Experiment set8IT013 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2086.1 -4.4 -3.0 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.2011.1 -4.3 -4.1 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4481.1 -3.7 -8.9 hypothetical protein compare
Xcc-8004.659.1 -3.0 -4.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.451.1 -2.8 -7.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.957.1 -2.6 -7.4 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1615.1 -2.6 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.2012.1 -2.5 -9.2 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.3395.1 -2.4 -3.2 Transcriptional regulator, GntR family compare
Xcc-8004.4620.1 -2.3 -9.1 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3324.1 -2.3 -4.8 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.1967.1 -2.3 -10.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.601.1 -2.2 -7.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4112.1 -2.2 -4.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1962.1 -2.1 -5.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.3281.1 -2.1 -7.2 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.2387.1 -2.1 -4.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.4439.1 -2.1 -10.6 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.657.1 -2.1 -7.5 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.1205.1 -2.0 -3.1 hypothetical protein compare
Xcc-8004.4073.1 -2.0 -10.8 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.1050.1 -1.9 -5.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.1010.1 -1.9 -7.3 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.4398.1 -1.9 -7.4 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.622.1 -1.9 -4.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.1964.1 -1.9 -10.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.5020.1 -1.8 -5.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.271.1 -1.8 -3.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1676.1 -1.8 -7.4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.2319.1 -1.7 -4.1 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.1060.1 -1.7 -7.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.3855.1 -1.7 -8.1 FIG01209965: hypothetical protein compare
Xcc-8004.3049.1 -1.7 -8.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.618.1 -1.7 -3.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.621.1 -1.7 -5.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.4430.1 -1.7 -1.6 General secretion pathway protein G compare
Xcc-8004.1437.1 -1.6 -6.0 Kup system potassium uptake protein compare
Xcc-8004.608.1 -1.6 -7.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.4596.1 -1.5 -7.8 hypothetical protein compare
Xcc-8004.2945.1 -1.5 -3.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.3346.1 -1.5 -3.1 hypothetical protein compare
Xcc-8004.1059.1 -1.5 -6.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.1053.1 -1.5 -5.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.3282.1 -1.5 -6.7 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.1049.1 -1.5 -6.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.4503.1 -1.5 -4.9 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.2217.1 -1.5 -3.8 FIG01209779: hypothetical protein compare
Xcc-8004.1763.1 -1.5 -3.5 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.4738.1 -1.5 -8.2 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.3898.1 -1.5 -1.4 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.2318.1 -1.5 -6.2 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.3536.1 -1.5 -5.5 FIG01210913: hypothetical protein compare
Xcc-8004.1511.1 -1.4 -2.1 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.130.1 -1.4 -5.7 hypothetical protein compare
Xcc-8004.43.1 -1.4 -7.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.1434.1 -1.4 -1.8 FIG000859: hypothetical protein YebC compare
Xcc-8004.2316.1 -1.4 -8.3 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.2320.1 -1.4 -4.8 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.1959.1 -1.4 -1.6 hypothetical protein compare
Xcc-8004.4062.1 -1.3 -6.8 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Xcc-8004.4170.1 -1.3 -1.9 LSU ribosomal protein L25p compare
Xcc-8004.3726.1 -1.3 -2.2 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.1900.1 -1.3 -2.9 Acyl-CoA thioester hydrolase compare
Xcc-8004.44.1 -1.3 -11.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.3322.1 -1.3 -1.6 FIG01211446: hypothetical protein compare
Xcc-8004.1058.1 -1.2 -2.9 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.2879.1 -1.2 -1.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.577.1 -1.2 -3.5 Transcriptional regulator, MarR family compare
