Experiment set8IT021 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Parabanic Acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_64 -6.0 -4.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4826 -5.7 -7.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3248 -5.6 -6.1 Probable transmembrane protein compare
Pf6N2E2_3630 -5.5 -6.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3782 -5.5 -3.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4825 -5.3 -8.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_77 -5.2 -5.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2258 -4.8 -11.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3826 -4.7 -6.4 Nitrogen regulation protein NR(I) compare
Pf6N2E2_71 -4.7 -7.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4047 -4.5 -7.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3839 -4.5 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5175 -4.4 -15.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5006 -4.4 -9.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3253 -4.3 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_1186 -4.2 -7.9 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3841 -4.2 -5.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3751 -4.1 -15.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4597 -4.1 -10.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3825 -4.1 -6.2 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3611 -4.1 -2.7 HflC protein compare
Pf6N2E2_4596 -4.0 -11.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3842 -4.0 -5.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_66 -4.0 -8.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5176 -3.9 -11.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_1187 -3.9 -10.1 Probable nikkomycin biosynthesis protein, carboxylase compare
Pf6N2E2_4048 -3.9 -8.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3553 -3.8 -8.0 Urease (EC 3.5.1.5) (from data) conserved
Pf6N2E2_3752 -3.7 -20.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3072 -3.6 -13.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_5177 -3.6 -10.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3552 -3.6 -11.2 Urease accessory protein UreD conserved
Pf6N2E2_3783 -3.5 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4638 -3.5 -3.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3252 -3.5 -8.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3556 -3.4 -9.9 Urease (EC 3.5.1.5) (from data) compare
Pf6N2E2_2473 -3.4 -1.9 Major outer membrane lipoprotein I compare
Pf6N2E2_2588 -3.4 -3.7 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_4564 -3.4 -7.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4353 -3.3 -6.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3610 -3.2 -6.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_658 -3.1 -14.1 sensor histidine kinase compare
Pf6N2E2_5579 -3.0 -8.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3932 -3.0 -5.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2073 -2.9 -9.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5156 -2.8 -3.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3938 -2.8 -12.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3940 -2.7 -10.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3572 -2.7 -10.9 Urease accessory protein UreG conserved
Pf6N2E2_3570 -2.6 -5.3 Urease accessory protein UreE conserved
Pf6N2E2_4372 -2.6 -6.5 FIG00460773: hypothetical protein compare
Pf6N2E2_5299 -2.6 -8.2 Benzoate transport protein compare
Pf6N2E2_3573 -2.5 -3.2 HupE-UreJ family metal transporter compare
Pf6N2E2_3170 -2.4 -8.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2897 -2.4 -10.1 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_2574 -2.4 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_4009 -2.4 -9.8 GGDEF domain protein compare
Pf6N2E2_2074 -2.3 -1.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5242 -2.3 -2.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3571 -2.3 -3.9 Urease accessory protein UreF compare
Pf6N2E2_178 -2.2 -2.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3554 -2.2 -6.6 GCN5-related N-acetyltransferase compare
Pf6N2E2_5014 -2.1 -1.7 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2253 -2.1 -3.6 hypothetical protein compare
Pf6N2E2_63 -2.1 -3.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3984 -2.1 -8.6 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5571 -2.1 -2.1 hypothetical protein compare
Pf6N2E2_2080 -2.0 -1.6 hypothetical protein compare
Pf6N2E2_3134 -2.0 -1.1 hypothetical protein compare
Pf6N2E2_50 -2.0 -8.6 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4206 -2.0 -2.1 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1190 -2.0 -5.6 Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase compare
Pf6N2E2_2217 -1.9 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1189 -1.9 -5.6 Thioredoxin reductase (EC 1.8.1.9) compare
Pf6N2E2_1188 -1.9 -5.0 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_2218 -1.9 -5.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_1932 -1.9 -5.6 Transcriptional regulator, IclR family compare
Pf6N2E2_5527 -1.9 -2.1 Cold shock protein CspC compare
Pf6N2E2_2885 -1.9 -6.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_2514 -1.9 -5.6 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_4987 -1.8 -1.6 MaoC-like domain protein compare
Pf6N2E2_4797 -1.8 -2.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5150 -1.7 -5.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4416 -1.7 -3.2 Tyrosine recombinase XerC compare
Pf6N2E2_4803 -1.7 -1.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5666 -1.7 -7.3 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4025 -1.6 -1.9 hypothetical protein compare
Pf6N2E2_2465 -1.6 -5.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3251 -1.5 -6.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4636 -1.5 -4.5 periplasmic binding protein, putative compare
Pf6N2E2_5262 -1.5 -2.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_2863 -1.5 -4.6 Gluconate permease compare
Pf6N2E2_6065 -1.5 -2.0 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1886 -1.5 -2.7 hypothetical protein compare
Pf6N2E2_5676 -1.5 -3.9 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5111 -1.5 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2756 -1.4 -6.5 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_160 -1.4 -3.2 hypothetical protein compare
Pf6N2E2_5078 -1.4 -2.3 Carbon starvation protein A compare
