Experiment set8IT020 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 10mM L-Methionine

200 most important genes:

  gene name fitness t score description  
MMP_RS03015 -5.1 -14.0 GTP 3' 8-cyclase MoaA compare
MMP_RS06355 -4.8 -3.4 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07845 -4.7 -2.8 LL-diaminopimelate aminotransferase compare
MMP_RS03640 -4.4 -4.8 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03035 -4.3 -5.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06680 -4.2 -17.9 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS07345 -4.2 -9.4 glycine synthesis protein GlyXL (from data) compare
MMP_RS03435 -4.2 -2.2 ketol-acid reductoisomerase compare
MMP_RS06685 -4.1 -16.3 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07185 -4.1 -16.5 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS05515 -4.0 -10.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06350 -4.0 -8.9 HesA/MoeB/ThiF family protein compare
MMP_RS07555 -4.0 -1.0 monovalent cation/H+ antiporter subunit E compare
MMP_RS01175 -3.9 -6.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03450 -3.9 -2.7 glycine synthesis protein GlyXS (from data) compare
MMP_RS05500 -3.8 -11.6 2-isopropylmalate synthase compare
MMP_RS06175 -3.8 -10.5 winged helix-turn-helix transcriptional regulator compare
MMP_RS00295 -3.8 -2.7 gamma carbonic anhydrase family protein compare
MMP_RS09020 -3.7 -2.2 hypothetical protein compare
MMP_RS06715 -3.7 -21.6 cache domain-containing protein compare
MMP_RS06705 -3.7 -8.6 formate/nitrite transporter family protein compare
MMP_RS06345 -3.7 -14.5 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS02010 -3.7 -13.1 PHP domain-containing protein compare
MMP_RS06720 -3.6 -10.9 response regulator transcription factor compare
MMP_RS06700 -3.6 -16.8 hypothetical protein compare
MMP_RS01610 -3.6 -4.4 hypothetical protein compare
MMP_RS07635 -3.5 -8.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01830 -3.5 -2.1 tRNA-Val compare
MMP_RS01455 -3.5 -10.2 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS07365 -3.4 -16.3 2-phosphoglycerate kinase compare
MMP_RS06400 -3.4 -2.3 4Fe-4S binding protein compare
MMP_RS07630 -3.4 -2.1 ATP-binding cassette domain-containing protein compare
MMP_RS06925 -3.4 -3.8 ribonuclease VapC4 compare
MMP_RS08820 -3.4 -7.3 hypothetical protein compare
MMP_RS08790 -3.4 -3.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS06730 -3.4 -2.4 phosphopantothenate/pantothenate synthetase compare
MMP_RS00300 -3.3 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS04605 -3.3 -6.5 cobalt ECF transporter T component CbiQ compare
MMP_RS01500 -3.3 -3.2 CBS domain-containing protein compare
MMP_RS03960 -3.2 -1.5 hypothetical protein compare
MMP_RS04790 -3.2 -13.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS06975 -3.2 -2.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS05920 -3.1 -0.8 50S ribosomal protein L37e compare
MMP_RS00115 -3.1 -14.1 radical SAM protein compare
MMP_RS02355 -3.1 -3.7 30S ribosomal protein S27ae compare
MMP_RS02280 -3.1 -1.2 DUF211 domain-containing protein compare
MMP_RS02340 -3.0 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS06375 -3.0 -7.6 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS02800 -3.0 -5.5 nucleotidyltransferase domain-containing protein compare
MMP_RS02195 -3.0 -4.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08745 -3.0 -9.5 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07545 -3.0 -1.5 HTH domain-containing protein compare
MMP_RS07005 -3.0 -0.8 4Fe-4S binding protein compare
MMP_RS05265 -3.0 -2.4 2-isopropylmalate synthase compare
MMP_RS07445 -3.0 -6.0 helix-turn-helix domain-containing protein compare
MMP_RS04870 -3.0 -5.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS04215 -3.0 -10.8 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS05550 -2.9 -0.7 cation:proton antiporter compare
MMP_RS07730 -2.9 -2.4 pyruvate synthase subunit beta compare
MMP_RS03315 -2.9 -1.7 ferrous iron transport protein A compare
MMP_RS03600 -2.9 -2.9 triose-phosphate isomerase compare
MMP_RS05925 -2.9 -4.5 small nuclear ribonucleoprotein compare
MMP_RS05095 -2.9 -8.9 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS06840 -2.9 -1.2 DNA-directed RNA polymerase subunit N compare
