Experiment set8IT017 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Gly-Glu nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3060 -5.3 -3.7 Outer membrane protein H precursor compare
Pf6N2E2_3842 -4.6 -3.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3825 -4.3 -3.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3253 -4.2 -2.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5175 -4.1 -6.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3826 -4.1 -2.8 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4596 -4.1 -5.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5177 -4.1 -7.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3610 -4.0 -4.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3313 -4.0 -3.9 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf6N2E2_5176 -4.0 -4.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3782 -4.0 -2.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5006 -3.9 -5.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4825 -3.8 -6.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3783 -3.8 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4597 -3.8 -7.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4987 -3.7 -1.8 MaoC-like domain protein compare
Pf6N2E2_4047 -3.7 -3.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4564 -3.6 -8.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_66 -3.6 -7.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_77 -3.6 -3.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3839 -3.5 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5679 -3.5 -4.8 hypothetical protein compare
Pf6N2E2_4048 -3.5 -5.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3752 -3.5 -14.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2258 -3.5 -7.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2897 -3.4 -7.6 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_3751 -3.4 -10.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_658 -3.3 -8.7 sensor histidine kinase compare
Pf6N2E2_760 -3.3 -9.1 Na+/H+ antiporter NhaB compare
Pf6N2E2_4826 -3.2 -6.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_5150 -3.2 -4.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_71 -3.2 -5.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3841 -3.1 -3.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3940 -3.0 -8.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3869 -3.0 -9.1 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_3248 -2.9 -4.4 Probable transmembrane protein compare
Pf6N2E2_3311 -2.9 -6.5 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) conserved
Pf6N2E2_63 -2.8 -5.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_1187 -2.8 -6.9 Probable nikkomycin biosynthesis protein, carboxylase compare
Pf6N2E2_64 -2.8 -3.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2274 -2.7 -4.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5558 -2.7 -8.9 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) conserved
Pf6N2E2_2885 -2.7 -3.7 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_2465 -2.7 -5.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4009 -2.7 -10.5 GGDEF domain protein compare
Pf6N2E2_2218 -2.7 -1.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3251 -2.6 -8.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4279 -2.6 -9.6 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3942 -2.6 -8.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_4278 -2.6 -9.4 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4372 -2.6 -3.5 FIG00460773: hypothetical protein compare
Pf6N2E2_5993 -2.6 -1.5 FIG00957412: hypothetical protein compare
Pf6N2E2_2073 -2.6 -4.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2152 -2.6 -2.4 hypothetical protein compare
Pf6N2E2_3611 -2.5 -1.7 HflC protein compare
Pf6N2E2_3072 -2.5 -8.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_2574 -2.4 -1.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_1186 -2.4 -4.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2117 -2.4 -10.5 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_3252 -2.4 -6.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3314 -2.3 -9.1 Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) conserved
Pf6N2E2_3307 -2.3 -8.8 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) conserved
Pf6N2E2_4071 -2.2 -3.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2074 -2.2 -1.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5841 -2.2 -1.5 GlcG protein compare
Pf6N2E2_3941 -2.2 -2.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2708 -2.2 -4.1 Lactam utilization protein LamB compare
Pf6N2E2_5156 -2.1 -1.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3480 -2.1 -2.1 Transcriptional regulator, ArsR family compare
Pf6N2E2_3984 -2.1 -8.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5160 -2.1 -1.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3312 -2.1 -4.4 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) conserved
Pf6N2E2_3170 -2.1 -6.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4418 -2.1 -1.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_84 -2.1 -1.3 hypothetical protein compare
Pf6N2E2_3521 -2.1 -8.1 Sensor histidine kinase/response regulator compare
Pf6N2E2_4187 -2.1 -2.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2217 -2.0 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3725 -2.0 -2.7 FIG085779: Lipoprotein compare
Pf6N2E2_5728 -2.0 -3.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_1147 -2.0 -2.6 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_4025 -2.0 -1.9 hypothetical protein compare
Pf6N2E2_5579 -2.0 -6.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2320 -2.0 -2.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3807 -1.9 -3.8 Histidine utilization repressor compare
Pf6N2E2_5664 -1.9 -4.5 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_3505 -1.9 -1.8 Translation initiation factor SUI1-related protein compare
Pf6N2E2_3835 -1.9 -3.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5816 -1.9 -1.7 Smr domain protein compare
Pf6N2E2_178 -1.9 -1.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2795 -1.9 -2.0 putative exported protein compare
Pf6N2E2_3271 -1.8 -1.7 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_6164 -1.8 -1.2 tRNA-Val-TAC compare
Pf6N2E2_3871 -1.8 -9.1 FIG00553872: hypothetical protein compare
Pf6N2E2_2503 -1.8 -1.9 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_4638 -1.7 -2.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1932 -1.7 -4.5 Transcriptional regulator, IclR family compare
Pf6N2E2_50 -1.7 -5.7 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4153 -1.7 -1.3 Sensory box histidine kinase compare