Pf6N2E2_3461 -1.4 -1.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5160 -1.4 -1.5 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2646 -1.4 -1.0 FIG00953416: hypothetical protein compare
Pf6N2E2_2852 -1.3 -7.9 GGDEF domain/EAL domain protein compare
Pf6N2E2_4611 -1.3 -3.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4279 -1.3 -7.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4276 -1.3 -4.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5646 -1.3 -1.8 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_1691 -1.3 -3.0 hypothetical protein compare
Pf6N2E2_5252 -1.3 -1.6 FIG00956396: hypothetical protein compare
Pf6N2E2_4278 -1.3 -7.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2106 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_2890 -1.3 -6.7 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_3835 -1.3 -2.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5219 -1.3 -5.1 FIG140336: TPR domain protein compare
Pf6N2E2_2442 -1.2 -7.7 sensor histidine kinase/response regulator compare
Pf6N2E2_5425 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_1683 -1.2 -2.1 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_1081 -1.2 -1.8 probable membrane protein YPO3302 compare
Pf6N2E2_4824 -1.2 -3.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_1715 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_58 -1.2 -2.1 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_1656 -1.2 -2.3 hypothetical protein compare
Pf6N2E2_2010 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_942 -1.1 -2.5 Mll6465 protein compare
Pf6N2E2_5444 -1.1 -3.1 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_3349 -1.1 -2.4 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3206 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_2252 -1.1 -2.7 NreA-like protein compare
Pf6N2E2_5520 -1.1 -5.1 Sensory box histidine kinase compare
Pf6N2E2_2420 -1.1 -2.6 hypothetical protein compare
Pf6N2E2_5524 -1.1 -6.8 Outer membrane porin, OprD family compare
Pf6N2E2_4759 -1.1 -7.0 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5316 -1.1 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4277 -1.1 -5.2 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2891 -1.1 -6.3 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_613 -1.1 -1.4 lipoprotein, putative compare
Pf6N2E2_70 -1.1 -3.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3663 -1.1 -5.1 Glycosyl transferase compare
Pf6N2E2_302 -1.0 -3.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2895 -1.0 -5.0 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_5564 -1.0 -7.5 Membrane protein glpM conserved
Pf6N2E2_833 -1.0 -2.6 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_3258 -1.0 -3.0 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3677 -1.0 -7.3 Sensory box/GGDEF family protein compare
Pf6N2E2_4162 -1.0 -2.0 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_959 -1.0 -3.3 putative membrane protein compare
Pf6N2E2_1294 -1.0 -2.5 Carbon starvation protein A compare
Pf6N2E2_170 -1.0 -1.0 lipoprotein, putative compare
Pf6N2E2_3062 -1.0 -2.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2893 -1.0 -3.7 hypothetical protein compare
Pf6N2E2_1191 -1.0 -4.1 Thiaminase II (EC 3.5.99.2) compare
Pf6N2E2_3612 -1.0 -1.4 HflK protein compare
Pf6N2E2_6100 -1.0 -1.8 tRNA-Val-TAC compare
Pf6N2E2_5258 -1.0 -4.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2487 -1.0 -0.9 FIG00956090: hypothetical protein compare
Pf6N2E2_6022 -0.9 -2.1 StbE replicon stabilization toxin compare
Pf6N2E2_5190 -0.9 -4.8 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_377 -0.9 -3.1 hypothetical protein compare
Pf6N2E2_4916 -0.9 -2.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5331 -0.9 -4.7 ATPase, AFG1 family compare
Pf6N2E2_2188 -0.9 -2.7 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_5295 -0.9 -4.6 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Pf6N2E2_2477 -0.9 -1.7 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_5665 -0.9 -4.2 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_248 -0.9 -4.5 hypothetical protein compare
Pf6N2E2_3555 -0.9 -3.2 Tabtoxin resistance protein compare
Pf6N2E2_1169 -0.9 -2.3 TnpR protein compare
Pf6N2E2_3060 -0.9 -2.6 Outer membrane protein H precursor compare
Pf6N2E2_5277 -0.9 -4.7 FIG00953110: hypothetical protein compare
Pf6N2E2_818 -0.9 -3.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_99 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_4464 -0.9 -2.2 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_2219 -0.9 -1.2 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_682 -0.9 -3.6 Predicted regulator PutR for proline utilization, GntR family compare
Pf6N2E2_2892 -0.9 -5.7 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_1735 -0.9 -1.9 PhnB protein compare
Pf6N2E2_2261 -0.9 -4.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_3869 -0.8 -5.1 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_5668 -0.8 -3.2 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3524 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_5468 -0.8 -2.0 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_1870 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_5031 -0.8 -3.6 hypothetical protein compare
Pf6N2E2_1623 -0.8 -3.2 Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) compare
Pf6N2E2_3505 -0.8 -1.3 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5943 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_5840 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_2889 -0.8 -5.4 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_5730 -0.8 -2.1 FIG00954480: hypothetical protein compare
Pf6N2E2_4298 -0.8 -2.7 Uncharacterized protein ImpB compare
Pf6N2E2_3655 -0.8 -5.3 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4417 -0.8 -1.5 Protein of unknown function DUF484 compare
Pf6N2E2_3569 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_2180 -0.8 -2.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2186 -0.8 -2.4 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_5780 -0.8 -4.2 Periplasmic protease compare
Pf6N2E2_1654 -0.8 -1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2527 -0.8 -2.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2418 -0.8 -1.8 DNA-binding response regulator, LuxR family compare
Pf6N2E2_5986 -0.8 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source Parabanic Acid in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Parabanic Acid across organisms