MMP_RS04620 -2.8 -14.0 cobalt transporter CbiM compare
MMP_RS08165 -2.8 -2.8 phosphoglycerate dehydrogenase compare
MMP_RS00110 -2.8 -4.0 hypothetical protein compare
MMP_RS04585 -2.8 -13.0 AIR synthase related protein compare
MMP_RS01755 -2.8 -1.9 DUF2097 domain-containing protein compare
MMP_RS06285 -2.7 -3.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS05875 -2.7 -5.9 hydroxyethylthiazole kinase compare
MMP_RS08300 -2.7 -1.6 metal-sulfur cluster assembly factor compare
MMP_RS00040 -2.7 -4.7 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS04900 -2.7 -19.1 hypothetical protein compare
MMP_RS04615 -2.7 -4.5 PDGLE domain-containing protein compare
MMP_RS04780 -2.7 -4.1 ribonuclease P compare
MMP_RS00750 -2.6 -3.2 fumarate hydratase compare
MMP_RS05425 -2.6 -5.2 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS06105 -2.6 -8.0 hydrogenase maturation peptidase HycI compare
MMP_RS06295 -2.6 -7.9 methanogenesis marker 14 protein compare
MMP_RS01985 -2.6 -7.8 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS04710 -2.6 -2.1 hypothetical protein compare
MMP_RS06270 -2.5 -8.2 TIGR00300 family protein compare
MMP_RS07525 -2.5 -9.4 4Fe-4S binding protein compare
MMP_RS08460 -2.5 -3.6 proteasome-activating nucleotidase compare
MMP_RS00685 -2.5 -5.8 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01020 -2.5 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS08330 -2.5 -8.3 NADH-quinone oxidoreductase subunit H compare
MMP_RS05815 -2.5 -3.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS04875 -2.5 -6.0 energy-converting hydrogenase B subunit P compare
MMP_RS00305 -2.4 -1.9 phosphoribosyl-ATP diphosphatase compare
MMP_RS01005 -2.4 -1.5 riboflavin synthase compare
MMP_RS07735 -2.4 -1.1 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08720 -2.4 -2.2 4Fe-4S binding protein compare
MMP_RS00290 -2.3 -4.6 hypothetical protein compare
MMP_RS05555 -2.3 -1.6 DUF4040 domain-containing protein compare
MMP_RS01840 -2.3 -8.2 TIGR00289 family protein compare
MMP_RS08320 -2.3 -6.4 molybdopterin molybdotransferase MoeA compare
MMP_RS03475 -2.3 -1.0 hypothetical protein compare
MMP_RS01220 -2.2 -8.3 hypothetical protein compare
MMP_RS05075 -2.2 -16.2 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS03305 -2.2 -8.4 winged helix-turn-helix domain-containing protein compare
MMP_RS07580 -2.2 -4.1 DUF356 domain-containing protein compare
MMP_RS05100 -2.2 -15.5 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS05060 -2.2 -10.7 AAA family ATPase compare
MMP_RS01725 -2.1 -6.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS05930 -2.1 -2.7 3-isopropylmalate dehydratase large subunit compare
MMP_RS05070 -2.1 -7.8 4Fe-4S dicluster domain-containing protein compare
MMP_RS05085 -2.1 -9.9 AAA family ATPase compare
MMP_RS02885 -2.1 -13.7 molybdopterin biosynthesis protein compare
MMP_RS01225 -2.1 -5.2 DUF5379 domain-containing protein compare
MMP_RS05765 -2.1 -5.8 M42 family metallopeptidase compare
MMP_RS00895 -2.0 -4.3 hypothetical protein compare
MMP_RS05080 -2.0 -12.0 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS01545 -2.0 -1.4 CBS domain-containing protein compare
MMP_RS01195 -2.0 -1.6 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS05540 -2.0 -2.7 hypothetical protein compare
MMP_RS07955 -2.0 -7.7 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS02190 -2.0 -2.6 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS00695 -2.0 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05055 -2.0 -11.7 DUF166 domain-containing protein compare
MMP_RS02240 -2.0 -4.0 methanogenesis marker 7 protein compare
MMP_RS06885 -2.0 -2.6 50S ribosome-binding GTPase compare
MMP_RS01380 -2.0 -5.2 PHP domain-containing protein compare
MMP_RS03025 -2.0 -5.2 molybdenum cofactor guanylyltransferase compare
MMP_RS07575 -2.0 -4.6 RNA ligase partner protein compare
MMP_RS02345 -2.0 -4.3 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS03580 -2.0 -3.4 signal recognition particle-docking protein FtsY compare
MMP_RS05430 -1.9 -7.0 TIGR00288 family NYN domain-containing protein compare
MMP_RS07685 -1.9 -5.4 TIGR01212 family radical SAM protein compare
MMP_RS08645 -1.9 -7.0 UPF0179 family protein compare
