Experiment set8IT013 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 10mM Glycine

200 most important genes:

  gene name fitness t score description  
MMP_RS06355 -5.4 -4.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01500 -5.0 -3.7 CBS domain-containing protein compare
MMP_RS05425 -4.5 -6.5 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05500 -4.0 -10.1 2-isopropylmalate synthase compare
MMP_RS06720 -3.9 -8.0 response regulator transcription factor compare
MMP_RS05515 -3.8 -9.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06680 -3.8 -18.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS03015 -3.8 -12.9 GTP 3' 8-cyclase MoaA compare
MMP_RS06350 -3.7 -6.5 HesA/MoeB/ThiF family protein compare
MMP_RS03640 -3.7 -4.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06685 -3.6 -16.8 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06715 -3.5 -19.0 cache domain-containing protein compare
MMP_RS06705 -3.5 -9.9 formate/nitrite transporter family protein compare
MMP_RS01175 -3.5 -5.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07635 -3.4 -8.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06700 -3.4 -17.8 hypothetical protein compare
MMP_RS05875 -3.4 -7.9 hydroxyethylthiazole kinase compare
MMP_RS03435 -3.2 -2.2 ketol-acid reductoisomerase compare
MMP_RS01545 -3.2 -1.6 CBS domain-containing protein compare
MMP_RS04605 -3.1 -5.1 cobalt ECF transporter T component CbiQ compare
MMP_RS06345 -3.1 -11.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS09055 -3.0 -1.6 CAP domain-containing protein compare
MMP_RS08300 -2.9 -1.8 metal-sulfur cluster assembly factor compare
MMP_RS05550 -2.9 -0.8 cation:proton antiporter compare
MMP_RS03600 -2.9 -3.0 triose-phosphate isomerase compare
MMP_RS04615 -2.9 -4.3 PDGLE domain-containing protein compare
MMP_RS05095 -2.9 -7.4 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS08165 -2.9 -4.0 phosphoglycerate dehydrogenase compare
MMP_RS07730 -2.8 -2.4 pyruvate synthase subunit beta compare
MMP_RS07845 -2.8 -2.8 LL-diaminopimelate aminotransferase compare
MMP_RS04900 -2.8 -19.9 hypothetical protein compare
MMP_RS07185 -2.7 -15.9 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04620 -2.7 -13.0 cobalt transporter CbiM compare
MMP_RS05060 -2.7 -10.3 AAA family ATPase compare
MMP_RS07365 -2.7 -14.7 2-phosphoglycerate kinase compare
MMP_RS08745 -2.6 -8.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07735 -2.6 -0.9 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06840 -2.6 -1.3 DNA-directed RNA polymerase subunit N compare
MMP_RS05090 -2.6 -9.3 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS01195 -2.5 -1.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01455 -2.5 -10.6 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS05100 -2.5 -17.7 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS05075 -2.5 -15.9 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS07555 -2.5 -1.1 monovalent cation/H+ antiporter subunit E compare
MMP_RS07445 -2.4 -7.1 helix-turn-helix domain-containing protein compare
MMP_RS01020 -2.4 -1.5 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS04215 -2.3 -8.6 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06105 -2.3 -8.6 hydrogenase maturation peptidase HycI compare
MMP_RS06975 -2.3 -2.9 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS03035 -2.3 -3.8 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS03315 -2.3 -1.5 ferrous iron transport protein A compare
MMP_RS06175 -2.3 -7.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS05055 -2.3 -14.0 DUF166 domain-containing protein compare
MMP_RS06925 -2.2 -3.6 ribonuclease VapC4 compare
MMP_RS05080 -2.2 -11.5 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS05085 -2.2 -9.9 AAA family ATPase compare
MMP_RS02355 -2.2 -3.8 30S ribosomal protein S27ae compare
MMP_RS06375 -2.1 -8.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS08330 -2.1 -4.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS01005 -2.1 -1.9 riboflavin synthase compare
MMP_RS02340 -2.1 -2.3 DNA-directed RNA polymerase subunit E'' compare
MMP_RS02195 -2.1 -4.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06400 -2.1 -2.1 4Fe-4S binding protein compare
