Experiment set8IT015 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

Pyruvate (fermenting) with Na2S as sulfur source

200 most detrimental genes:

  gene name fitness t score description  
DVU1631 +2.9 15.3 conserved hypothetical protein (TIGR) compare
DVU2747 +2.9 21.2 hypothetical protein (TIGR) compare
DVU2045 +1.7 8.9 hypothetical protein (TIGR) compare
DVU2894 flrA +1.6 10.9 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU0311 +1.5 7.6 flagellar assembly protein FliH, putative (TIGR) compare
DVU0315 flgC +1.3 7.7 flagellar basal-body rod protein FlgC (TIGR) compare
DVU2284 +1.3 6.3 hypothetical protein (TIGR) compare
DVU0044 fliP +1.3 8.8 flagellar biosynthetic protein fliP (TIGR) compare
DVU0313 fliF +1.2 8.3 flagellar M-ring protein FliF (TIGR) compare
DVU0047 +1.2 4.4 flagellar protein FliL (TIGR) compare
DVU1863 +1.2 4.4 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU0316 flgB +1.2 4.3 flagellar basal-body rod protein FlgB (TIGR) compare
DVU0310 fliI +1.2 8.4 flagellum-specific ATP synthase FliI (TIGR) compare
DVU0045 +1.2 3.3 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU1080 +1.1 2.1 iron-sulfur cluster-binding protein (TIGR) compare
DVU3233 flhB +1.1 7.6 flagellar biosynthetic protein FlhB (TIGR) compare
DVU0314 fliE +1.0 3.9 flagellar basal body component FliE (TIGR) compare
DVU3232 flhA +1.0 7.7 flagellar biosynthetic protein FlhA (TIGR) compare
DVU0793 +1.0 6.4 hypothetical protein (TIGR) compare
DVU0516 flgI +1.0 6.1 flagellar P-ring protein FlgI (TIGR) compare
DVU0043 fliQ +1.0 5.8 flagellar biosynthetic protein FliQ (TIGR) compare
DVU1748 +1.0 0.8 conserved hypothetical protein (TIGR) compare
DVU2391 +1.0 0.8 hypothetical protein (TIGR) compare
DVU0257 +1.0 1.8 acetyltransferase, GNAT family (TIGR) compare
DVU0513 flgG +1.0 6.2 flagellar basal-body rod protein FlgG (TIGR) compare
DVU3234 +1.0 3.3 flagellar biosynthetic protein FliR (TIGR) compare
DVU0339 serA +0.9 5.0 D-isomer specific 2-hydroxyacid dehydrogenase family protein (TIGR) compare
DVU1862 +0.9 3.9 GGDEF domain protein (TIGR) compare
DVU0312 fliG +0.9 5.3 flagellar motor switch protein FliG (TIGR) compare
DVU0515 flgH +0.9 5.6 flagellar L-ring protein FlgH (TIGR) compare
DVU0514 +0.9 4.9 FlgA family protein (TIGR) compare
DVU2055 metG +0.9 1.0 methionyl-tRNA synthetase (TIGR) compare
DVU0910 fliM +0.9 5.0 flagellar motor switch protein FliM (TIGR) compare
DVU1875 +0.9 1.9 dafA protein (TIGR) compare
DVU1063 flrC +0.9 5.4 transcriptional regulatory protein (TIGR) compare
DVU0046 fliN +0.9 3.5 flagellar motor switch protein FliN (TIGR) compare
DVU2867 +0.9 1.0 holin (TIGR) compare
DVU0512 flgF +0.9 3.9 flagellar basal-body rod protein, putative (TIGR) compare
DVU3225 +0.8 3.8 hypothetical protein (TIGR) compare
DVU3229 fliA +0.8 3.5 RNA polymerase sigma factor for flagellar operon FliA (TIGR) compare
DVU2896 +0.8 6.2 TPR domain protein (TIGR) compare
DVU3387 +0.8 5.3 hypothetical protein (TIGR) compare
DORF28817 +0.8 2.5 no description compare
DVU1726 +0.8 1.1 hypothetical protein (TIGR) compare
DVU2609 +0.8 4.0 chemotaxis MotB protein, putative (TIGR) compare
DVU0410 +0.8 4.2 hypothetical protein (TIGR) compare
DVU1337 lon +0.8 5.4 ATP-dependent protease La (TIGR) compare
