Experiment set8IT012 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 10mM L-Ornithine

200 most important genes:

  gene name fitness t score description  
MMP_RS06355 -4.8 -3.2 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07345 -4.1 -9.1 glycine synthesis protein GlyXL (from data) compare
MMP_RS09055 -4.0 -1.3 CAP domain-containing protein compare
MMP_RS01175 -3.9 -7.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03015 -3.8 -10.6 GTP 3' 8-cyclase MoaA compare
MMP_RS02280 -3.7 -1.1 DUF211 domain-containing protein compare
MMP_RS06680 -3.7 -15.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05515 -3.6 -9.6 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS08165 -3.6 -2.6 phosphoglycerate dehydrogenase compare
MMP_RS05500 -3.5 -12.6 2-isopropylmalate synthase compare
MMP_RS06345 -3.5 -16.5 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06350 -3.5 -8.4 HesA/MoeB/ThiF family protein compare
MMP_RS07635 -3.5 -10.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03640 -3.4 -4.6 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06720 -3.4 -8.8 response regulator transcription factor compare
MMP_RS06715 -3.3 -18.8 cache domain-containing protein compare
MMP_RS01085 -3.3 -2.2 hypothetical protein compare
MMP_RS08720 -3.3 -2.3 4Fe-4S binding protein compare
MMP_RS06700 -3.3 -15.6 hypothetical protein compare
MMP_RS06685 -3.2 -16.4 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS08940 -3.1 -1.3 MetS family NSS transporter small subunit compare
MMP_RS02010 -3.1 -11.6 PHP domain-containing protein compare
MMP_RS01195 -3.0 -1.6 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS08745 -3.0 -11.0 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07730 -3.0 -2.3 pyruvate synthase subunit beta compare
MMP_RS00040 -3.0 -6.2 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS06705 -3.0 -6.9 formate/nitrite transporter family protein compare
MMP_RS01500 -3.0 -3.1 CBS domain-containing protein compare
MMP_RS07185 -2.9 -15.7 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06175 -2.9 -7.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS05425 -2.9 -5.3 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS03435 -2.8 -2.2 ketol-acid reductoisomerase compare
MMP_RS04900 -2.8 -18.8 hypothetical protein compare
MMP_RS04615 -2.8 -4.0 PDGLE domain-containing protein compare
MMP_RS02340 -2.8 -2.1 DNA-directed RNA polymerase subunit E'' compare
MMP_RS04605 -2.8 -6.4 cobalt ECF transporter T component CbiQ compare
MMP_RS03035 -2.8 -4.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS03315 -2.8 -1.5 ferrous iron transport protein A compare
MMP_RS05875 -2.8 -6.7 hydroxyethylthiazole kinase compare
MMP_RS05095 -2.8 -6.8 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS07365 -2.7 -16.6 2-phosphoglycerate kinase compare
MMP_RS07445 -2.7 -9.0 helix-turn-helix domain-containing protein compare
MMP_RS07555 -2.7 -1.0 monovalent cation/H+ antiporter subunit E compare
MMP_RS00295 -2.7 -2.5 gamma carbonic anhydrase family protein compare
MMP_RS05555 -2.6 -1.3 DUF4040 domain-containing protein compare
MMP_RS07525 -2.6 -10.4 4Fe-4S binding protein compare
MMP_RS01545 -2.6 -1.3 CBS domain-containing protein compare
MMP_RS07735 -2.6 -0.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04620 -2.6 -14.2 cobalt transporter CbiM compare
MMP_RS03450 -2.5 -2.7 glycine synthesis protein GlyXS (from data) compare
MMP_RS01020 -2.5 -1.3 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06975 -2.5 -2.7 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS07630 -2.5 -1.8 ATP-binding cassette domain-containing protein compare
MMP_RS02800 -2.4 -4.4 nucleotidyltransferase domain-containing protein compare
MMP_RS05765 -2.4 -8.2 M42 family metallopeptidase compare
MMP_RS05085 -2.4 -10.3 AAA family ATPase compare
MMP_RS05060 -2.4 -10.4 AAA family ATPase compare
MMP_RS05100 -2.3 -16.5 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS07845 -2.3 -2.9 LL-diaminopimelate aminotransferase compare
MMP_RS04870 -2.3 -5.7 TIGR02253 family HAD-type hydrolase compare
MMP_RS05075 -2.3 -16.1 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS02355 -2.3 -2.6 30S ribosomal protein S27ae compare
