Experiment set8IT019 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

200 most important genes:

  gene name fitness t score description  
Xcc-8004.4620.1 -4.0 -12.0 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4481.1 -3.9 -8.7 hypothetical protein compare
Xcc-8004.2086.1 -3.5 -3.1 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.4510.1 -2.9 -2.8 ATP binding component of ABC-transporter compare
Xcc-8004.3536.1 -2.9 -6.9 FIG01210913: hypothetical protein compare
Xcc-8004.659.1 -2.8 -4.6 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.3324.1 -2.8 -4.9 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.1727.1 -2.7 -4.7 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.130.1 -2.6 -9.1 hypothetical protein compare
Xcc-8004.2012.1 -2.6 -8.2 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.1511.1 -2.5 -4.0 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.3346.1 -2.4 -4.0 hypothetical protein compare
Xcc-8004.451.1 -2.4 -5.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.1676.1 -2.4 -9.4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.957.1 -2.4 -7.2 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.3049.1 -2.3 -9.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.601.1 -2.3 -6.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4398.1 -2.3 -7.2 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.3855.1 -2.2 -7.9 FIG01209965: hypothetical protein compare
Xcc-8004.2011.1 -2.2 -3.3 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.3395.1 -2.2 -3.8 Transcriptional regulator, GntR family compare
Xcc-8004.1967.1 -2.2 -9.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.4503.1 -2.2 -6.5 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.3281.1 -2.1 -5.3 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.4439.1 -2.1 -10.8 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.622.1 -2.1 -5.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.2322.1 -2.1 -5.0 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.4112.1 -2.1 -4.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2387.1 -2.1 -3.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.271.1 -2.0 -4.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.3321.1 -2.0 -2.6 FIG01209847: hypothetical protein compare
Xcc-8004.1437.1 -2.0 -6.1 Kup system potassium uptake protein compare
Xcc-8004.5020.1 -1.9 -4.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.4596.1 -1.9 -8.2 hypothetical protein compare
Xcc-8004.1964.1 -1.9 -10.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.689.1 -1.9 -1.9 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.2266.1 -1.9 -3.3 FIG01211351: hypothetical protein compare
Xcc-8004.4026.1 -1.9 -6.8 FIG01209666: hypothetical protein compare
Xcc-8004.4170.1 -1.9 -3.0 LSU ribosomal protein L25p compare
Xcc-8004.2320.1 -1.8 -5.7 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.4824.1 -1.8 -9.7 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.4073.1 -1.8 -8.3 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.645.1 -1.8 -2.2 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.621.1 -1.8 -5.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.1414.1 -1.8 -1.6 Lactoylglutathione lyase and related lyases compare
Xcc-8004.657.1 -1.7 -5.2 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.2316.1 -1.7 -8.3 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.1058.1 -1.7 -3.7 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.2319.1 -1.7 -5.4 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.3282.1 -1.7 -7.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.1955.1 -1.7 -7.0 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.2079.1 -1.7 -3.3 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.4737.1 -1.7 -5.5 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.4514.1 -1.7 -9.8 Glycosyltransferase compare
Xcc-8004.3361.1 -1.6 -4.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Xcc-8004.1053.1 -1.6 -6.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.1049.1 -1.6 -7.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.649.1 -1.6 -2.7 hypothetical protein compare
Xcc-8004.4025.1 -1.6 -9.0 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.1962.1 -1.6 -3.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.608.1 -1.6 -7.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.1060.1 -1.6 -7.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.4738.1 -1.6 -8.0 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.2318.1 -1.6 -4.2 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.2323.1 -1.5 -5.4 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.2931.1 -1.5 -4.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.2412.1 -1.5 -8.8 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.1205.1 -1.5 -2.3 hypothetical protein compare
