Experiment set8IT021 for Klebsiella michiganensis M5al

Compare to:

LB with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS01115 -7.2 -4.9 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS19845 -6.8 -6.3 phosphatase compare
BWI76_RS01110 -6.0 -4.2 TDP-fucosamine acetyltransferase compare
BWI76_RS19905 -5.9 -5.8 OmpK36 porin compare
BWI76_RS09645 -5.9 -2.8 thioredoxin-disulfide reductase compare
BWI76_RS02815 -5.8 -4.0 fructose-bisphosphatase class I compare
BWI76_RS18130 -5.8 -3.1 zinc ABC transporter substrate-binding protein compare
BWI76_RS23265 -5.5 -3.5 hypothetical protein compare
BWI76_RS05260 -5.4 -2.5 chaperone compare
BWI76_RS01325 -5.3 -3.7 twin-arginine translocase subunit TatB compare
BWI76_RS06525 -5.2 -4.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS24400 -5.1 -5.0 outer membrane channel protein TolC compare
BWI76_RS25065 -4.9 -3.4 polyribonucleotide nucleotidyltransferase compare
BWI76_RS13920 -4.9 -8.1 magnesium-translocating P-type ATPase compare
BWI76_RS21070 -4.8 -3.3 outer membrane protein assembly factor BamB compare
BWI76_RS01800 -4.7 -4.6 glucose-6-phosphate isomerase compare
BWI76_RS03105 -4.6 -2.2 myo-inosose-2 dehydratase compare
BWI76_RS26570 -4.4 -3.1 anion permease compare
BWI76_RS19840 -4.4 -2.1 hypothetical protein compare
BWI76_RS18140 -4.4 -4.1 zinc ABC transporter permease compare
BWI76_RS25060 -4.3 -3.7 lipoprotein NlpI compare
BWI76_RS07475 -4.3 -2.0 DNA-binding transcriptional regulator RamA compare
BWI76_RS01330 -4.3 -4.2 twin-arginine translocase subunit TatC compare
BWI76_RS01095 -4.1 -3.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS01125 -4.1 -4.8 4-alpha-L-fucosyltransferase compare
BWI76_RS08640 -3.9 -2.6 multidrug efflux pump-associated protein, AcrZ family compare
BWI76_RS18135 -3.9 -6.0 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS05015 -3.8 -3.5 transcriptional regulator compare
BWI76_RS06780 -3.8 -7.7 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS01080 -3.7 -8.5 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS08500 -3.6 -3.5 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS17975 -3.6 -4.2 tail-specific protease compare
BWI76_RS25230 -3.4 -5.8 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS26670 -3.3 -9.3 two-component sensor histidine kinase compare
BWI76_RS00180 -3.3 -2.2 F0F1 ATP synthase subunit epsilon compare
BWI76_RS13915 -3.3 -8.6 magnesium transport protein MgtC compare
BWI76_RS09640 -3.3 -3.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS06530 -3.3 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS23885 -3.3 -2.0 2-octaprenylphenol hydroxylase compare
BWI76_RS26665 -3.2 -3.1 DNA-binding response regulator compare
BWI76_RS15115 -3.1 -3.1 MFS transporter compare
BWI76_RS04715 -3.1 -1.9 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS02530 -3.0 -2.9 tRNA dimethylallyltransferase compare
BWI76_RS26440 -3.0 -2.0 hypothetical protein compare
BWI76_RS20170 -3.0 -4.8 NADH-quinone oxidoreductase subunit F compare
BWI76_RS25220 -2.9 -3.9 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS06775 -2.8 -9.1 multidrug efflux RND transporter permease subunit compare
BWI76_RS25215 -2.8 -5.1 phospholipid-binding protein MlaC compare
BWI76_RS08495 -2.7 -5.5 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS25225 -2.6 -4.5 ABC transporter permease compare
BWI76_RS00345 -2.6 -3.6 protein disulfide oxidoreductase DsbA compare
BWI76_RS01185 -2.6 -1.8 adenylate cyclase compare
BWI76_RS01105 -2.6 -3.0 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS23240 -2.5 -1.8 exonuclease V subunit gamma compare
BWI76_RS20135 -2.5 -3.0 NADH-quinone oxidoreductase subunit M compare
BWI76_RS01135 -2.5 -5.1 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS09190 -2.5 -3.8 hypothetical protein compare
BWI76_RS20475 -2.5 -4.0 phospholipid-binding lipoprotein MlaA compare
BWI76_RS15225 -2.4 -2.5 DeoR family transcriptional regulator compare
BWI76_RS20145 -2.4 -1.9 NADH-quinone oxidoreductase subunit K compare
BWI76_RS26455 -2.4 -3.6 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS04705 -2.3 -5.7 DNA-binding transcriptional regulator FruR compare
BWI76_RS24850 -2.3 -4.0 DeoR family transcriptional regulator compare
BWI76_RS20160 -2.3 -2.5 NADH-quinone oxidoreductase subunit H compare
BWI76_RS00875 -2.3 -4.7 DNA-binding transcriptional regulator FabR compare
BWI76_RS20650 -2.3 -1.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS01090 -2.3 -3.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS20190 -2.2 -5.4 NADH-quinone oxidoreductase subunit A compare
BWI76_RS03595 -2.2 -1.9 ethanolamine utilization protein EutM compare
BWI76_RS26460 -2.1 -3.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS27310 -2.1 -6.7 glycosyltransferase compare
BWI76_RS04305 -2.1 -1.4 molecular chaperone DnaJ compare
BWI76_RS08525 -2.0 -3.4 colicin transporter compare
BWI76_RS16315 -2.0 -1.8 SirA-like protein compare
BWI76_RS06540 -2.0 -3.3 DNA-binding protein HU-beta compare
BWI76_RS20165 -2.0 -4.1 NADH-quinone oxidoreductase subunit G compare
BWI76_RS20130 -2.0 -4.2 NADH-quinone oxidoreductase subunit N compare
BWI76_RS09660 -2.0 -1.4 DNA translocase FtsK compare
BWI76_RS04525 -2.0 -1.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS20140 -1.9 -5.0 NADH-quinone oxidoreductase subunit L compare
BWI76_RS20180 -1.9 -4.6 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS24280 -1.9 -4.9 biopolymer transporter ExbB compare
BWI76_RS24900 -1.9 -1.8 DeoR family transcriptional regulator compare
BWI76_RS20155 -1.8 -1.9 NADH-quinone oxidoreductase subunit I compare
BWI76_RS27290 -1.8 -6.8 hypothetical protein compare
BWI76_RS22050 -1.8 -5.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI conserved
BWI76_RS24930 -1.8 -4.7 osmotically-inducible protein OsmY compare
BWI76_RS08720 -1.8 -1.8 imidazolonepropionase compare
BWI76_RS01210 -1.8 -1.3 tyrosine recombinase XerC compare
BWI76_RS24275 -1.8 -3.6 biopolymer transport protein ExbD compare
BWI76_RS19850 -1.8 -2.7 tRNA-Pro compare
BWI76_RS01000 -1.7 -2.8 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS00440 -1.7 -1.6 CopG family transcriptional regulator compare
BWI76_RS04100 -1.7 -3.4 peptide chain release factor 3 compare
BWI76_RS15110 -1.7 -7.6 putative excinuclease ABC subunit A compare
BWI76_RS23830 -1.7 -5.3 hypothetical protein compare
BWI76_RS11700 -1.7 -1.6 hypothetical protein compare
