Experiment set8IT015 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 10mM Glycine

200 most important genes:

  gene name fitness t score description  
MMP_RS06840 -4.0 -1.3 DNA-directed RNA polymerase subunit N compare
MMP_RS06355 -4.0 -3.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06350 -3.7 -10.0 HesA/MoeB/ThiF family protein compare
MMP_RS07635 -3.5 -11.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS05515 -3.5 -10.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS09055 -3.4 -1.5 CAP domain-containing protein compare
MMP_RS03015 -3.4 -14.1 GTP 3' 8-cyclase MoaA compare
MMP_RS01175 -3.4 -7.9 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05500 -3.4 -11.2 2-isopropylmalate synthase compare
MMP_RS06680 -3.2 -17.4 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05875 -3.1 -8.5 hydroxyethylthiazole kinase compare
MMP_RS08300 -3.1 -1.7 metal-sulfur cluster assembly factor compare
MMP_RS07555 -3.0 -1.1 monovalent cation/H+ antiporter subunit E compare
MMP_RS05555 -3.0 -1.7 DUF4040 domain-containing protein compare
MMP_RS06685 -2.9 -16.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS05550 -2.9 -0.7 cation:proton antiporter compare
MMP_RS06720 -2.8 -11.4 response regulator transcription factor compare
MMP_RS06715 -2.8 -17.2 cache domain-containing protein compare
MMP_RS06345 -2.7 -14.3 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06700 -2.7 -13.2 hypothetical protein compare
MMP_RS01195 -2.7 -1.7 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03035 -2.7 -4.8 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06705 -2.6 -9.6 formate/nitrite transporter family protein compare
MMP_RS04605 -2.6 -5.7 cobalt ECF transporter T component CbiQ compare
MMP_RS03315 -2.6 -1.6 ferrous iron transport protein A compare
MMP_RS04900 -2.5 -18.8 hypothetical protein compare
MMP_RS07185 -2.5 -13.5 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS05425 -2.4 -4.5 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05095 -2.3 -6.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS01500 -2.3 -3.3 CBS domain-containing protein compare
MMP_RS05060 -2.3 -11.4 AAA family ATPase compare
MMP_RS01085 -2.3 -2.3 hypothetical protein compare
MMP_RS04620 -2.2 -12.4 cobalt transporter CbiM compare
MMP_RS03640 -2.2 -4.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02010 -2.2 -9.8 PHP domain-containing protein compare
MMP_RS06105 -2.2 -10.3 hydrogenase maturation peptidase HycI compare
MMP_RS08165 -2.2 -2.9 phosphoglycerate dehydrogenase compare
MMP_RS01220 -2.1 -8.6 hypothetical protein compare
MMP_RS05930 -2.1 -3.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS07845 -2.1 -2.4 LL-diaminopimelate aminotransferase compare
MMP_RS05090 -2.1 -8.8 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS02355 -2.1 -3.7 30S ribosomal protein S27ae compare
MMP_RS07365 -2.1 -13.5 2-phosphoglycerate kinase compare
MMP_RS02195 -2.1 -4.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS05085 -2.1 -9.8 AAA family ATPase compare
MMP_RS05100 -2.1 -15.2 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS08720 -2.1 -2.1 4Fe-4S binding protein compare
MMP_RS00040 -2.1 -6.8 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS05055 -1.9 -12.0 DUF166 domain-containing protein compare
MMP_RS08745 -1.9 -7.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS05075 -1.9 -12.1 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS06975 -1.9 -2.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS01545 -1.9 -1.3 CBS domain-containing protein compare
MMP_RS05765 -1.9 -8.3 M42 family metallopeptidase compare
MMP_RS07735 -1.9 -1.0 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04615 -1.9 -2.7 PDGLE domain-containing protein compare
MMP_RS06175 -1.9 -6.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS05080 -1.9 -9.9 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS01020 -1.9 -1.3 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS07445 -1.8 -6.3 helix-turn-helix domain-containing protein compare
MMP_RS03435 -1.8 -1.9 ketol-acid reductoisomerase compare
MMP_RS04870 -1.8 -6.1 TIGR02253 family HAD-type hydrolase compare
MMP_RS04875 -1.8 -5.0 energy-converting hydrogenase B subunit P compare
MMP_RS08790 -1.8 -2.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS08330 -1.8 -3.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS07730 -1.8 -2.1 pyruvate synthase subunit beta compare
MMP_RS01265 -1.8 -1.9 hypothetical protein compare
MMP_RS07525 -1.8 -8.0 4Fe-4S binding protein compare
MMP_RS05070 -1.7 -7.9 4Fe-4S dicluster domain-containing protein compare
MMP_RS05265 -1.7 -2.4 2-isopropylmalate synthase compare
MMP_RS00295 -1.7 -2.2 gamma carbonic anhydrase family protein compare
MMP_RS09020 -1.7 -1.9 hypothetical protein compare
MMP_RS07575 -1.7 -5.4 RNA ligase partner protein compare
MMP_RS04125 -1.7 -3.1 TetR/AcrR family transcriptional regulator compare
MMP_RS08320 -1.7 -7.4 molybdopterin molybdotransferase MoeA compare
MMP_RS01005 -1.7 -1.3 riboflavin synthase compare
MMP_RS06295 -1.7 -6.0 methanogenesis marker 14 protein compare
MMP_RS02800 -1.7 -4.7 nucleotidyltransferase domain-containing protein compare
MMP_RS07630 -1.6 -1.5 ATP-binding cassette domain-containing protein compare
MMP_RS00305 -1.6 -2.1 phosphoribosyl-ATP diphosphatase compare
MMP_RS05065 -1.6 -3.5 CooT family nickel-binding protein compare
MMP_RS00300 -1.6 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS00685 -1.6 -4.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08460 -1.5 -2.3 proteasome-activating nucleotidase compare
MMP_RS07545 -1.5 -1.3 HTH domain-containing protein compare
MMP_RS01980 -1.5 -10.6 trimeric intracellular cation channel family protein compare
MMP_RS02340 -1.5 -1.9 DNA-directed RNA polymerase subunit E'' compare
MMP_RS05540 -1.5 -3.1 hypothetical protein compare
MMP_RS01985 -1.5 -5.7 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS04890 -1.5 -0.8 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS03145 -1.4 -5.8 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS02885 -1.4 -9.3 molybdopterin biosynthesis protein compare
MMP_RS03960 -1.4 -1.1 hypothetical protein compare
MMP_RS03025 -1.4 -5.5 molybdenum cofactor guanylyltransferase compare
MMP_RS07720 -1.4 -7.1 4Fe-4S binding protein compare
MMP_RS02170 -1.3 -3.3 CBS domain-containing protein compare
MMP_RS08940 -1.3 -1.0 MetS family NSS transporter small subunit compare
MMP_RS08615 -1.3 -1.6 flagellar protein G compare
MMP_RS00695 -1.3 -1.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06400 -1.3 -1.6 4Fe-4S binding protein compare
MMP_RS00130 -1.3 -1.1 nickel-responsive transcriptional regulator NikR compare
MMP_RS08820 -1.3 -5.5 hypothetical protein compare
MMP_RS06865 -1.3 -1.7 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS01755 -1.3 -1.2 DUF2097 domain-containing protein compare
MMP_RS04585 -1.3 -7.2 AIR synthase related protein compare
MMP_RS06285 -1.3 -2.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02280 -1.3 -0.8 DUF211 domain-containing protein compare
MMP_RS07005 -1.3 -0.5 4Fe-4S binding protein compare
MMP_RS01075 -1.2 -1.4 hypothetical protein compare
MMP_RS06200 -1.2 -4.9 M24 family metallopeptidase compare
MMP_RS01610 -1.2 -2.7 hypothetical protein compare
MMP_RS06730 -1.2 -1.3 phosphopantothenate/pantothenate synthetase compare
MMP_RS01795 -1.2 -1.3 methanogenesis marker 6 protein compare
MMP_RS00570 -1.2 -1.2 protein-L-isoaspartate O-methyltransferase compare
MMP_RS07380 -1.1 -1.5 transcription elongation factor Spt5 compare
MMP_RS01365 -1.1 -1.9 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS00290 -1.1 -3.9 hypothetical protein compare
MMP_RS04790 -1.1 -5.6 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS02345 -1.1 -2.7 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01700 -1.1 -0.6 dihydroxy-acid dehydratase compare
MMP_RS05865 -1.1 -1.0 hypothetical protein compare
MMP_RS08635 -1.1 -1.3 UbiA family prenyltransferase compare
MMP_RS01440 -1.1 -2.6 NAAT family transporter compare
MMP_RS07960 -1.1 -4.9 sugar phosphate isomerase/epimerase compare
MMP_RS08715 -1.1 -1.6 formylmethanofuran dehydrogenase subunit B compare
MMP_RS00965 -1.1 -1.6 hypothetical protein compare
MMP_RS06485 -1.1 -0.9 zinc ribbon domain-containing protein compare
MMP_RS06625 -1.1 -1.6 DNA primase compare
MMP_RS00060 -1.1 -1.3 3-dehydroquinate synthase II compare
MMP_RS04775 -1.0 -2.4 adenosylhomocysteinase compare