Pf6N2E2_2277 -1.7 -2.0 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2065 -1.7 -2.8 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_3074 -1.7 -1.6 FIG00960973: hypothetical protein compare
Pf6N2E2_3661 -1.7 -3.5 hypothetical protein compare
Pf6N2E2_2967 -1.7 -1.9 Cold shock protein CspA compare
Pf6N2E2_2962 -1.7 -3.1 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_2120 -1.7 -8.4 Alpha-amylase (EC 3.2.1.1) conserved
Pf6N2E2_2473 -1.7 -1.4 Major outer membrane lipoprotein I compare
Pf6N2E2_1128 -1.7 -2.4 Two-component response regulator compare
Pf6N2E2_469 -1.7 -2.2 lipoprotein, putative compare
Pf6N2E2_3586 -1.6 -5.7 NAD synthetase (EC 6.3.1.5) compare
Pf6N2E2_3665 -1.6 -1.1 serine/threonine protein kinase compare
Pf6N2E2_4611 -1.6 -3.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2527 -1.6 -2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4077 -1.6 -1.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2706 -1.6 -2.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_5723 -1.6 -7.4 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_4759 -1.5 -8.8 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_4464 -1.5 -2.3 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_4818 -1.5 -3.9 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_5316 -1.5 -1.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3868 -1.5 -4.8 Transcriptional regulator, LysR family compare
Pf6N2E2_5337 -1.5 -3.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_74 -1.5 -1.6 DedD protein compare
Pf6N2E2_2317 -1.5 -3.6 Putative analog of CcoH, COG3198 compare
Pf6N2E2_156 -1.5 -1.9 Carbon storage regulator compare
Pf6N2E2_1352 -1.5 -2.0 Cation transport ATPase compare
Pf6N2E2_4206 -1.4 -1.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2986 -1.4 -2.8 Transcriptional regulator, LuxR family compare
Pf6N2E2_2186 -1.4 -3.7 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_1656 -1.4 -2.4 hypothetical protein compare
Pf6N2E2_3257 -1.4 -1.9 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3460 -1.4 -0.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5676 -1.4 -2.1 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3635 -1.4 -2.3 FIG00953138: hypothetical protein compare
Pf6N2E2_2313 -1.4 -2.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5140 -1.4 -3.5 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_4277 -1.4 -6.9 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_1056 -1.4 -0.8 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2869 -1.4 -0.9 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3240 -1.3 -1.4 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_1806 -1.3 -1.7 hypothetical protein compare
Pf6N2E2_4762 -1.3 -2.0 Biotin synthesis protein BioH compare
Pf6N2E2_2753 -1.3 -1.7 HtrA protease/chaperone protein compare
Pf6N2E2_6045 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_5840 -1.3 -2.8 hypothetical protein compare
Pf6N2E2_6063 -1.3 -4.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_6064 -1.3 -3.8 2-methylaconitate isomerase compare
Pf6N2E2_4416 -1.3 -1.9 Tyrosine recombinase XerC compare
Pf6N2E2_2891 -1.3 -6.7 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_5527 -1.3 -1.4 Cold shock protein CspC compare
Pf6N2E2_2189 -1.3 -3.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1116 -1.2 -1.5 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_4624 -1.2 -0.8 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5727 -1.2 -4.1 FIG00955360: hypothetical protein compare
Pf6N2E2_2442 -1.2 -6.7 sensor histidine kinase/response regulator compare
Pf6N2E2_2835 -1.2 -1.4 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_4797 -1.2 -1.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2890 -1.2 -4.3 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_942 -1.2 -1.6 Mll6465 protein compare
Pf6N2E2_2892 -1.2 -6.1 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_149 -1.2 -5.3 Inner membrane component of tripartite multidrug resistance system compare
Pf6N2E2_3373 -1.2 -1.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5556 -1.2 -4.7 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
Pf6N2E2_3938 -1.2 -7.0 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_2193 -1.2 -3.7 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_2124 -1.2 -1.6 Mg(2+) transport ATPase protein C compare
Pf6N2E2_5300 -1.2 -6.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_302 -1.2 -3.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3786 -1.2 -2.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_3258 -1.2 -2.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_1305 -1.1 -1.4 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_2261 -1.1 -3.3 VacJ-like lipoprotein precursor compare
Pf6N2E2_5339 -1.1 -4.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3729 -1.1 -2.1 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) compare
Pf6N2E2_5494 -1.1 -2.7 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_4614 -1.1 -2.5 twitching motility protein PilH compare
Pf6N2E2_2071 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_4817 -1.1 -8.1 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_2069 -1.1 -1.7 FIG00953703: hypothetical protein compare
Pf6N2E2_5524 -1.1 -6.1 Outer membrane porin, OprD family compare
Pf6N2E2_4072 -1.1 -2.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3221 -1.1 -2.2 FIG00352444: hypothetical protein compare
Pf6N2E2_2552 -1.1 -3.4 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4615 -1.1 -1.2 type IV pili signal transduction protein PilI compare
Pf6N2E2_1165 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_5425 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_1085 -1.1 -2.3 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_5014 -1.1 -1.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_500 -1.1 -2.0 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_5500 -1.1 -2.4 MoxR-like ATPases compare
Pf6N2E2_4145 -1.1 -2.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_4813 -1.1 -4.7 Probable two-component sensor, near polyamine transporter compare
Pf6N2E2_5258 -1.1 -4.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2311 -1.1 -4.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1886 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_441 -1.0 -1.8 FIG00958773: hypothetical protein compare
Pf6N2E2_2588 -1.0 -2.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_1182 -1.0 -2.6 Transcriptional regulator, LysR family compare
Pf6N2E2_3666 -1.0 -2.2 InaA protein compare


Specific Phenotypes

For 17 genes in this experiment

For nitrogen source Gly-Glu in Pseudomonas fluorescens FW300-N2E2

For nitrogen source Gly-Glu across organisms