Experiment set8IT020 for Klebsiella michiganensis M5al

Compare to:

LB with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS09645 -6.7 -3.1 thioredoxin-disulfide reductase compare
BWI76_RS13920 -6.1 -9.3 magnesium-translocating P-type ATPase compare
BWI76_RS01210 -4.7 -3.8 tyrosine recombinase XerC compare
BWI76_RS00180 -4.5 -2.9 F0F1 ATP synthase subunit epsilon compare
BWI76_RS23240 -4.2 -2.9 exonuclease V subunit gamma compare
BWI76_RS15115 -4.1 -4.9 MFS transporter compare
BWI76_RS04510 -4.0 -2.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS23230 -3.1 -3.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS15225 -3.0 -2.2 DeoR family transcriptional regulator compare
BWI76_RS05450 -2.9 -3.2 ribonuclease HI compare
BWI76_RS15110 -2.6 -12.1 putative excinuclease ABC subunit A compare
BWI76_RS09660 -2.5 -2.4 DNA translocase FtsK compare
BWI76_RS26570 -2.0 -3.8 anion permease compare
BWI76_RS25425 -2.0 -3.1 arginine repressor compare
BWI76_RS05235 -1.8 -2.1 hypothetical protein compare
BWI76_RS06525 -1.7 -7.2 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS20650 -1.7 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS05200 -1.6 -2.6 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS17720 -1.6 -1.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS27430 -1.6 -1.6 (p)ppGpp synthetase compare
BWI76_RS02530 -1.5 -1.9 tRNA dimethylallyltransferase compare
BWI76_RS15845 -1.5 -1.5 hypothetical protein compare
BWI76_RS05120 -1.5 -8.4 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS02580 -1.5 -2.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS21450 -1.5 -2.8 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS24885 -1.4 -1.8 PTS galactitol transporter subunit IIB compare
BWI76_RS13915 -1.4 -3.2 magnesium transport protein MgtC compare
BWI76_RS00865 -1.4 -5.3 DNA-binding transcriptional regulator OxyR compare
BWI76_RS17975 -1.4 -2.6 tail-specific protease compare
BWI76_RS09190 -1.3 -2.7 hypothetical protein compare
BWI76_RS13595 -1.3 -3.3 transcriptional regulator compare
BWI76_RS07725 -1.3 -1.6 iron-enterobactin transporter permease compare
BWI76_RS21370 -1.3 -3.0 ATP-dependent RNA helicase SrmB compare
BWI76_RS03595 -1.3 -2.1 ethanolamine utilization protein EutM compare
BWI76_RS01200 -1.2 -2.4 diaminopimelate epimerase compare
BWI76_RS00345 -1.2 -3.2 protein disulfide oxidoreductase DsbA compare
BWI76_RS15840 -1.2 -1.9 prophage protein compare
BWI76_RS23265 -1.1 -3.9 hypothetical protein compare
BWI76_RS11700 -1.1 -1.6 hypothetical protein compare
BWI76_RS10990 -1.1 -1.7 dihydroorotase compare
BWI76_RS20895 -1.1 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00355 -1.1 -2.1 DNA polymerase I compare
BWI76_RS27390 -1.1 -3.6 ribonuclease PH compare
BWI76_RS16500 -1.1 -2.5 superoxide dismutase [Fe] compare
BWI76_RS15830 -1.1 -1.9 hypothetical protein compare
BWI76_RS04530 -1.0 -2.0 peptidylprolyl isomerase SurA compare
BWI76_RS16485 -1.0 -1.9 ribonuclease T compare
BWI76_RS09640 -1.0 -3.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS08260 -1.0 -2.8 LysR family transcriptional regulator compare
BWI76_RS14300 -1.0 -1.6 hypothetical protein compare