BWI76_RS00720 -1.7 -1.4 DNA-binding response regulator compare
BWI76_RS09530 -1.7 -1.4 hypothetical protein compare
BWI76_RS05200 -1.6 -1.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS05450 -1.6 -1.9 ribonuclease HI compare
BWI76_RS26470 -1.6 -3.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS21345 -1.6 -2.5 sigma-E factor regulatory protein RseB compare
BWI76_RS05120 -1.6 -5.9 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS01995 -1.6 -1.5 AraC family transcriptional regulator compare
BWI76_RS16355 -1.6 -1.7 electron transport complex subunit A compare
BWI76_RS22625 -1.6 -1.8 transcriptional regulator compare
BWI76_RS22055 -1.6 -6.8 ribonucleotide-diphosphate reductase conserved
BWI76_RS05835 -1.5 -1.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS16200 -1.5 -1.9 NAD(P) transhydrogenase subunit beta compare
BWI76_RS20925 -1.5 -3.1 peptidase M48 compare
BWI76_RS22060 -1.5 -7.7 ribonucleotide-diphosphate reductase subunit beta conserved
BWI76_RS09970 -1.5 -2.2 porin OmpA compare
BWI76_RS25300 -1.5 -2.7 hybrid sensor histidine kinase/response regulator compare
BWI76_RS01350 -1.5 -1.2 NAD(P)H-flavin reductase compare
BWI76_RS17400 -1.5 -1.4 transporter compare
BWI76_RS26620 -1.5 -1.2 Fe-S biogenesis protein NfuA compare
BWI76_RS11815 -1.5 -1.8 hypothetical protein compare
BWI76_RS08605 -1.4 -1.7 phosphoglyceromutase compare
BWI76_RS07380 -1.4 -1.8 hypothetical protein compare
BWI76_RS17565 -1.4 -1.2 hypothetical protein compare
BWI76_RS11275 -1.4 -5.6 sensor protein PhoQ compare
BWI76_RS17190 -1.4 -1.6 TonB system transport protein TonB compare
BWI76_RS21450 -1.4 -1.5 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS19240 -1.4 -1.6 ABC transporter substrate-binding protein compare
BWI76_RS27430 -1.4 -1.2 (p)ppGpp synthetase compare
BWI76_RS00400 -1.4 -1.2 glutamine synthetase compare
BWI76_RS16995 -1.4 -5.2 Fe-S cluster assembly protein SufB compare
BWI76_RS17720 -1.4 -0.9 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS07640 -1.3 -1.4 short chain dehydrogenase compare
BWI76_RS19115 -1.3 -3.3 outer membrane assembly protein AsmA compare
BWI76_RS05175 -1.3 -9.6 dGTPase compare
BWI76_RS01085 -1.3 -3.9 polysaccharide chain length modulation protein compare
BWI76_RS09635 -1.3 -1.8 amino acid ABC transporter ATP-binding protein compare
BWI76_RS23825 -1.3 -6.4 hypothetical protein compare
BWI76_RS24925 -1.3 -1.6 DnaA initiator-associating protein DiaA compare
BWI76_RS27165 -1.3 -2.8 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS23230 -1.3 -1.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS16510 -1.3 -1.4 transcriptional repressor PurR compare
BWI76_RS27475 -1.3 -4.8 regulatory protein GntR family protein compare
BWI76_RS23895 -1.2 -0.6 Xaa-Pro aminopeptidase compare
BWI76_RS27680 -1.2 -4.2 TetR family transcriptional regulator compare
BWI76_RS24380 -1.2 -3.8 esterase YqiA compare
BWI76_RS07780 -1.2 -1.1 hypothetical protein compare
BWI76_RS15450 -1.2 -2.0 hypothetical protein compare
BWI76_RS23325 -1.2 -1.6 hypothetical protein compare
BWI76_RS11155 -1.2 -2.0 penicillin-binding protein activator LpoB compare
BWI76_RS16965 -1.2 -1.2 murein lipoprotein compare
BWI76_RS11990 -1.2 -4.6 exoribonuclease II compare