Xcc-8004.2921.1 -1.2 -2.5 ferrous iron transport protein compare
Xcc-8004.1955.1 -1.2 -4.4 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1616.1 -1.1 -1.4 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.4737.1 -1.1 -3.9 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.2944.1 -1.1 -5.8 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.812.1 -1.1 -3.0 histidine kinase-response regulator hybrid protein compare
Xcc-8004.2385.1 -1.1 -7.4 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.1436.1 -1.1 -1.6 Holliday junction DNA helicase RuvA compare
Xcc-8004.3794.1 -1.1 -1.8 Mobile element protein compare
Xcc-8004.2943.1 -1.1 -3.8 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.4700.1 -1.1 -2.1 FIG01210206: hypothetical protein compare
Xcc-8004.3208.1 -1.1 -1.4 Methyltransferase type 12 compare
Xcc-8004.545.1 -1.1 -1.5 Nucleoside-diphosphate-sugar epimerases compare
Xcc-8004.2412.1 -1.1 -7.0 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.4514.1 -1.0 -7.3 Glycosyltransferase compare
Xcc-8004.2323.1 -1.0 -4.5 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.610.1 -1.0 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4507.1 -1.0 -4.4 Glycosyltransferase compare
Xcc-8004.2219.1 -1.0 -4.0 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.4486.1 -1.0 -7.3 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.1241.1 -1.0 -3.4 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.2977.1 -1.0 -8.3 hypothetical protein compare
Xcc-8004.1359.1 -1.0 -3.7 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3283.1 -1.0 -5.7 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.2346.1 -1.0 -1.7 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.3211.1 -1.0 -2.0 protein of unknown function DUF88 compare
Xcc-8004.3537.1 -1.0 -4.5 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.846.1 -0.9 -2.4 Protein of unknown function DUF484 compare
Xcc-8004.3859.1 -0.9 -2.3 Two-component system regulatory protein compare
Xcc-8004.1266.1 -0.9 -2.3 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.4671.1 -0.9 -3.4 FIG01212254: hypothetical protein compare
Xcc-8004.4026.1 -0.9 -3.9 FIG01209666: hypothetical protein compare
Xcc-8004.4485.1 -0.9 -5.6 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.401.1 -0.9 -1.8 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.1026.1 -0.9 -2.0 Tricarboxylate transport transcriptional regulator TctD compare
Xcc-8004.4739.1 -0.9 -3.2 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.323.1 -0.9 -1.9 FIG01210738: hypothetical protein compare
Xcc-8004.5363.1 -0.9 -2.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.3861.1 -0.9 -3.8 FIG01210504: hypothetical protein compare
Xcc-8004.1097.1 -0.9 -2.3 FIG01210707: hypothetical protein compare
Xcc-8004.4025.1 -0.9 -5.7 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.5343.1 -0.9 -4.2 hypothetical protein compare
Xcc-8004.1372.1 -0.9 -3.3 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4248.1 -0.9 -2.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.4948.1 -0.9 -1.5 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.3742.1 -0.9 -2.1 Type III effector compare
Xcc-8004.2420.1 -0.9 -4.5 PHA synthase subunit compare
Xcc-8004.2074.1 -0.9 -3.0 Transcriptional regulator, MerR family compare
Xcc-8004.2861.1 -0.9 -1.5 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.1282.1 -0.9 -3.1 sulfur deprivation response regulator compare
Xcc-8004.1685.1 -0.9 -1.1 hypothetical protein compare
Xcc-8004.3394.1 -0.9 -1.8 hypothetical protein compare
Xcc-8004.4340.1 -0.9 -2.0 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein compare
Xcc-8004.2954.1 -0.8 -6.1 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.4824.1 -0.8 -5.7 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3976.1 -0.8 -2.6 2-methylaconitate cis-trans isomerase compare
Xcc-8004.3674.1 -0.8 -2.1 FIG01209931: hypothetical protein compare
Xcc-8004.2260.1 -0.8 -2.9 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.3431.1 -0.8 -2.1 DNA repair protein RecN compare
Xcc-8004.3652.1 -0.8 -2.1 FIG01211136: hypothetical protein compare
Xcc-8004.4473.1 -0.8 -6.8 FIG01212400: hypothetical protein compare
Xcc-8004.171.1 -0.8 -1.2 hypothetical protein compare
Xcc-8004.645.1 -0.8 -1.3 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.1334.1 -0.8 -1.3 hypothetical protein compare
Xcc-8004.5368.1 -0.8 -2.6 FIG01210868: hypothetical protein compare
Xcc-8004.1022.1 -0.8 -4.0 hypothetical protein compare
Xcc-8004.1057.1 -0.8 -4.2 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.1244.1 -0.8 -4.6 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.4329.1 -0.8 -0.8 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.1222.1 -0.8 -1.9 Glyoxalase family protein compare
Xcc-8004.2384.1 -0.8 -5.4 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.1028.1 -0.8 -3.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.3955.1 -0.8 -3.2 HflK protein compare
Xcc-8004.3361.1 -0.8 -2.4 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Xcc-8004.2931.1 -0.8 -2.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.1132.1 -0.8 -1.2 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.2175.1 -0.8 -2.0 1-phosphofructokinase (EC 2.7.1.56) compare
Xcc-8004.3978.1 -0.8 -1.9 FIG01211989: hypothetical protein compare
Xcc-8004.2946.1 -0.8 -2.9 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.3862.1 -0.8 -3.3 Septum site-determining protein MinC compare
Xcc-8004.876.1 -0.8 -1.4 Mobile element protein compare
Xcc-8004.5051.1 -0.8 -1.4 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Xcc-8004.4046.1 -0.8 -5.0 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1536.1 -0.8 -2.3 Virulence protein compare
Xcc-8004.3498.1 -0.8 -1.1 hypothetical protein compare
Xcc-8004.2386.1 -0.8 -5.5 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.3595.1 -0.8 -1.0 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.3980.1 -0.8 -3.0 2-methylcitrate synthase (EC 2.3.3.5) compare
Xcc-8004.2561.1 -0.8 -4.3 FIG01213638: hypothetical protein compare
Xcc-8004.2421.1 -0.8 -5.8 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.2519.1 -0.8 -2.6 FIG01211007: hypothetical protein compare
Xcc-8004.4290.1 -0.8 -2.1 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Xcc-8004.2322.1 -0.7 -2.6 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.4508.1 -0.7 -3.1 Kinase compare
Xcc-8004.4693.1 -0.7 -1.7 hypothetical protein compare
Xcc-8004.1839.1 -0.7 -0.9 FIG01210863: hypothetical protein compare
Xcc-8004.3363.1 -0.7 -3.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Xcc-8004.3821.1 -0.7 -2.0 Lipoprotein signal peptidase (EC 3.4.23.36) compare
Xcc-8004.127.1 -0.7 -1.4 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4264.1 -0.7 -1.5 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.1023.1 -0.7 -3.0 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.2909.1 -0.7 -3.0 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) compare
Xcc-8004.1491.1 -0.7 -5.3 Glycosyltransferase compare
Xcc-8004.3054.1 -0.7 -1.1 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.2339.1 -0.7 -1.1 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.2505.1 -0.7 -5.5 FIG01212099: hypothetical protein compare
Xcc-8004.3863.1 -0.7 -2.7 Septum site-determining protein MinD compare
Xcc-8004.1680.1 -0.7 -4.0 FIG006611: nucleotidyltransferase compare
Xcc-8004.3723.1 -0.7 -1.7 hypothetical protein compare
Xcc-8004.956.1 -0.7 -3.8 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) compare
Xcc-8004.270.1 -0.7 -3.2 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3816.1 -0.7 -3.6 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.3303.1 -0.7 -2.0 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Xcc-8004.399.1 -0.7 -1.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.337.1 -0.7 -1.9 ATPase, AFG1 family compare
Xcc-8004.5073.1 -0.7 -2.6 FIG01210860: hypothetical protein compare
Xcc-8004.2930.1 -0.7 -1.1 hypothetical protein compare
Xcc-8004.968.1 -0.7 -4.7 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.4199.1 -0.7 -4.2 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Xcc-8004.4976.1 -0.7 -5.1 hypothetical protein compare
Xcc-8004.2869.1 -0.7 -2.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1693.1 -0.7 -3.0 Iron-uptake factor PiuC compare
Xcc-8004.2408.1 -0.7 -2.1 Mn-dependent transcriptional regulator MntR compare
Xcc-8004.2055.1 -0.7 -1.3 Mobile element protein compare
Xcc-8004.2920.1 -0.7 -3.6 Ferrous iron transport protein B compare
Xcc-8004.4071.1 -0.7 -2.3 hypothetical protein compare
Xcc-8004.3310.1 -0.7 -2.7 Chromosome partition protein smc compare
Xcc-8004.2081.1 -0.7 -1.9 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.5082.1 -0.7 -2.5 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Xcc-8004.3041.1 -0.7 -2.0 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.2079.1 -0.6 -1.3 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.1056.1 -0.6 -1.7 2-isopropylmalate synthase (EC 2.3.3.13) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in in planta mesophyll experiments

For in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days across organisms