BWI76_RS11965 -1.0 -3.9 orotidine-5'-phosphate decarboxylase compare
BWI76_RS04715 -0.9 -0.8 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS14770 -0.9 -1.4 PTS IIA 2 domain protein compare
BWI76_RS13250 -0.9 -1.2 cytochrome b561 compare
BWI76_RS09615 -0.9 -1.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS20380 -0.9 -1.2 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS06530 -0.9 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS11440 -0.9 -1.2 hypothetical protein compare
BWI76_RS08120 -0.9 -3.4 cobalt transporter compare
BWI76_RS13820 -0.9 -1.5 hypothetical protein compare
BWI76_RS01800 -0.9 -2.6 glucose-6-phosphate isomerase compare
BWI76_RS01775 -0.9 -1.2 hypothetical protein compare
BWI76_RS04705 -0.9 -3.0 DNA-binding transcriptional regulator FruR compare
BWI76_RS13265 -0.9 -2.6 hypothetical protein compare
BWI76_RS05260 -0.9 -1.5 chaperone compare
BWI76_RS27165 -0.9 -1.9 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS16965 -0.9 -1.7 murein lipoprotein compare
BWI76_RS12420 -0.9 -1.1 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS14075 -0.8 -1.5 TetR family transcriptional regulator compare
BWI76_RS27385 -0.8 -3.3 orotate phosphoribosyltransferase compare
BWI76_RS17190 -0.8 -1.5 TonB system transport protein TonB compare
BWI76_RS12090 -0.8 -1.1 HNH endonuclease compare
BWI76_RS11235 -0.8 -1.2 hypothetical protein compare
BWI76_RS04525 -0.8 -1.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS05005 -0.8 -2.3 polynucleotide adenylyltransferase compare
BWI76_RS24315 -0.8 -3.5 cell division protein FtsP compare
BWI76_RS24900 -0.8 -1.4 DeoR family transcriptional regulator compare
BWI76_RS26245 -0.8 -2.6 transcriptional regulator compare
BWI76_RS13435 -0.8 -1.3 hypothetical protein compare
BWI76_RS18815 -0.8 -2.1 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS07760 -0.8 -2.4 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS14775 -0.7 -1.8 creatinine amidohydrolase compare
BWI76_RS16075 -0.7 -1.1 oxidoreductase compare
BWI76_RS15835 -0.7 -0.7 hypothetical protein compare
BWI76_RS13975 -0.7 -1.5 urea carboxylase compare
BWI76_RS04100 -0.7 -2.9 peptide chain release factor 3 compare
BWI76_RS15215 -0.7 -1.0 N-acetyltransferase compare
BWI76_RS16025 -0.7 -2.3 triphosphoribosyl-dephospho-CoA synthase compare
BWI76_RS18755 -0.7 -1.0 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS25070 -0.7 -1.4 hypothetical protein compare
BWI76_RS09910 -0.7 -5.3 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS12855 -0.7 -1.5 enamine deaminase RidA compare
BWI76_RS19845 -0.7 -2.3 phosphatase compare
BWI76_RS23185 -0.7 -1.9 propanediol utilization: polyhedral bodies pduT compare
BWI76_RS09670 -0.7 -2.2 recombination factor protein RarA compare
BWI76_RS25065 -0.7 -2.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS00710 -0.7 -1.9 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS11155 -0.7 -1.5 penicillin-binding protein activator LpoB compare
BWI76_RS12185 -0.7 -1.2 hypothetical protein compare
BWI76_RS21285 -0.7 -1.4 HAD family hydrolase compare
BWI76_RS23480 -0.7 -4.5 EAL domain-containing protein compare
BWI76_RS11435 -0.7 -1.2 hypothetical protein compare
BWI76_RS09135 -0.7 -2.0 oxidoreductase compare
BWI76_RS25060 -0.7 -1.9 lipoprotein NlpI compare
BWI76_RS00875 -0.7 -2.4 DNA-binding transcriptional regulator FabR compare
BWI76_RS24635 -0.7 -2.9 autoinducer-2 (AI-2) modifying protein LsrG compare
BWI76_RS26075 -0.7 -1.5 DNA adenine methylase compare
BWI76_RS07070 -0.7 -3.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS21410 -0.7 -1.3 lipoprotein compare
BWI76_RS04470 -0.7 -4.0 carbamoyl phosphate synthase large subunit compare
BWI76_RS09610 -0.7 -2.0 ATP-dependent Clp protease adaptor ClpS compare
BWI76_RS14755 -0.7 -1.9 SIS domain-containing protein compare
BWI76_RS02410 -0.7 -1.3 EF-P beta-lysylation protein EpmB compare
BWI76_RS12390 -0.7 -1.8 antibiotic biosynthesis monooxygenase compare
BWI76_RS14155 -0.6 -1.2 transketolase compare
BWI76_RS15850 -0.6 -0.4 DUF1317 domain-containing protein compare
BWI76_RS18165 -0.6 -1.2 NUDIX pyrophosphatase compare
BWI76_RS01220 -0.6 -3.0 DNA-dependent helicase II compare
BWI76_RS09195 -0.6 -1.0 N-acetyltransferase compare
BWI76_RS16445 -0.6 -2.5 auxiliary transporter membrane fusion protein compare
BWI76_RS19935 -0.6 -1.3 hypothetical protein compare
BWI76_RS04465 -0.6 -2.0 carbamoyl-phosphate synthase small subunit compare
BWI76_RS01890 -0.6 -2.7 transcriptional regulator Zur compare
BWI76_RS08525 -0.6 -0.8 colicin transporter compare
BWI76_RS17565 -0.6 -0.9 hypothetical protein compare
BWI76_RS10035 -0.6 -1.2 hypothetical protein compare
BWI76_RS20965 -0.6 -2.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS26200 -0.6 -2.6 starch synthase compare
BWI76_RS23970 -0.6 -1.1 mechanosensitive ion channel protein MscS compare
BWI76_RS04570 -0.6 -3.9 RNA polymerase-associated protein RapA compare
BWI76_RS11370 -0.6 -1.8 iron-dicitrate transporter subunit FecD compare
BWI76_RS18065 -0.6 -1.3 DNA polymerase III subunit theta compare
BWI76_RS22630 -0.6 -2.0 LysR family transcriptional regulator compare
BWI76_RS24850 -0.6 -3.5 DeoR family transcriptional regulator compare
BWI76_RS24920 -0.6 -1.5 YraN family protein compare
BWI76_RS17955 -0.6 -2.0 hypothetical protein compare
BWI76_RS09530 -0.6 -0.9 hypothetical protein compare
BWI76_RS13560 -0.6 -0.7 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS09395 -0.6 -2.4 late control gene D protein compare
BWI76_RS06295 -0.6 -2.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS14835 -0.6 -1.0 hypothetical protein compare
BWI76_RS01205 -0.6 -1.6 DUF484 family protein compare
BWI76_RS10700 -0.6 -1.8 XRE family transcriptional regulator compare
BWI76_RS26775 -0.6 -2.2 endo-1,4-D-glucanase compare
BWI76_RS20350 -0.6 -3.2 amidophosphoribosyltransferase compare
BWI76_RS13645 -0.6 -1.5 N-hydroxyarylamine O-acetyltransferase compare
BWI76_RS06865 -0.6 -1.9 bifunctional UDP-sugar hydrolase/5'-nucleotidase compare
BWI76_RS01615 -0.6 -2.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS25285 -0.6 -0.9 HPr family phosphocarrier protein compare
BWI76_RS13870 -0.6 -2.6 hypothetical protein compare
BWI76_RS17980 -0.6 -1.1 RNA chaperone ProQ compare
BWI76_RS21265 -0.6 -4.1 phosphoribosylformylglycinamidine synthase compare
BWI76_RS12735 -0.6 -2.2 phage repressor protein compare
BWI76_RS01565 -0.6 -1.3 NADH pyrophosphatase compare
BWI76_RS08210 -0.5 -1.6 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS19145 -0.5 -1.4 formate dehydrogenase cytochrome b556 subunit compare
BWI76_RS17775 -0.5 -1.6 hypothetical protein compare
BWI76_RS13575 -0.5 -1.5 sugar binding transcriptional regulator, LacI family protein compare
BWI76_RS25945 -0.5 -3.0 ABC transporter ATP-binding protein compare
BWI76_RS05835 -0.5 -1.6 gamma-glutamyl-phosphate reductase compare
BWI76_RS06075 -0.5 -2.2 taurine transporter subunit compare
BWI76_RS21580 -0.5 -0.9 SsrA-binding protein compare
BWI76_RS23820 -0.5 -1.6 flavodoxin FldB compare
BWI76_RS24025 -0.5 -2.6 agmatinase compare
BWI76_RS16120 -0.5 -1.2 4-carboxymuconolactone decarboxylase compare
BWI76_RS13445 -0.5 -0.7 alpha/beta hydrolase compare
BWI76_RS09315 -0.5 -1.4 hypothetical protein compare
BWI76_RS20360 -0.5 -0.8 cell division protein DedD compare
BWI76_RS09895 -0.5 -1.7 aliphatic sulfonates ABC transporter ATP-binding protein compare
BWI76_RS05525 -0.5 -1.6 glycerophosphodiester phosphodiesterase compare
BWI76_RS18130 -0.5 -1.2 zinc ABC transporter substrate-binding protein compare
BWI76_RS08645 -0.5 -1.8 molybdate ABC transporter substrate-binding protein compare
BWI76_RS21350 -0.5 -2.2 anti-RNA polymerase sigma factor SigE compare
BWI76_RS09520 -0.5 -0.7 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS27225 -0.5 -1.5 rhodanese-like domain-containing protein compare
BWI76_RS23885 -0.5 -1.0 2-octaprenylphenol hydroxylase compare
BWI76_RS11250 -0.5 -1.3 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS21445 -0.5 -1.5 hypothetical protein compare
BWI76_RS14675 -0.5 -1.6 fimbrial chaperone YfcS compare
BWI76_RS06375 -0.5 -1.3 oxidoreductase compare
BWI76_RS15760 -0.5 -0.9 hypothetical protein compare
BWI76_RS15720 -0.5 -2.0 prophage protein NinE compare
BWI76_RS12815 -0.5 -1.8 transcriptional regulator FeaR compare
BWI76_RS15345 -0.5 -2.2 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS26685 -0.5 -2.0 glutathione-disulfide reductase compare
BWI76_RS01135 -0.5 -2.4 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS04305 -0.5 -0.7 molecular chaperone DnaJ compare
BWI76_RS00640 -0.5 -1.7 L-rhamnose mutarotase compare
BWI76_RS10635 -0.5 -2.4 GGDEF domain-containing protein compare
BWI76_RS23915 -0.5 -1.4 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS20940 -0.5 -0.9 uracil/xanthine transporter compare
BWI76_RS21140 -0.5 -1.5 molecular chaperone HscA compare
BWI76_RS20355 -0.5 -1.6 colicin V production protein compare
BWI76_RS20930 -0.5 -1.2 arsenate reductase (glutaredoxin) compare
BWI76_RS13925 -0.5 -2.6 catalase/peroxidase HPI compare
BWI76_RS19210 -0.5 -2.4 LuxR family transcriptional regulator compare
BWI76_RS09500 -0.5 -1.0 arginine ABC transporter substrate-binding protein compare
BWI76_RS05555 -0.5 -1.6 Crl family RNA polymerase assembly factor compare
BWI76_RS06485 -0.5 -0.7 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS23135 -0.5 -1.3 propanediol dehydratase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms