Experiment set8IT018 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Citrulline nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4597 -6.5 -4.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3842 -6.2 -4.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_64 -6.1 -4.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4826 -6.1 -7.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4825 -5.8 -6.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3248 -5.7 -6.4 Probable transmembrane protein compare
Pf6N2E2_71 -5.6 -6.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3630 -5.6 -6.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_77 -5.5 -7.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3751 -5.5 -12.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4596 -5.5 -9.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4047 -5.4 -3.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5175 -5.4 -13.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3783 -5.1 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2588 -5.1 -4.9 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_5176 -5.1 -9.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3253 -5.0 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3752 -4.9 -21.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3839 -4.8 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4048 -4.8 -9.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3841 -4.7 -4.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_66 -4.7 -11.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5177 -4.7 -10.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5014 -4.7 -2.1 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3252 -4.6 -10.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5006 -4.6 -9.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3782 -4.5 -5.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_50 -4.4 -8.7 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3940 -4.2 -13.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4564 -4.2 -9.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3610 -4.2 -5.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2574 -4.1 -2.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_658 -4.1 -13.2 sensor histidine kinase compare
Pf6N2E2_2073 -4.0 -8.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3060 -3.9 -4.5 Outer membrane protein H precursor compare
Pf6N2E2_5527 -3.9 -2.7 Cold shock protein CspC compare
Pf6N2E2_5156 -3.8 -2.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5150 -3.8 -8.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4279 -3.8 -15.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4187 -3.8 -4.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3251 -3.7 -12.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4278 -3.6 -10.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3932 -3.5 -4.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4759 -3.4 -16.5 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_2885 -3.4 -8.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5160 -3.4 -3.0 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2258 -3.3 -13.3 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2074 -3.3 -2.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4638 -3.1 -3.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4611 -3.1 -5.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3264 -3.0 -4.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4277 -3.0 -10.1 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3826 -3.0 -6.8 Nitrogen regulation protein NR(I) compare
Pf6N2E2_302 -2.9 -7.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4372 -2.9 -6.9 FIG00460773: hypothetical protein compare
Pf6N2E2_3170 -2.7 -7.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2897 -2.7 -11.0 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_4764 -2.6 -5.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_5666 -2.6 -11.7 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2010 -2.6 -2.9 hypothetical protein compare
Pf6N2E2_4762 -2.5 -3.7 Biotin synthesis protein BioH compare
Pf6N2E2_63 -2.5 -3.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2465 -2.5 -8.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3198 -2.5 -2.6 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3984 -2.4 -13.2 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_1056 -2.4 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2218 -2.4 -5.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3349 -2.4 -3.4 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5676 -2.3 -4.1 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_2892 -2.3 -11.0 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_2753 -2.3 -3.6 HtrA protease/chaperone protein compare
Pf6N2E2_1672 -2.3 -9.8 hypothetical protein compare
Pf6N2E2_4987 -2.2 -2.0 MaoC-like domain protein compare
Pf6N2E2_2895 -2.2 -9.5 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_1186 -2.2 -6.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5258 -2.2 -8.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_4631 -2.1 -10.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_4206 -2.1 -2.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2896 -2.1 -5.0 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_2340 -2.1 -5.7 Transcriptional regulator, GntR family compare
Pf6N2E2_4763 -2.1 -9.0 Biotin synthesis protein BioC compare
Pf6N2E2_2891 -2.1 -10.7 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_3938 -2.0 -12.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_4761 -2.0 -9.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2889 -2.0 -8.8 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_2022 -2.0 -8.3 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_2890 -2.0 -9.3 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_51 -2.0 -6.6 hypothetical protein compare
Pf6N2E2_5665 -2.0 -6.6 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_5669 -1.9 -6.6 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_5103 -1.8 -1.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_477 -1.8 -3.5 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_5720 -1.8 -11.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_3460 -1.8 -2.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4009 -1.8 -8.3 GGDEF domain protein compare
Pf6N2E2_4803 -1.8 -1.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2893 -1.7 -5.2 hypothetical protein compare
Pf6N2E2_5950 -1.7 -3.5 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4071 -1.7 -4.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1187 -1.7 -5.7 Probable nikkomycin biosynthesis protein, carboxylase compare
Pf6N2E2_2186 -1.6 -4.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_2124 -1.6 -2.7 Mg(2+) transport ATPase protein C compare
Pf6N2E2_5242 -1.6 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5494 -1.6 -4.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5668 -1.5 -5.0 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3206 -1.5 -1.6 hypothetical protein compare
Pf6N2E2_2473 -1.5 -1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_4678 -1.5 -1.1 hypothetical protein compare
Pf6N2E2_5728 -1.5 -2.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_70 -1.5 -3.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4276 -1.4 -4.9 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4159 -1.4 -2.7 Cytochrome c4 compare
Pf6N2E2_4052 -1.4 -1.8 FIG00955481: hypothetical protein compare
Pf6N2E2_2530 -1.4 -8.3 Sensory box/GGDEF family protein compare
Pf6N2E2_5337 -1.4 -4.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2899 -1.4 -4.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_5257 -1.4 -5.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3825 -1.4 -3.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_2863 -1.4 -5.8 Gluconate permease compare
Pf6N2E2_5667 -1.3 -6.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5316 -1.3 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2527 -1.3 -3.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4963 -1.3 -2.3 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_3885 -1.3 -3.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_3786 -1.3 -3.4 Twin-arginine translocation protein TatC compare
Pf6N2E2_4412 -1.3 -6.9 Ammonium transporter compare
Pf6N2E2_5190 -1.3 -6.6 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_5955 -1.3 -5.0 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_1113 -1.3 -2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_5705 -1.3 -1.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5338 -1.3 -5.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2217 -1.3 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5155 -1.3 -2.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5219 -1.3 -6.5 FIG140336: TPR domain protein compare
Pf6N2E2_4077 -1.2 -2.6 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4205 -1.2 -3.2 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1443 -1.2 -3.7 putative aldo/keto reductase compare
Pf6N2E2_2864 -1.2 -2.3 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_4773 -1.2 -1.3 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_2706 -1.2 -2.4 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_953 -1.2 -2.3 FIG00958851: hypothetical protein compare
Pf6N2E2_5339 -1.2 -5.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3072 -1.2 -6.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_4392 -1.2 -2.4 Translation initiation inhibitor compare
Pf6N2E2_2274 -1.1 -4.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2536 -1.1 -2.2 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_2513 -1.1 -3.7 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4162 -1.1 -2.7 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_178 -1.1 -1.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_1294 -1.1 -1.8 Carbon starvation protein A compare
Pf6N2E2_75 -1.1 -2.2 Colicin V production protein compare
Pf6N2E2_2518 -1.1 -2.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4454 -1.1 -3.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3941 -1.1 -2.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_1673 -1.1 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2311 -1.1 -5.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2181 -1.1 -1.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4153 -1.1 -1.2 Sensory box histidine kinase compare
Pf6N2E2_5524 -1.1 -6.4 Outer membrane porin, OprD family compare
Pf6N2E2_3480 -1.1 -1.8 Transcriptional regulator, ArsR family compare
Pf6N2E2_2310 -1.0 -6.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4417 -1.0 -3.9 Protein of unknown function DUF484 compare
Pf6N2E2_4353 -1.0 -3.3 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2117 -1.0 -6.9 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_1450 -1.0 -2.3 FIG00960438: hypothetical protein compare
Pf6N2E2_5520 -1.0 -4.4 Sensory box histidine kinase compare
Pf6N2E2_420 -1.0 -1.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5746 -1.0 -1.7 Cobalamin synthase compare
Pf6N2E2_613 -1.0 -1.4 lipoprotein, putative compare
Pf6N2E2_3340 -1.0 -6.7 Fructose repressor FruR, LacI family compare
Pf6N2E2_5679 -1.0 -3.9 hypothetical protein compare
Pf6N2E2_2852 -1.0 -5.5 GGDEF domain/EAL domain protein compare
Pf6N2E2_3933 -1.0 -4.8 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_3876 -1.0 -3.2 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_4928 -1.0 -1.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_2888 -1.0 -5.7 Glucose-selective porin OprB compare
Pf6N2E2_6090 -0.9 -2.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_3521 -0.9 -4.8 Sensor histidine kinase/response regulator compare
Pf6N2E2_2552 -0.9 -3.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_156 -0.9 -2.1 Carbon storage regulator compare
Pf6N2E2_3373 -0.9 -1.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_1606 -0.9 -4.1 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_4025 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_4612 -0.9 -3.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_1932 -0.9 -4.0 Transcriptional regulator, IclR family compare
Pf6N2E2_2390 -0.9 -3.0 FIG00959101: hypothetical protein compare
Pf6N2E2_3074 -0.9 -1.2 FIG00960973: hypothetical protein compare
Pf6N2E2_2286 -0.9 -2.1 FIG00953287: hypothetical protein compare
Pf6N2E2_623 -0.9 -1.4 FIG00954674: hypothetical protein compare
Pf6N2E2_3095 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_5487 -0.9 -3.3 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5300 -0.9 -6.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5671 -0.9 -2.5 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3607 -0.9 -4.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2313 -0.9 -2.7 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4453 -0.9 -7.0 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2267 -0.9 -2.2 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_5331 -0.9 -4.1 ATPase, AFG1 family compare
Pf6N2E2_1545 -0.9 -2.7 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_161 -0.9 -2.5 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Citrulline in Pseudomonas fluorescens FW300-N2E2

For nitrogen source L-Citrulline across organisms