Xcc-8004.43.1 -1.5 -6.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.3283.1 -1.5 -6.5 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.1616.1 -1.5 -2.3 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.4739.1 -1.4 -4.7 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.4024.1 -1.4 -5.1 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.3322.1 -1.4 -1.7 FIG01211446: hypothetical protein compare
Xcc-8004.2944.1 -1.4 -6.0 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.3792.1 -1.4 -1.9 Mobile element protein compare
Xcc-8004.703.1 -1.3 -1.6 hypothetical protein compare
Xcc-8004.1010.1 -1.3 -5.0 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.5368.1 -1.3 -2.8 FIG01210868: hypothetical protein compare
Xcc-8004.4752.1 -1.3 -2.5 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.2943.1 -1.3 -3.4 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.3362.1 -1.3 -4.0 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Xcc-8004.4486.1 -1.3 -8.8 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.3156.1 -1.3 -4.6 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.4480.1 -1.3 -7.4 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.44.1 -1.2 -10.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.2385.1 -1.2 -6.5 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.4313.1 -1.2 -2.6 hypothetical protein compare
Xcc-8004.4485.1 -1.2 -5.9 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.270.1 -1.2 -4.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3054.1 -1.2 -1.3 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3402.1 -1.2 -3.3 FIG01210246: hypothetical protein compare
Xcc-8004.1059.1 -1.2 -5.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.1615.1 -1.2 -1.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1050.1 -1.1 -2.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.2977.1 -1.1 -8.9 hypothetical protein compare
Xcc-8004.4062.1 -1.1 -6.4 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Xcc-8004.4251.1 -1.1 -2.6 hypothetical protein compare
Xcc-8004.826.1 -1.1 -7.4 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Xcc-8004.1871.1 -1.1 -3.6 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.1372.1 -1.1 -2.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1873.1 -1.1 -2.6 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.1705.1 -1.1 -1.1 FIG01209877: hypothetical protein compare
Xcc-8004.3859.1 -1.1 -1.8 Two-component system regulatory protein compare
Xcc-8004.4477.1 -1.1 -1.4 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.178.1 -1.1 -1.5 hypothetical protein compare
Xcc-8004.2420.1 -1.1 -4.1 PHA synthase subunit compare
Xcc-8004.5203.1 -1.0 -1.4 Twin-arginine translocation protein TatB compare
Xcc-8004.1491.1 -1.0 -7.5 Glycosyltransferase compare
Xcc-8004.3881.1 -1.0 -2.6 hypothetical protein compare
Xcc-8004.3433.1 -1.0 -4.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.1316.1 -1.0 -1.8 hypothetical protein compare
Xcc-8004.1336.1 -1.0 -4.8 two-component system sensor protein compare
Xcc-8004.3980.1 -1.0 -4.3 2-methylcitrate synthase (EC 2.3.3.5) compare
Xcc-8004.3537.1 -1.0 -4.2 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.1359.1 -1.0 -3.6 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4403.1 -1.0 -1.9 Arsenate reductase (EC 1.20.4.1) compare
Xcc-8004.395.1 -1.0 -2.9 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Xcc-8004.577.1 -1.0 -3.4 Transcriptional regulator, MarR family compare
Xcc-8004.1236.1 -1.0 -4.0 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.2561.1 -1.0 -4.3 FIG01213638: hypothetical protein compare
Xcc-8004.2346.1 -1.0 -1.0 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.2259.1 -1.0 -3.6 PhbF compare
Xcc-8004.2421.1 -1.0 -7.1 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.618.1 -1.0 -2.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.3479.1 -1.0 -1.8 aklaviketone reductase compare
Xcc-8004.1568.1 -1.0 -1.4 Glycine cleavage system H protein compare
Xcc-8004.5407.1 -1.0 -2.2 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.93.1 -1.0 -2.0 FIG01211857: hypothetical protein compare
Xcc-8004.629.1 -1.0 -1.7 hypothetical protein compare
Xcc-8004.2384.1 -1.0 -6.3 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.4507.1 -1.0 -3.2 Glycosyltransferase compare
Xcc-8004.4327.1 -1.0 -1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3360.1 -0.9 -3.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Xcc-8004.429.1 -0.9 -1.0 hypothetical protein compare