MMP_RS04780 -2.3 -3.6 ribonuclease P compare
MMP_RS01005 -2.3 -1.5 riboflavin synthase compare
MMP_RS05055 -2.3 -15.6 DUF166 domain-containing protein compare
MMP_RS05550 -2.2 -0.6 cation:proton antiporter compare
MMP_RS06625 -2.2 -2.1 DNA primase compare
MMP_RS06105 -2.2 -6.4 hydrogenase maturation peptidase HycI compare
MMP_RS01830 -2.2 -1.9 tRNA-Val compare
MMP_RS03600 -2.2 -2.4 triose-phosphate isomerase compare
MMP_RS05090 -2.2 -11.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05080 -2.2 -11.1 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS08715 -2.1 -1.9 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01985 -2.1 -5.4 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS08330 -2.1 -5.8 NADH-quinone oxidoreductase subunit H compare
MMP_RS07380 -2.1 -2.4 transcription elongation factor Spt5 compare
MMP_RS05930 -2.1 -2.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS05065 -2.1 -5.7 CooT family nickel-binding protein compare
MMP_RS05070 -2.1 -7.9 4Fe-4S dicluster domain-containing protein compare
MMP_RS01220 -2.0 -8.5 hypothetical protein compare
MMP_RS07575 -2.0 -3.9 RNA ligase partner protein compare
MMP_RS08635 -2.0 -2.0 UbiA family prenyltransferase compare
MMP_RS05850 -2.0 -4.8 Ldh family oxidoreductase compare
MMP_RS08820 -2.0 -5.0 hypothetical protein compare
MMP_RS03475 -2.0 -0.8 hypothetical protein compare
MMP_RS01380 -1.9 -4.0 PHP domain-containing protein compare
MMP_RS04875 -1.9 -5.5 energy-converting hydrogenase B subunit P compare
MMP_RS00290 -1.9 -6.0 hypothetical protein compare
MMP_RS01610 -1.9 -3.4 hypothetical protein compare
MMP_RS06840 -1.9 -1.0 DNA-directed RNA polymerase subunit N compare
MMP_RS06730 -1.9 -1.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS04125 -1.9 -2.8 TetR/AcrR family transcriptional regulator compare
MMP_RS08460 -1.8 -2.7 proteasome-activating nucleotidase compare
MMP_RS01365 -1.8 -3.3 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06295 -1.8 -5.2 methanogenesis marker 14 protein compare
MMP_RS07720 -1.8 -10.2 4Fe-4S binding protein compare
MMP_RS05265 -1.8 -1.9 2-isopropylmalate synthase compare
MMP_RS01700 -1.7 -0.8 dihydroxy-acid dehydratase compare
MMP_RS09020 -1.7 -1.4 hypothetical protein compare
MMP_RS01795 -1.7 -1.5 methanogenesis marker 6 protein compare
MMP_RS08615 -1.7 -1.6 flagellar protein G compare
MMP_RS06270 -1.7 -6.3 TIGR00300 family protein compare
MMP_RS00620 -1.7 -6.5 4Fe-4S binding protein compare
MMP_RS05540 -1.7 -2.2 hypothetical protein compare
MMP_RS01385 -1.7 -0.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS03550 -1.7 -1.5 DUF2124 domain-containing protein compare
MMP_RS03025 -1.7 -5.0 molybdenum cofactor guanylyltransferase compare
MMP_RS02195 -1.6 -3.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01755 -1.6 -1.3 DUF2097 domain-containing protein compare
MMP_RS01325 -1.6 -1.9 dihydroneopterin aldolase family protein compare
MMP_RS07545 -1.6 -1.3 HTH domain-containing protein compare
MMP_RS04585 -1.6 -7.9 AIR synthase related protein compare
MMP_RS06925 -1.6 -2.2 ribonuclease VapC4 compare
MMP_RS03205 -1.5 -1.4 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08210 -1.5 -1.9 phosphatidylglycerophosphatase A compare
MMP_RS06200 -1.5 -5.9 M24 family metallopeptidase compare
MMP_RS00685 -1.5 -3.2 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00300 -1.5 -0.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06285 -1.4 -2.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06340 -1.4 -6.2 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00115 -1.4 -7.8 radical SAM protein compare
MMP_RS02235 -1.4 -5.3 CBS domain-containing protein compare
MMP_RS02170 -1.4 -4.8 CBS domain-containing protein compare
MMP_RS08645 -1.4 -6.3 UPF0179 family protein compare
MMP_RS03445 -1.4 -0.9 methanogenesis marker 17 protein compare
MMP_RS08790 -1.4 -2.1 translation initiation factor IF-2 subunit alpha compare
MMP_RS06400 -1.4 -1.2 4Fe-4S binding protein compare
MMP_RS00985 -1.4 -4.4 CDC48 family AAA ATPase compare
MMP_RS04775 -1.4 -2.9 adenosylhomocysteinase compare
MMP_RS03145 -1.3 -4.9 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS00305 -1.3 -1.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS07710 -1.3 -4.7 cell division protein FtsZ compare