BWI76_RS13560 -1.2 -0.9 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS12545 -1.2 -2.0 hypothetical protein compare
BWI76_RS24080 -1.2 -1.2 DUF179 domain-containing protein compare
BWI76_RS23480 -1.2 -6.7 EAL domain-containing protein compare
BWI76_RS24965 -1.2 -2.8 SCP2 domain-containing protein compare
BWI76_RS10295 -1.1 -1.2 short chain dehydrogenase/reductase family oxidoreductase compare
BWI76_RS17155 -1.1 -1.3 hypothetical protein compare
BWI76_RS14520 -1.1 -2.9 hypothetical protein compare
BWI76_RS00450 -1.1 -2.4 formate dehydrogenase accessory protein FdhE compare
BWI76_RS22640 -1.1 -1.8 hypothetical protein compare
BWI76_RS26200 -1.1 -2.4 starch synthase compare
BWI76_RS08530 -1.1 -1.4 protein TolA compare
BWI76_RS13820 -1.1 -1.5 hypothetical protein compare
BWI76_RS19460 -1.1 -1.6 lipoprotein compare
BWI76_RS16975 -1.1 -3.7 cysteine desufuration protein SufE compare
BWI76_RS21350 -1.1 -1.5 anti-RNA polymerase sigma factor SigE compare
BWI76_RS14050 -1.1 -2.0 AP endonuclease, family 2 compare
BWI76_RS10585 -1.1 -2.0 amino acid ABC transporter ATP-binding protein compare
BWI76_RS15955 -1.1 -2.7 transcriptional regulator compare
BWI76_RS01885 -1.1 -1.0 CsbD family protein compare
BWI76_RS24745 -1.1 -2.7 membrane protein compare
BWI76_RS18200 -1.1 -3.2 copper homeostasis protein CutC compare
BWI76_RS27505 -1.1 -2.3 septal ring assembly protein ZapB compare
BWI76_RS01870 -1.1 -2.6 diacylglycerol kinase compare
BWI76_RS11515 -1.1 -1.3 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS21140 -1.1 -1.1 molecular chaperone HscA compare
BWI76_RS21570 -1.1 -1.5 RnfH family protein compare
BWI76_RS08395 -1.1 -1.6 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS24290 -1.1 -2.2 membrane protein compare
BWI76_RS17000 -1.1 -2.6 Fe-S cluster assembly scaffold SufA compare
BWI76_RS20150 -1.1 -1.2 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS21375 -1.1 -0.8 autonomous glycyl radical cofactor GrcA compare
BWI76_RS27305 -1.0 -3.4 glycosyl transferase compare
BWI76_RS00480 -1.0 -2.1 hypothetical protein compare
BWI76_RS04510 -1.0 -1.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS24625 -1.0 -1.8 hypothetical protein compare
BWI76_RS24010 -1.0 -3.7 hypothetical protein compare
BWI76_RS12470 -1.0 -1.4 thiosulfate sulfurtransferase PspE compare
BWI76_RS10245 -1.0 -2.0 aspartate aminotransferase compare
BWI76_RS25870 -1.0 -1.3 elongation factor Tu compare
BWI76_RS05180 -1.0 -3.6 serine endoprotease DegQ compare
BWI76_RS05075 -1.0 -0.8 type II secretion system protein GspG compare
BWI76_RS08825 -1.0 -1.8 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS26190 -1.0 -2.0 glycerol-3-phosphate dehydrogenase compare
BWI76_RS23125 -1.0 -0.9 propanediol dehydratase small subunit compare
BWI76_RS22630 -1.0 -2.3 LysR family transcriptional regulator compare
BWI76_RS16980 -1.0 -3.1 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS14515 -1.0 -3.3 yersiniabactin-iron ABC transporter permease ATP-binding protein YbtQ compare
BWI76_RS23915 -1.0 -1.8 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS20390 -1.0 -1.6 erythronate-4-phosphate dehydrogenase compare
BWI76_RS17300 -1.0 -1.2 tRNA-Tyr compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms