Experiment set8IT021 for Klebsiella michiganensis M5al

Compare to:

LB with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

Group: supernatant
Media: LB + supernatant from Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted (0.5 x)
Culturing: Koxy_ML2, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Trenton on 28-Feb-18
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms

SEED Subsystems

Subsystem #Specific
Ribonucleotide reduction 3
Multidrug Resistance Efflux Pumps 1
Purine conversions 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
adenosine deoxyribonucleotides de novo biosynthesis II 4 4 2
guanosine deoxyribonucleotides de novo biosynthesis II 4 4 2
adenosine deoxyribonucleotides de novo biosynthesis I 2 2 1
guanosine deoxyribonucleotides de novo biosynthesis I 2 2 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) 14 14 4
superpathway of adenosine nucleotides de novo biosynthesis II 7 7 2
superpathway of guanosine nucleotides de novo biosynthesis II 8 8 2
pyrimidine deoxyribonucleotides de novo biosynthesis I 9 9 2
pyrimidine deoxyribonucleotides de novo biosynthesis III 9 8 2
superpathway of adenosine nucleotides de novo biosynthesis I 5 5 1
superpathway of guanosine nucleotides de novo biosynthesis I 6 6 1
superpathway of purine nucleotides de novo biosynthesis II 26 26 4
pyrimidine deoxyribonucleotides de novo biosynthesis IV 7 6 1
pyrimidine deoxyribonucleotides biosynthesis from CTP 8 6 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 18 18 2
superpathway of purine nucleotides de novo biosynthesis I 21 21 2
superpathway of histidine, purine, and pyrimidine biosynthesis 46 46 4
superpathway of purine nucleotide salvage 14 13 1