MMP_RS01800 -1.3 -2.9 TIGR00303 family protein compare
MMP_RS00535 -1.3 -1.5 TIGR00375 family protein compare
MMP_RS05505 -1.3 -5.5 class IV adenylate cyclase compare
MMP_RS03140 -1.3 -7.8 hypothetical protein compare
MMP_RS05865 -1.3 -1.1 hypothetical protein compare
MMP_RS05245 -1.3 -5.9 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS02930 -1.3 -2.0 class I SAM-dependent methyltransferase compare
MMP_RS07580 -1.3 -2.2 DUF356 domain-containing protein compare
MMP_RS05430 -1.2 -4.2 TIGR00288 family NYN domain-containing protein compare
MMP_RS01265 -1.2 -1.9 hypothetical protein compare
MMP_RS02240 -1.2 -2.7 methanogenesis marker 7 protein compare
MMP_RS07535 -1.2 -5.3 4Fe-4S binding protein compare
MMP_RS04890 -1.2 -0.6 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08320 -1.2 -4.7 molybdopterin molybdotransferase MoeA compare
MMP_RS04790 -1.2 -6.9 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS03080 -1.2 -1.9 universal stress protein compare
MMP_RS06865 -1.2 -1.4 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06885 -1.2 -2.4 50S ribosome-binding GTPase compare
MMP_RS01790 -1.2 -2.1 restriction endonuclease compare
MMP_RS02165 -1.2 -3.7 tRNA-dihydrouridine synthase compare
MMP_RS07705 -1.2 -4.3 transcriptional regulator compare
MMP_RS01440 -1.2 -2.5 NAAT family transporter compare
MMP_RS01255 -1.1 -1.5 amino acid ABC transporter ATP-binding protein compare
MMP_RS07960 -1.1 -4.4 sugar phosphate isomerase/epimerase compare
MMP_RS02345 -1.1 -2.2 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS00965 -1.1 -1.1 hypothetical protein compare
MMP_RS07600 -1.1 -2.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08725 -1.1 -1.6 Ni/Fe hydrogenase subunit alpha compare
MMP_RS05845 -1.1 -1.4 tRNA-intron lyase compare
MMP_RS01445 -1.1 -3.3 hypothetical protein compare
MMP_RS00050 -1.1 -4.7 AarF/UbiB family protein compare
MMP_RS01075 -1.1 -1.0 hypothetical protein compare
MMP_RS03960 -1.1 -0.9 hypothetical protein compare
MMP_RS00110 -1.1 -2.4 hypothetical protein compare
MMP_RS01110 -1.1 -2.0 FmdE family protein compare
MMP_RS05815 -1.1 -1.7 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS02045 -1.1 -1.3 tRNA-Met compare
MMP_RS04410 -1.0 -1.2 hypothetical protein compare
MMP_RS04255 -1.0 -2.8 coenzyme F420 hydrogenase subunit beta compare
MMP_RS00345 -1.0 -3.0 DUF2666 domain-containing protein compare
MMP_RS05920 -1.0 -0.4 50S ribosomal protein L37e compare
MMP_RS00695 -1.0 -0.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS02545 -1.0 -1.6 hypothetical protein compare
MMP_RS08435 -1.0 -1.5 Era-like GTP-binding protein compare
MMP_RS03305 -1.0 -3.2 winged helix-turn-helix domain-containing protein compare
MMP_RS02885 -1.0 -5.9 molybdopterin biosynthesis protein compare
MMP_RS00455 -0.9 -3.3 orotate phosphoribosyltransferase-like protein compare
MMP_RS07200 -0.9 -3.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00895 -0.9 -1.8 hypothetical protein compare
MMP_RS08300 -0.9 -0.8 metal-sulfur cluster assembly factor compare
MMP_RS08240 -0.9 -3.9 methanogenesis marker 16 metalloprotein compare
MMP_RS07860 -0.9 -0.7 hypothetical protein compare
MMP_RS01250 -0.9 -3.1 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS06020 -0.9 -2.4 archaeoflavoprotein AfpA compare
MMP_RS01570 -0.9 -1.0 hypothetical protein compare
MMP_RS06325 -0.9 -0.9 hypothetical protein compare
MMP_RS02135 -0.9 -2.1 DUF5612 domain-containing protein compare
MMP_RS08350 -0.9 -0.6 hypothetical protein compare
MMP_RS07685 -0.9 -3.3 TIGR01212 family radical SAM protein compare
MMP_RS06215 -0.9 -1.9 30S ribosomal protein S6e compare
MMP_RS05910 -0.9 -1.3 cell division ATPase MinD compare
MMP_RS00705 -0.9 -1.5 hypothetical protein compare
MMP_RS01720 -0.9 -1.4 replication factor C large subunit compare
MMP_RS04990 -0.9 -2.7 aquaporin family protein compare
MMP_RS02610 -0.9 -1.8 DUF2162 domain-containing protein compare
MMP_RS08690 -0.8 -2.7 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare
MMP_RS06140 -0.8 -1.6 radical SAM protein compare
MMP_RS06630 -0.8 -0.5 UPF0058 family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 L-Ornithine across organisms