3 histidine kinase compare
BPHYT_RS14245 +1.7 2.2 membrane protein compare
BPHYT_RS24315 +1.7 1.8 phosphoribosyltransferase compare
BPHYT_RS33920 +1.6 6.6 type II citrate synthase compare
BPHYT_RS23395 +1.6 2.4 glycosyl transferase compare
BPHYT_RS08615 +1.6 2.0 hypothetical protein compare
BPHYT_RS16665 +1.5 2.7 peroxiredoxin compare
BPHYT_RS19325 +1.5 2.5 glycine cleavage system H protein compare
BPHYT_RS29745 +1.5 3.9 phosphonopyruvate decarboxylase compare
BPHYT_RS28025 +1.5 1.8 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS14880 +1.5 3.4 integration host factor subunit beta compare
BPHYT_RS29945 +1.5 2.3 histidine kinase compare
BPHYT_RS20280 +1.5 2.7 hypothetical protein compare
BPHYT_RS36555 +1.5 7.8 hypothetical protein compare
BPHYT_RS05235 +1.5 2.0 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS36420 +1.5 2.9 hypothetical protein compare
BPHYT_RS15575 +1.5 5.1 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
BPHYT_RS14185 +1.5 3.4 transcription elongation factor GreA compare
BPHYT_RS34640 +1.5 2.3 TetR family transcriptional regulator compare
BPHYT_RS20070 +1.4 6.8 hypothetical protein compare
BPHYT_RS05960 +1.4 5.0 endoribonuclease L-PSP compare
BPHYT_RS36220 +1.4 0.7 hypothetical protein compare
BPHYT_RS36365 +1.4 2.5 hypothetical protein compare
BPHYT_RS12520 +1.4 2.9 nicotinate phosphoribosyltransferase conserved
BPHYT_RS17520 +1.4 4.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS20905 +1.4 1.7 hypothetical protein compare
BPHYT_RS13185 +1.4 2.9 2,4-dienoyl-CoA reductase compare
BPHYT_RS25875 +1.4 1.5 type III secretion protein compare
BPHYT_RS11765 +1.4 1.5 polyamine ABC transporter permease compare
BPHYT_RS03280 +1.4 2.4 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS16180 +1.3 1.0 TetR family transcriptional regulator compare
BPHYT_RS36565 +1.3 4.6 hypothetical protein compare
BPHYT_RS05065 +1.3 2.3 DNA mismatch repair protein MutS compare
BPHYT_RS18590 +1.3 1.1 hypothetical protein compare
BPHYT_RS08715 +1.3 2.5 adenylyl-sulfate kinase compare
BPHYT_RS15710 +1.3 1.9 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS25780 +1.3 1.5 DeoR faimly transcriptional regulator compare
BPHYT_RS02150 +1.2 2.9 biotin synthase compare
BPHYT_RS22710 +1.2 2.4 XRE family transcriptional regulator compare
BPHYT_RS03400 +1.2 1.1 ATP-dependent DNA helicase RecG compare
BPHYT_RS03330 +1.2 3.3 hypothetical protein compare
BPHYT_RS26490 +1.2 1.3 hypothetical protein compare
BPHYT_RS30140 +1.2 1.5 3-methylitaconate isomerase compare
BPHYT_RS16815 +1.2 2.0 ureidoglycolate hydrolase compare
BPHYT_RS27655 +1.2 1.7 potassium transporter compare
BPHYT_RS29965 +1.2 5.7 amidase compare
BPHYT_RS08060 +1.2 5.6 ribosome maturation factor RimP compare
BPHYT_RS05905 +1.2 1.1 hypothetical protein compare
BPHYT_RS27405 +1.2 2.4 aldehyde dehydrogenase compare
BPHYT_RS23990 +1.2 0.9 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS11655 +1.2 2.0 chromosome partitioning protein ParB compare
BPHYT_RS01465 +1.2 7.7 lysine transporter LysE conserved
BPHYT_RS21235 +1.2 4.0 hypothetical protein compare
BPHYT_RS18655 +1.2 2.6 3-oxoacyl-ACP synthase compare
BPHYT_RS12900 +1.2 1.5 transposase compare
BPHYT_RS14670 +1.2 1.2 hypothetical protein compare
BPHYT_RS21240 +1.1 7.5 LuxR family transcriptional regulator compare
BPHYT_RS04385 +1.1 3.2 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS15260 +1.1 2.1 chorismate mutase compare
BPHYT_RS00530 +1.1 1.4 hypothetical protein compare
BPHYT_RS11895 +1.1 2.1 peroxiredoxin compare
BPHYT_RS31690 +1.1 2.8 hypothetical protein compare
BPHYT_RS02865 +1.1 1.9 hypothetical protein compare
BPHYT_RS22265 +1.1 1.4 hypothetical protein compare
BPHYT_RS30905 +1.1 1.8 histidine kinase compare
BPHYT_RS33980 +1.1 6.8 aconitate hydratase compare
BPHYT_RS21130 +1.1 2.6 F420-dependent oxidoreductase compare
BPHYT_RS14505 +1.1 3.2 membrane protein compare
BPHYT_RS02885 +1.1 5.9 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS31960 +1.1 2.4 hypothetical protein compare
BPHYT_RS34560 +1.1 4.3 hypothetical protein compare
BPHYT_RS06940 +1.1 2.7 peroxiredoxin compare
BPHYT_RS23950 +1.1 2.2 DMT family permease compare
BPHYT_RS24350 +1.1 1.1 hypothetical protein compare
BPHYT_RS25800 +1.1 1.2 sugar ABC transporter permease compare
BPHYT_RS30845 +1.1 2.1 polyketide cyclase compare
BPHYT_RS25165 +1.1 1.2 HTH-type transcriptional regulator BetI compare
BPHYT_RS10345 +1.1 1.0 flagellar motor protein MotB compare
BPHYT_RS16880 +1.1 0.7 malic enzyme compare
BPHYT_RS28535 +1.1 1.0 response regulator receiver compare
BPHYT_RS15075 +1.1 1.6 dihydrokaempferol 4-reductase compare
BPHYT_RS26660 +1.0 2.3 precorrin-4 C11-methyltransferase compare
BPHYT_RS18630 +1.0 2.2 allophanate hydrolase compare
BPHYT_RS36380 +1.0 3.1 phage integrase compare
BPHYT_RS30120 +1.0 1.7 heavy metal transporter compare
BPHYT_RS23525 +1.0 1.3 hypothetical protein compare
BPHYT_RS01120 +1.0 1.9 plasmid partitioning protein ParB compare
BPHYT_RS25500 +1.0 1.1 hypothetical protein compare
BPHYT_RS30145 +1.0 4.6 aconitate hydratase compare
BPHYT_RS07835 +1.0 1.8 muconolactone delta-isomerase compare
BPHYT_RS26355 +1.0 1.0 hypothetical protein compare
BPHYT_RS04625 +1.0 2.4 urea ABC transporter ATP-binding protein compare
BPHYT_RS20725 +1.0 1.0 histidine kinase compare
BPHYT_RS15095 +1.0 5.3 adenine deaminase conserved
BPHYT_RS21110 +1.0 4.0 FO synthase compare
BPHYT_RS30465 +1.0 1.3 short-chain dehydrogenase compare
BPHYT_RS02155 +1.0 1.9 dithiobiotin synthetase compare
BPHYT_RS32860 +1.0 0.9 hypothetical protein compare
BPHYT_RS16175 +1.0 1.3 hemolysin D compare
BPHYT_RS28245 +1.0 1.6 MFS transporter compare
BPHYT_RS00790 +1.0 1.9 conjugal transfer protein TraF compare
BPHYT_RS07050 +1.0 0.9 membrane protein compare
BPHYT_RS11825 +1.0 1.3 cytosine deaminase compare
BPHYT_RS36050 +1.0 3.2 hypothetical protein compare
BPHYT_RS20590 +1.0 2.1 methionine sulfoxide reductase A compare
BPHYT_RS14550 +1.0 0.8 tRNA-Asn compare
BPHYT_RS23415 +1.0 1.8 GDSL family lipase compare
BPHYT_RS11000 +1.0 1.6 glutathione S-transferase compare
BPHYT_RS25830 +1.0 2.0 sugar ABC transporter substrate-binding protein compare
BPHYT_RS08135 +1.0 1.2 hypothetical protein compare
BPHYT_RS32520 +1.0 3.4 GntR family transcriptional regulator compare
BPHYT_RS08415 +0.9 1.7 hypothetical protein compare
BPHYT_RS28980 +0.9 2.6 membrane protein compare
BPHYT_RS20055 +0.9 2.9 hypothetical protein compare
BPHYT_RS28460 +0.9 3.0 malate dehydrogenase compare
BPHYT_RS20475 +0.9 1.8 hypothetical protein compare
BPHYT_RS18865 +0.9 2.0 flagellar L-ring protein FlgH compare
BPHYT_RS21940 +0.9 1.8 hemolysin D compare
BPHYT_RS04875 +0.9 2.4 alpha-ribazole phosphatase compare
BPHYT_RS19260 +0.9 0.9 hypothetical protein compare
BPHYT_RS33070 +0.9 2.1 haloacid dehalogenase compare
BPHYT_RS22180 +0.9 3.0 hypothetical protein compare
BPHYT_RS06190 +0.9 3.0 heptosyltransferase compare
BPHYT_RS05060 +0.9 4.1 membrane protein compare
BPHYT_RS11810 +0.9 0.8 LysR family transcriptional regulator compare
BPHYT_RS06975 +0.9 1.1 glutamate racemase compare
BPHYT_RS10705 +0.9 2.1 MFS transporter compare
BPHYT_RS36410 +0.9 3.3 integrase family protein compare
BPHYT_RS06175 +0.9 1.5 LPS biosynthesis compare
BPHYT_RS10470 +0.9 1.7 hypothetical protein compare
BPHYT_RS22175 +0.9 4.9 hypothetical protein compare
BPHYT_RS29320 +0.9 1.9 histidine kinase compare
BPHYT_RS30485 +0.9 1.0 ABC transporter ATP-binding protein compare
BPHYT_RS11705 +0.9 1.3 hypothetical protein compare
BPHYT_RS30855 +0.9 2.7 sugar ABC transporter substrate-binding protein compare
BPHYT_RS17900 +0.9 1.3 hypothetical protein compare
BPHYT_RS31645 +0.9 1.9 FAD-binding protein compare
BPHYT_RS28320 +0.9 1.6 molecular chaperone DnaJ compare
BPHYT_RS17205 +0.9 1.5 peroxiredoxin compare
BPHYT_RS11410 +0.9 2.2 TetR family transcriptional regulator compare
BPHYT_RS14370 +0.9 1.3 ribonuclease III compare
BPHYT_RS33620 +0.9 4.0 transcriptional regulator compare
BPHYT_RS00270 +0.9 2.8 branched-chain amino acid ABC transporter compare
BPHYT_RS31790 +0.9 2.4 methyl-accepting chemotaxis sensory transducer compare
BPHYT_RS06335 +0.9 1.1 CopG family transcriptional regulator compare
BPHYT_RS19925 +0.9 1.5 peptidase C39 compare
BPHYT_RS17745 +0.9 3.6 toluene tolerance family protein compare
BPHYT_RS10435 +0.9 2.0 ThiJ/PfpI domain-containing protein compare
BPHYT_RS20785 +0.9 2.3 CoA-transferase compare
BPHYT_RS18580 +0.9 2.9 short-chain dehydrogenase compare
BPHYT_RS13590 +0.9 3.4 ABC transporter substrate-binding protein compare
BPHYT_RS07430 +0.9 2.1 LuxR family transcriptional regulator compare
BPHYT_RS26160 +0.9 2.0 membrane protein compare
BPHYT_RS21150 +0.8 1.7 NAD(P) transhydrogenase subunit alpha compare
BPHYT_RS22500 +0.8 1.3 transcriptional regulator compare
BPHYT_RS28620 +0.8 1.6 enoyl-CoA hydratase compare
BPHYT_RS04675 +0.8 4.2 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS06950 +0.8 3.1 LysR family transcriptional regulator compare
BPHYT_RS26260 +0.8 2.2 histidine kinase compare
BPHYT_RS24335 +0.8 2.7 toxin HipA compare
BPHYT_RS14470 +0.8 3.2 Rieske (2Fe-2S) protein compare
BPHYT_RS09465 +0.8 0.8 transcriptional regulator compare
BPHYT_RS04525 +0.8 1.1 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS11040 +0.8 0.8 GntR family transcriptional regulator compare
BPHYT_RS25070 +0.8 1.0 choline ABC transporter permease compare
BPHYT_RS22205 +0.8 1.6 hypothetical protein compare
BPHYT_RS36440 +0.8 1.6 hypothetical protein compare
BPHYT_RS35940 +0.8 2.2 hypothetical protein compare
BPHYT_RS07060 +0.8 1.8 aldo/keto reductase compare
BPHYT_RS12985 +0.8 0.7 amino acid acetyltransferase compare
BPHYT_RS22295 +0.8 0.8 LysR family transcriptional regulator compare
BPHYT_RS16515 +0.8 2.1 2-hydroxyacid dehydrogenase compare
BPHYT_RS28660 +0.8 0.9 polyvinylalcohol dehydrogenase compare
BPHYT_RS20130 +0.8 1.5 diguanylate phosphodiesterase compare
BPHYT_RS04415 +0.8 1.6 N-acylglucosamine 2-epimerase compare
BPHYT_RS00150 +0.8 2.2 DEAD/DEAH box helicase compare
BPHYT_RS28415 +0.8 1.0 hypothetical protein compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source Deoxyribonucleic acid from herring sperm in Burkholderia phytofirmans PsJN

For carbon source Deoxyribonucleic acid from herring sperm across organisms