Xcc-8004.2386.1 -0.9 -6.5 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.1057.1 -0.9 -5.2 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.3041.1 -0.9 -2.3 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.2957.1 -0.9 -5.1 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.2954.1 -0.9 -6.4 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.2505.1 -0.9 -6.4 FIG01212099: hypothetical protein compare
Xcc-8004.287.1 -0.9 -3.4 Haloalkane dehalogenase-like protein compare
Xcc-8004.574.1 -0.9 -4.4 Di-/tripeptide transporter compare
Xcc-8004.252.1 -0.9 -3.6 Nitrogen regulation protein NtrC compare
Xcc-8004.1014.1 -0.9 -3.2 FIG01210031: hypothetical protein compare
Xcc-8004.665.1 -0.9 -2.9 FIG01211711: hypothetical protein compare
Xcc-8004.1241.1 -0.9 -2.9 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3653.1 -0.9 -1.3 FIG01212122: hypothetical protein compare
Xcc-8004.4501.1 -0.8 -3.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.1436.1 -0.8 -1.2 Holliday junction DNA helicase RuvA compare
Xcc-8004.4923.1 -0.8 -1.7 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Xcc-8004.4376.1 -0.8 -3.2 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.2081.1 -0.8 -2.4 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.1959.1 -0.8 -1.5 hypothetical protein compare
Xcc-8004.2947.1 -0.8 -4.1 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.4200.1 -0.8 -1.0 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.4506.1 -0.8 -4.2 membrane protein WxcD compare
Xcc-8004.4473.1 -0.8 -6.2 FIG01212400: hypothetical protein compare
Xcc-8004.3661.1 -0.8 -2.7 5'-methylthioadenosine phosphorylase (EC 2.4.2.28) compare
Xcc-8004.722.1 -0.8 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2219.1 -0.8 -3.1 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.4105.1 -0.8 -2.4 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.968.1 -0.8 -4.1 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.2754.1 -0.8 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.315.1 -0.8 -0.9 FIG01211941: hypothetical protein compare
Xcc-8004.2358.1 -0.8 -3.8 Segregation and condensation protein A compare
Xcc-8004.3815.1 -0.8 -2.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.2326.1 -0.8 -2.4 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Xcc-8004.4976.1 -0.8 -5.2 hypothetical protein compare
Xcc-8004.323.1 -0.8 -1.3 FIG01210738: hypothetical protein compare
Xcc-8004.1023.1 -0.8 -3.2 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.1651.1 -0.8 -3.7 putative Cytochrome bd2, subunit I compare
Xcc-8004.3363.1 -0.8 -2.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Xcc-8004.4013.1 -0.8 -1.9 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.4499.1 -0.8 -1.0 Mobile element protein compare
Xcc-8004.432.1 -0.8 -1.4 hypothetical protein compare
Xcc-8004.3130.1 -0.8 -3.2 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.3582.1 -0.8 -1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4288.1 -0.8 -2.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.2343.1 -0.8 -1.3 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.2948.1 -0.7 -3.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.653.1 -0.7 -2.4 Transcriptional regulator, LysR family compare
Xcc-8004.3131.1 -0.7 -3.3 hypothetical protein compare
Xcc-8004.742.1 -0.7 -2.5 Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) compare
Xcc-8004.4199.1 -0.7 -4.2 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Xcc-8004.3676.1 -0.7 -1.9 Translation elongation factor LepA compare
Xcc-8004.1858.1 -0.7 -1.0 FIG01211170: hypothetical protein compare
Xcc-8004.2059.1 -0.7 -1.0 hypothetical protein compare
Xcc-8004.3072.1 -0.7 -1.8 hypothetical protein compare
Xcc-8004.1357.1 -0.7 -2.4 FIG01209939: hypothetical protein compare
Xcc-8004.1797.1 -0.7 -2.7 Aldo-keto reductase compare
Xcc-8004.3385.1 -0.7 -1.6 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) compare
Xcc-8004.3310.1 -0.7 -2.7 Chromosome partition protein smc compare
Xcc-8004.1028.1 -0.7 -2.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.1266.1 -0.7 -1.9 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.2946.1 -0.7 -2.1 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.1244.1 -0.7 -4.0 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.2730.1 -0.7 -2.6 Molybdopterin biosynthesis protein MoeB compare
Xcc-8004.2930.1 -0.7 -1.1 hypothetical protein compare
Xcc-8004.1361.1 -0.7 -1.5 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in in planta mesophyll experiments

For in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days across organisms