MMP_RS07545 -2.1 -1.6 HTH domain-containing protein compare
MMP_RS07005 -2.1 -0.7 4Fe-4S binding protein compare
MMP_RS02010 -2.1 -8.1 PHP domain-containing protein compare
MMP_RS09020 -2.1 -2.1 hypothetical protein compare
MMP_RS05070 -2.1 -9.4 4Fe-4S dicluster domain-containing protein compare
MMP_RS07525 -2.1 -9.5 4Fe-4S binding protein compare
MMP_RS06295 -2.0 -7.8 methanogenesis marker 14 protein compare
MMP_RS03960 -2.0 -1.4 hypothetical protein compare
MMP_RS00295 -2.0 -2.7 gamma carbonic anhydrase family protein compare
MMP_RS00305 -2.0 -2.5 phosphoribosyl-ATP diphosphatase compare
MMP_RS00040 -2.0 -5.8 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS01985 -1.9 -5.5 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS05265 -1.9 -2.7 2-isopropylmalate synthase compare
MMP_RS02280 -1.9 -1.1 DUF211 domain-containing protein compare
MMP_RS08940 -1.9 -1.3 MetS family NSS transporter small subunit compare
MMP_RS07575 -1.9 -4.9 RNA ligase partner protein compare
MMP_RS05555 -1.9 -1.3 DUF4040 domain-containing protein compare
MMP_RS00685 -1.9 -4.5 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00300 -1.9 -0.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01085 -1.9 -2.2 hypothetical protein compare
MMP_RS04870 -1.9 -5.3 TIGR02253 family HAD-type hydrolase compare
MMP_RS08820 -1.8 -5.7 hypothetical protein compare
MMP_RS05765 -1.8 -7.8 M42 family metallopeptidase compare
MMP_RS08715 -1.8 -2.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08320 -1.8 -6.5 molybdopterin molybdotransferase MoeA compare
MMP_RS01325 -1.8 -2.4 dihydroneopterin aldolase family protein compare
MMP_RS01220 -1.8 -7.6 hypothetical protein compare
MMP_RS07720 -1.8 -8.5 4Fe-4S binding protein compare
MMP_RS05850 -1.8 -5.1 Ldh family oxidoreductase compare
MMP_RS02800 -1.8 -4.1 nucleotidyltransferase domain-containing protein compare
MMP_RS08460 -1.8 -2.9 proteasome-activating nucleotidase compare
MMP_RS01980 -1.7 -11.5 trimeric intracellular cation channel family protein compare
MMP_RS05930 -1.7 -2.5 3-isopropylmalate dehydratase large subunit compare
MMP_RS03025 -1.7 -5.1 molybdenum cofactor guanylyltransferase compare
MMP_RS03475 -1.7 -0.9 hypothetical protein compare
MMP_RS06270 -1.7 -5.5 TIGR00300 family protein compare
MMP_RS04875 -1.7 -4.3 energy-converting hydrogenase B subunit P compare
MMP_RS02885 -1.7 -11.3 molybdopterin biosynthesis protein compare
MMP_RS01365 -1.7 -2.9 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS04125 -1.6 -3.1 TetR/AcrR family transcriptional regulator compare
MMP_RS05065 -1.6 -3.8 CooT family nickel-binding protein compare
MMP_RS08635 -1.6 -1.8 UbiA family prenyltransferase compare
MMP_RS02345 -1.6 -4.0 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS08790 -1.5 -2.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS08720 -1.5 -1.4 4Fe-4S binding protein compare
MMP_RS00695 -1.5 -1.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06285 -1.5 -2.8 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01700 -1.5 -0.7 dihydroxy-acid dehydratase compare
MMP_RS06630 -1.5 -1.0 UPF0058 family protein compare
MMP_RS01830 -1.5 -1.7 tRNA-Val compare
MMP_RS01610 -1.5 -3.4 hypothetical protein compare
MMP_RS01385 -1.5 -0.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06200 -1.4 -5.6 M24 family metallopeptidase compare
MMP_RS07630 -1.4 -1.6 ATP-binding cassette domain-containing protein compare
MMP_RS06340 -1.4 -5.8 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05865 -1.4 -1.3 hypothetical protein compare
MMP_RS06730 -1.4 -1.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS04090 -1.4 -2.8 hypothetical protein compare
MMP_RS01265 -1.4 -2.0 hypothetical protein compare
MMP_RS00290 -1.3 -5.1 hypothetical protein compare
MMP_RS05540 -1.3 -2.1 hypothetical protein compare
MMP_RS07960 -1.3 -6.0 sugar phosphate isomerase/epimerase compare
MMP_RS04585 -1.3 -7.7 AIR synthase related protein compare
MMP_RS08350 -1.3 -0.9 hypothetical protein compare
MMP_RS06895 -1.3 -1.4 selenocysteine-specific translation elongation factor compare
MMP_RS00455 -1.2 -4.8 orotate phosphoribosyltransferase-like protein compare
MMP_RS08725 -1.2 -1.7 Ni/Fe hydrogenase subunit alpha compare