MMP_RS04090 -1.0 -1.9 hypothetical protein compare
MMP_RS06340 -1.0 -4.2 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08350 -1.0 -0.7 hypothetical protein compare
MMP_RS03140 -1.0 -6.1 hypothetical protein compare
MMP_RS05950 -1.0 -3.2 nickel-dependent hydrogenase large subunit compare
MMP_RS05850 -1.0 -2.4 Ldh family oxidoreductase compare
MMP_RS01445 -1.0 -3.6 hypothetical protein compare
MMP_RS06315 -1.0 -0.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06630 -1.0 -0.8 UPF0058 family protein compare
MMP_RS05845 -1.0 -1.4 tRNA-intron lyase compare
MMP_RS00620 -1.0 -3.5 4Fe-4S binding protein compare
MMP_RS00555 -1.0 -3.3 MFS transporter compare
MMP_RS07725 -1.0 -2.5 4Fe-4S dicluster domain-containing protein compare
MMP_RS02875 -1.0 -4.4 chorismate pyruvate-lyase family protein compare
MMP_RS02930 -1.0 -1.4 class I SAM-dependent methyltransferase compare
MMP_RS02175 -1.0 -0.6 DUF1611 domain-containing protein compare
MMP_RS08725 -1.0 -1.5 Ni/Fe hydrogenase subunit alpha compare
MMP_RS03600 -1.0 -1.4 triose-phosphate isomerase compare
MMP_RS01240 -1.0 -1.5 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS02545 -0.9 -1.7 hypothetical protein compare
MMP_RS02240 -0.9 -2.0 methanogenesis marker 7 protein compare
MMP_RS03475 -0.9 -0.6 hypothetical protein compare
MMP_RS03550 -0.9 -1.3 DUF2124 domain-containing protein compare
MMP_RS02165 -0.9 -3.2 tRNA-dihydrouridine synthase compare
MMP_RS04780 -0.9 -2.3 ribonuclease P compare
MMP_RS07710 -0.9 -3.5 cell division protein FtsZ compare
MMP_RS00345 -0.9 -2.6 DUF2666 domain-containing protein compare
MMP_RS08750 -0.9 -1.3 hypothetical protein compare
MMP_RS07535 -0.9 -4.4 4Fe-4S binding protein compare
MMP_RS01790 -0.9 -1.8 restriction endonuclease compare
MMP_RS07415 -0.9 -3.0 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS01830 -0.9 -1.1 tRNA-Val compare
MMP_RS02045 -0.9 -1.2 tRNA-Met compare
MMP_RS01250 -0.9 -2.9 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS02235 -0.9 -3.3 CBS domain-containing protein compare
MMP_RS04410 -0.9 -1.3 hypothetical protein compare
MMP_RS04255 -0.9 -2.7 coenzyme F420 hydrogenase subunit beta compare
MMP_RS03080 -0.9 -1.5 universal stress protein compare
MMP_RS05985 -0.9 -1.0 hypothetical protein compare
MMP_RS06020 -0.9 -2.6 archaeoflavoprotein AfpA compare
MMP_RS03120 -0.8 -1.1 hypothetical protein compare
MMP_RS06270 -0.8 -3.0 TIGR00300 family protein compare
MMP_RS00535 -0.8 -1.1 TIGR00375 family protein compare
MMP_RS06885 -0.8 -1.6 50S ribosome-binding GTPase compare
MMP_RS05440 -0.8 -3.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS08105 -0.8 -2.9 6-carboxyhexanoate--CoA ligase compare
MMP_RS03445 -0.8 -0.7 methanogenesis marker 17 protein compare
MMP_RS01255 -0.8 -1.4 amino acid ABC transporter ATP-binding protein compare
MMP_RS01725 -0.8 -3.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS03485 -0.8 -2.8 TIGR00267 family protein compare
MMP_RS07200 -0.8 -3.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07600 -0.8 -1.4 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS00455 -0.8 -2.9 orotate phosphoribosyltransferase-like protein compare
MMP_RS06710 -0.8 -3.3 selenium-binding protein compare
MMP_RS07705 -0.8 -2.8 transcriptional regulator compare
MMP_RS01800 -0.8 -2.5 TIGR00303 family protein compare
MMP_RS06925 -0.8 -1.3 ribonuclease VapC4 compare
MMP_RS01745 -0.8 -2.5 AMP phosphorylase compare
MMP_RS08645 -0.8 -2.9 UPF0179 family protein compare
MMP_RS01380 -0.7 -2.4 PHP domain-containing protein compare
MMP_RS07435 -0.7 -1.3 GMP synthase subunit A compare
MMP_RS01570 -0.7 -0.9 hypothetical protein compare
MMP_RS03305 -0.7 -2.2 winged helix-turn-helix domain-containing protein compare
MMP_RS06120 -0.7 -1.2 UPF0147 family protein compare
MMP_RS03685 -0.7 -2.7 Mrp/NBP35 family ATP-binding protein compare
MMP_RS00115 -0.7 -4.2 radical SAM protein compare
MMP_RS05430 -0.7 -2.0 TIGR00288 family NYN domain-containing protein compare
MMP_RS00985 -0.7 -2.3 CDC48 family AAA ATPase compare
MMP_RS03565 -0.7 -2.4 uracil phosphoribosyltransferase compare
MMP_RS01330 -0.7 -4.6 DHH family phosphoesterase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Glycine across organisms