MMP_RS00555 -1.9 -5.7 MFS transporter compare
MMP_RS05090 -1.9 -8.1 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05285 -1.9 -6.5 MMPL family transporter compare
MMP_RS05850 -1.9 -5.0 Ldh family oxidoreductase compare
MMP_RS03145 -1.9 -6.9 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS01440 -1.8 -4.7 NAAT family transporter compare
MMP_RS08240 -1.8 -6.7 methanogenesis marker 16 metalloprotein compare
MMP_RS08435 -1.8 -2.4 Era-like GTP-binding protein compare
MMP_RS05505 -1.8 -9.5 class IV adenylate cyclase compare
MMP_RS01800 -1.8 -3.9 TIGR00303 family protein compare
MMP_RS06625 -1.8 -1.9 DNA primase compare
MMP_RS00050 -1.8 -7.2 AarF/UbiB family protein compare
MMP_RS00620 -1.8 -7.7 4Fe-4S binding protein compare
MMP_RS05280 -1.8 -7.6 COG1361 S-layer family protein compare
MMP_RS03095 -1.7 -4.5 diphthine synthase compare
MMP_RS02170 -1.7 -5.3 CBS domain-containing protein compare
MMP_RS06475 -1.7 -4.7 FAD-dependent oxidoreductase compare
MMP_RS07960 -1.7 -6.3 sugar phosphate isomerase/epimerase compare
MMP_RS08840 -1.6 -9.1 class I SAM-dependent methyltransferase compare
MMP_RS07645 -1.6 -4.9 aldehyde dehydrogenase family protein compare
MMP_RS03140 -1.6 -9.1 hypothetical protein compare
MMP_RS04500 -1.6 -10.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS02900 -1.6 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01325 -1.6 -2.5 dihydroneopterin aldolase family protein compare
MMP_RS00985 -1.5 -4.3 CDC48 family AAA ATPase compare
MMP_RS08210 -1.5 -2.1 phosphatidylglycerophosphatase A compare
MMP_RS01445 -1.5 -5.3 hypothetical protein compare
MMP_RS07600 -1.5 -1.9 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS05245 -1.5 -6.9 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS08690 -1.5 -5.5 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare
MMP_RS01795 -1.5 -1.7 methanogenesis marker 6 protein compare
MMP_RS06215 -1.4 -2.7 30S ribosomal protein S6e compare
MMP_RS07720 -1.4 -7.8 4Fe-4S binding protein compare
MMP_RS02875 -1.4 -7.2 chorismate pyruvate-lyase family protein compare
MMP_RS04775 -1.4 -3.0 adenosylhomocysteinase compare
MMP_RS05065 -1.4 -4.3 CooT family nickel-binding protein compare
MMP_RS03205 -1.4 -1.4 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS06130 -1.4 -3.6 peptidylprolyl isomerase compare
MMP_RS03485 -1.4 -3.6 TIGR00267 family protein compare
MMP_RS08635 -1.4 -1.6 UbiA family prenyltransferase compare
MMP_RS01365 -1.4 -3.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS01085 -1.4 -1.8 hypothetical protein compare
MMP_RS05545 -1.4 -4.8 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06315 -1.4 -0.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS03250 -1.4 -2.1 MJ1244 family protein compare
MMP_RS01700 -1.3 -0.8 dihydroxy-acid dehydratase compare
MMP_RS01250 -1.3 -3.7 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS02165 -1.3 -5.4 tRNA-dihydrouridine synthase compare
MMP_RS00515 -1.3 -0.9 DUF655 domain-containing protein compare
MMP_RS08590 -1.3 -5.1 flagellin compare
MMP_RS05345 -1.3 -5.2 hypothetical protein compare
MMP_RS06230 -1.3 -2.1 helix-turn-helix domain-containing protein compare
MMP_RS07535 -1.3 -5.9 4Fe-4S binding protein compare
MMP_RS09055 -1.3 -1.0 CAP domain-containing protein compare
MMP_RS00810 -1.3 -5.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS08940 -1.3 -1.0 MetS family NSS transporter small subunit compare
MMP_RS04785 -1.3 -6.8 hypothetical protein compare
MMP_RS06370 -1.3 -3.5 biotin synthase BioB compare
MMP_RS06710 -1.3 -3.8 selenium-binding protein compare
MMP_RS05800 -1.3 -5.7 B12-binding domain-containing radical SAM protein compare
MMP_RS08100 -1.2 -3.8 8-amino-7-oxononanoate synthase compare
MMP_RS03400 -1.2 -1.8 archease compare
MMP_RS08105 -1.2 -5.1 6-carboxyhexanoate--CoA ligase compare
MMP_RS08605 -1.2 -4.5 flagellar protein E compare
MMP_RS06340 -1.2 -5.9 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07710 -1.2 -3.8 cell division protein FtsZ compare
MMP_RS07750 -1.2 -3.1 DUF357 domain-containing protein compare
MMP_RS01720 -1.2 -1.5 replication factor C large subunit compare
MMP_RS02805 -1.2 -1.3 HEPN domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 L-Methionine across organisms