MMP_RS03145 -1.2 -5.3 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS00555 -1.2 -3.5 MFS transporter compare
MMP_RS00620 -1.2 -3.8 4Fe-4S binding protein compare
MMP_RS07725 -1.2 -2.5 4Fe-4S dicluster domain-containing protein compare
MMP_RS02175 -1.2 -0.8 DUF1611 domain-containing protein compare
MMP_RS07580 -1.2 -2.7 DUF356 domain-containing protein compare
MMP_RS08435 -1.1 -1.9 Era-like GTP-binding protein compare
MMP_RS01380 -1.1 -3.3 PHP domain-containing protein compare
MMP_RS07710 -1.1 -4.1 cell division protein FtsZ compare
MMP_RS01075 -1.1 -0.8 hypothetical protein compare
MMP_RS04255 -1.1 -3.5 coenzyme F420 hydrogenase subunit beta compare
MMP_RS06885 -1.1 -2.1 50S ribosome-binding GTPase compare
MMP_RS06120 -1.1 -1.4 UPF0147 family protein compare
MMP_RS01445 -1.1 -4.7 hypothetical protein compare
MMP_RS07535 -1.1 -5.6 4Fe-4S binding protein compare
MMP_RS04775 -1.1 -2.0 adenosylhomocysteinase compare
MMP_RS08615 -1.1 -1.0 flagellar protein G compare
MMP_RS03445 -1.1 -0.9 methanogenesis marker 17 protein compare
MMP_RS04790 -1.1 -5.8 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS01790 -1.1 -2.0 restriction endonuclease compare
MMP_RS03485 -1.1 -2.7 TIGR00267 family protein compare
MMP_RS04890 -1.0 -0.5 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS00535 -1.0 -1.3 TIGR00375 family protein compare
MMP_RS03550 -1.0 -1.3 DUF2124 domain-containing protein compare
MMP_RS02930 -1.0 -2.1 class I SAM-dependent methyltransferase compare
MMP_RS04780 -1.0 -2.0 ribonuclease P compare
MMP_RS06710 -1.0 -3.2 selenium-binding protein compare
MMP_RS05925 -1.0 -2.5 small nuclear ribonucleoprotein compare
MMP_RS02875 -1.0 -4.3 chorismate pyruvate-lyase family protein compare
MMP_RS01440 -1.0 -2.3 NAAT family transporter compare
MMP_RS07415 -1.0 -2.9 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS01800 -1.0 -2.1 TIGR00303 family protein compare
MMP_RS01745 -1.0 -2.4 AMP phosphorylase compare
MMP_RS07600 -1.0 -2.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08415 -1.0 -2.5 radical SAM protein compare
MMP_RS02900 -1.0 -0.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08645 -1.0 -4.5 UPF0179 family protein compare
MMP_RS06020 -1.0 -2.6 archaeoflavoprotein AfpA compare
MMP_RS01330 -1.0 -5.1 DHH family phosphoesterase compare
MMP_RS01795 -0.9 -1.0 methanogenesis marker 6 protein compare
MMP_RS00115 -0.9 -5.3 radical SAM protein compare
MMP_RS00345 -0.9 -2.7 DUF2666 domain-containing protein compare
MMP_RS06625 -0.9 -1.5 DNA primase compare
MMP_RS02235 -0.9 -3.2 CBS domain-containing protein compare
MMP_RS05950 -0.9 -3.2 nickel-dependent hydrogenase large subunit compare
MMP_RS02170 -0.9 -2.5 CBS domain-containing protein compare
MMP_RS02610 -0.9 -3.2 DUF2162 domain-containing protein compare
MMP_RS08210 -0.9 -1.3 phosphatidylglycerophosphatase A compare
MMP_RS01250 -0.9 -2.5 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS04410 -0.9 -1.4 hypothetical protein compare
MMP_RS05985 -0.9 -1.0 hypothetical protein compare
MMP_RS05845 -0.9 -1.1 tRNA-intron lyase compare
MMP_RS02165 -0.9 -3.3 tRNA-dihydrouridine synthase compare
MMP_RS06865 -0.9 -1.2 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS03140 -0.9 -5.2 hypothetical protein compare
MMP_RS00570 -0.8 -0.8 protein-L-isoaspartate O-methyltransferase compare
MMP_RS05505 -0.8 -4.7 class IV adenylate cyclase compare
MMP_RS05910 -0.8 -1.4 cell division ATPase MinD compare
MMP_RS03080 -0.8 -1.5 universal stress protein compare
MMP_RS01255 -0.8 -1.3 amino acid ABC transporter ATP-binding protein compare
MMP_RS04710 -0.8 -1.1 hypothetical protein compare
MMP_RS06760 -0.8 -0.9 hypothetical protein compare
MMP_RS02805 -0.8 -1.0 HEPN domain-containing protein compare
MMP_RS01755 -0.8 -1.0 DUF2097 domain-containing protein compare
MMP_RS08750 -0.8 -1.5 hypothetical protein compare
MMP_RS01720 -0.8 -1.2 replication factor C large subunit compare
MMP_RS06990 -0.8 -2.1 CatB-related O-acetyltransferase compare
MMP_RS02530 -0.7 -2.0 type II toxin-antitoxin system mRNA interferase toxin RelE/StbE family compare
MMP_RS03685 -0.7 -3.4 Mrp/NBP35 family ATP-binding protein compare
MMP_RS05440 -0.7 -3.6 winged helix-turn-helix transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Glycine across organisms