DVU1407 +0.8 2.7 radical SAM domain protein (TIGR) compare
DVU1154 +0.8 0.7 hypothetical protein (TIGR) compare
DVU0858 +0.8 4.4 lipoprotein, putative (TIGR) compare
DVU2236 +0.8 0.6 hypothetical protein (TIGR) compare
DVU0301 +0.8 0.9 hypothetical protein (TIGR) compare
DVU1465 +0.7 5.2 CgeB family protein (TIGR) compare
DVU2831 +0.7 1.8 hypothetical protein (TIGR) compare
DORF8192 +0.7 1.1 SEED: FIG00606834: hypothetical protein compare
DVU0913 +0.7 2.3 conserved hypothetical protein (TIGR) compare
DVU1449 +0.7 1.8 anti-anti-sigma factor, putative (TIGR) compare
DVU0970 +0.7 3.0 lipoprotein, putative (TIGR) compare
DVU2608 motA-3 +0.7 3.8 chemotaxis protein MotA (TIGR) compare
DVU1796 +0.7 1.1 hypothetical protein (TIGR) compare
DVU3299 +0.7 2.2 membrane protein, putative (TIGR) compare
DVU3329 +0.7 1.2 hypothetical protein (TIGR) compare
DVU0519 +0.7 5.1 flagellar hook-associated protein FlgK, putative (TIGR) compare
DVU0629 +0.7 3.6 transcriptional regulator, TetR family (TIGR) compare
DVU0703 lepA +0.7 0.9 GTP-binding protein LepA (TIGR) compare
DVU2846 +0.7 1.6 hypothetical protein (TIGR) compare
DORF12455 +0.7 1.0 SEED: helix-turn-helix protein, CopG family compare
DVU3227 +0.7 3.4 flagellar basal body-associated protein, putative (TIGR) compare
DVU3133 glpF +0.7 1.4 glycerol uptake facilitator protein (TIGR) compare
DVU0912 +0.7 2.1 conserved domain protein (TIGR) compare
DVU0863 +0.7 4.6 flagellar hook-associated protein 2, putative (TIGR) compare
DVU1445 +0.7 3.8 flagellar hook-length control domain protein (TIGR) compare
DVU1838 trxB-2 +0.6 1.9 thioredoxin reductase (TIGR) compare
DVU1791 +0.6 1.3 GatB/Yqey family protein (TIGR) compare
DVU3177 +0.6 1.8 hypothetical protein (TIGR) compare
DVU0524 +0.6 1.7 hypothetical protein (TIGR) compare
DVU0307 +0.6 3.9 flagella basal body rod domain protein (TIGR) compare
DVU3117 +0.6 0.9 hypothetical protein (TIGR) compare
DVU2198 +0.6 0.5 hypothetical protein (TIGR) compare
DVU0698 rfbC +0.6 3.3 dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) compare
DVU2112 +0.6 1.8 hypothetical protein (TIGR) compare
DVU2107 +0.6 3.1 hypothetical protein (TIGR) compare
DVU0368 +0.6 1.5 hypothetical protein (TIGR) compare
DVUA0070 +0.6 1.4 conserved domain protein (TIGR) compare
DVU2669 +0.6 1.2 conserved domain protein (TIGR) compare
DVU2774 +0.6 1.8 CBS domain protein/ACT domain protein (TIGR) compare
DVU1676 secG +0.6 2.1 preprotein translocase, SecG subunit (TIGR) compare
DVU0862 +0.6 2.4 flagellar protein FliS/hypothetical protein, fusion (TIGR) compare
DVU2183 +0.6 0.9 hypothetical protein (TIGR) compare
DVU0533 hmcD +0.6 0.7 HmcD, 5.8 kd protein in hmc operon (voordouw) compare
DVU0520 +0.5 4.0 flagellar hook-associated protein FlgL, putative (TIGR) compare
DVU0522 yviF +0.5 1.7 conserved hypothetical protein (TIGR) compare
DVU2044 +0.5 0.9 hypothetical protein (TIGR) compare
DORF13021 +0.5 1.1 no description compare
DVU2638 +0.5 2.6 conserved domain protein (TIGR) compare
DVU3360 parB +0.5 3.1 ParB family protein (TIGR) compare
DVU2855 +0.5 1.2 tail/DNA circulation protein, putative (TIGR) compare
DVU0684 hflK +0.5 2.1 hflK protein, putative (TIGR) compare
DVU3223 aspB +0.5 2.7 aspartate aminotransferase (TIGR) compare
DVU1629 yfiA +0.5 2.3 ribosomal subunit interface protein (TIGR) compare
DVU2606 +0.5 1.7 hypothetical protein (TIGR) compare
DVU1283 galU +0.5 2.7 UTP-glucose-1-phosphate uridylyltransferase (TIGR) compare
DVU2012 +0.5 0.5 hypothetical protein (TIGR) compare
DVU1589 +0.5 2.9 hypothetical protein (TIGR) compare
DVU1359 +0.5 2.8 hypothetical protein (TIGR) compare
DVU3318 +0.5 1.6 hypothetical protein (TIGR) compare
DORF10920 +0.5 1.8 no description compare
DORF32061 +0.5 1.7 SEED: FIG00604583: hypothetical protein compare
DVU1076 +0.5 1.2 conserved hypothetical protein TIGR00278 (TIGR) compare
DVU0989 +0.5 1.4 periplasmic divalent cation tolerance protein cutA, putative (TIGR) compare
DVU1944 oorD +0.5 0.7 pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative (TIGR) compare
DVU0898 +0.5 2.9 conserved hypothetical protein (TIGR) compare
DVU1479 +0.5 0.3 conserved hypothetical protein (TIGR) compare
DVU2684 +0.5 1.4 hypothetical protein (TIGR) compare
DVU2592 +0.5 2.4 hypothetical protein (TIGR) compare
DVU1632 +0.5 1.6 PTS system, IIA component (TIGR) compare
DVU2891 nikR +0.5 1.5 nickel responsive regulator (TIGR) compare
DVU1444 flgD +0.5 3.0 basal-body rod modification protein FlgD (TIGR) compare
DVU1967 rrf2 +0.5 2.4 transcriptional regulator, rrf2 protein, putative (TIGR) compare
DVU0518 +0.5 2.2 hypothetical protein (TIGR) compare
DVU0859 +0.5 2.5 hypothetical protein (TIGR) compare
DVU2038 +0.5 1.8 hypothetical protein (TIGR) compare
DVU0683 +0.5 3.0 hflC protein, putative (TIGR) compare
DVU0281 +0.5 1.3 exopolysaccharide biosynthesis protein, putative (TIGR) compare
DVU0484 +0.5 1.5 ABC transporter, ATP-binding protein (TIGR) compare
DVU1251 +0.5 0.8 hypothetical protein (TIGR) compare
DVU0298 +0.5 1.6 hypothetical protein (TIGR) compare
DORF47110 +0.5 1.2 no description compare
DVU0576 msrB +0.5 2.3 peptide methionine sulfoxide reductase MsrB (TIGR) compare
DVU0920 atpI +0.5 1.0 ATP synthase protein I (TIGR) compare
DVU0202 +0.4 1.5 holin (TIGR) compare
DVU1265 +0.4 3.3 hypothetical protein (TIGR) compare
DVU0715 livG +0.4 2.1 branched-chain amino acid ABC transporter, ATP binding protein (TIGR) compare
DVU2999 +0.4 1.8 methionyl-tRNA formyltransferase, putative (TIGR) compare
DVU2847 +0.4 1.5 hypothetical protein (TIGR) compare
DVU1193 radC +0.4 2.0 DNA repair protein RadC (TIGR) compare
DVU2583 +0.4 1.9 lipoprotein, putative (TIGR) compare
DVU0880 +0.4 1.4 hypothetical protein (TIGR) compare
DVU1126 +0.4 2.5 lipoprotein, putative (TIGR) compare
DVU3260 +0.4 0.9 hypothetical protein (TIGR) compare
DVU1536 mltC +0.4 2.0 transglycosylase, SLT family (TIGR) compare
DORF807 +0.4 0.9 no description compare
DVU2220 +0.4 0.8 conserved hypothetical protein (TIGR) compare
DVU2947 +0.4 1.8 anaerobic ribonucleoside-triphosphate reductase, putative (TIGR) compare
DVU3134 glpK +0.4 1.9 glycerol kinase (TIGR) compare
DVU0618 +0.4 0.4 hypothetical protein (TIGR) compare
DVU_tRNA-Leu-4 tRNA-Leu +0.4 1.0 tRNA with anticodon GAG for Leu (VIMSS-AUTO) compare
DORF12461 +0.4 0.7 SEED: HigA protein (antitoxin to HigB) compare
DVU1452 dtd +0.4 1.5 D-tyrosyl-tRNA(Tyr) deacylase (TIGR) compare
DVU1236 +0.4 1.7 amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU1828 gidA +0.4 1.3 glucose inhibited division protein A (TIGR) compare
DVU0603 +0.4 0.5 hypothetical protein (TIGR) compare
DVU1401 +0.4 2.1 membrane protein, putative (TIGR) compare
DVU0829 ptsI +0.4 1.8 phosphoenolpyruvate-protein phosphotransferase (TIGR) compare
DVU0295 +0.4 2.9 amine oxidase, flavin-containing (TIGR) compare
DVU2761 +0.4 0.3 hypothetical protein (TIGR) compare
DVU0333 +0.4 1.7 hypothetical protein (TIGR) compare
DVU1491 +0.4 0.6 conserved hypothetical protein (TIGR) compare
DVU2021 +0.4 1.4 hypothetical protein (TIGR) compare
DVU0097 potB +0.4 1.0 polyamine ABC transporter, permease protein (TIGR) compare
DVUA0141 +0.4 1.9 hypothetical protein (TIGR) compare
DVU2566 lysA-2 +0.4 0.8 diaminopimelate decarboxylase (TIGR) compare
DVU2889 +0.4 1.0 BioY family protein (TIGR) compare
DVU2659 +0.4 1.1 exsB protein (TIGR) compare
DVU2631 +0.4 0.9 hypothetical protein (TIGR) compare
DVU2672 +0.4 2.5 glycine transporter (from data) compare
DVU1068 +0.4 1.5 branched-chain amino acid ABC transporter, permease protein (TIGR) compare
DVU0238 +0.4 0.7 hypothetical protein (TIGR) compare
DVU3153 +0.4 1.1 hypothetical protein (TIGR) compare
DVU1419 atoC +0.4 1.5 sigma-54 dependent transcriptional regulator/response regulator (TIGR) compare
DVU2562 acpP +0.4 1.7 acyl carrier protein (TIGR) compare
DVU2578 +0.4 2.1 response regulator (TIGR) compare
DVU2211 +0.4 2.6 hypothetical protein (TIGR) compare
DVU1275 +0.4 1.9 hypothetical protein (TIGR) compare
DVU1708 +0.4 1.4 conserved hypothetical protein (TIGR) compare
DVU1363 rfbD +0.4 1.9 dTDP-4-dehydrorhamnose reductase (TIGR) compare
DVU0501 +0.4 2.0 conserved hypothetical protein (TIGR) compare
DVU0974 +0.4 1.6 hypothetical protein (TIGR) compare
DVU1567 +0.4 1.4 hypothetical protein (TIGR) compare
DVUA0104.1 +0.4 1.4 no description compare
DVU0260 mtrA +0.4 2.6 response regulator (TIGR) compare
DVU2441 hspC +0.4 0.6 heat shock protein, Hsp20 family (TIGR) compare
DVU0486 +0.4 1.1 hypothetical protein (TIGR) compare
DVU1986 +0.4 2.0 conserved hypothetical protein (TIGR) compare
DVU0764 hup-2 +0.4 1.1 DNA-binding protein HU (TIGR) compare
DVU1810 +0.4 0.7 hypothetical protein (TIGR) compare
DVU1940 glpA +0.4 1.9 anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative (TIGR) compare
DVU2532 +0.4 1.5 transcriptional regulator, MerR family (TIGR) compare
DVU0821 +0.4 0.8 conserved hypothetical protein (TIGR) compare
DVU2192 +0.4 1.8 hypothetical protein (TIGR) compare
DVU1078 +0.4 2.2 R3H domain protein (TIGR) compare
DVU1735 +0.4 1.1 hypothetical protein (TIGR) compare
DVU1593 cheY-1 +0.4 1.0 chemotaxis protein CheY (TIGR) compare
DVU3020 +0.4 1.4 hypothetical protein (TIGR) compare
DVU0077 +0.4 2.2 conserved hypothetical protein (TIGR) compare
DVU2150 dksA +0.4 0.4 dnaK suppressor protein, putative (TIGR) compare
DVU2801 +0.4 1.7 hypothetical protein (TIGR) compare
DVU1260 +0.3 2.2 outer membrane protein P1, putative (TIGR) compare
DVU0359 +0.3 1.2 HesB-like domain (TIGR) compare
DORF768 +0.3 0.9 no description compare


Specific Phenotypes

For 2 genes in this experiment

For fermentative growth Sodium pyruvate in Desulfovibrio vulgaris Hildenborough JW710

For fermentative growth Sodium pyruvate across organisms