Experiment set8IT012 for Caulobacter crescentus NA1000

Compare to:

PYE with CHIR-090 2 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03878 +1.3 2.4 ferrochelatase compare
CCNA_02646 +1.3 3.0 cell division protein MraZ compare
CCNA_01176 +1.2 3.2 hypothetical protein compare
CCNA_02591 +0.8 3.6 glutaredoxin compare
CCNA_03918 +0.8 1.6 hypothetical protein compare
CCNA_02026 +0.8 4.7 hypothetical protein compare
CCNA_03078 +0.8 1.2 Arc/MetJ-family transcriptional regulator compare
CCNA_01505 +0.8 2.6 hypothetical protein compare
CCNA_02030 +0.7 1.5 hypothetical protein compare
CCNA_02892 +0.7 1.4 hypothetical protein compare
CCNA_01840 +0.7 5.9 MerR-family transcriptional regulator compare
CCNA_03951 +0.7 4.1 hypothetical protein compare
CCNA_01942 +0.7 3.9 Rrf2 family protein compare
CCNA_01094 +0.7 3.0 hypothetical protein compare
CCNA_00521 +0.7 1.4 antitoxin protein compare
CCNA_02732 +0.7 3.5 hypothetical protein compare
CCNA_02004 +0.7 1.8 SOS-induced inhibitor of cell division SidA compare
CCNA_01186 +0.7 2.9 hypothetical protein compare
CCNA_03964 +0.7 2.1 hypothetical protein compare
CCNA_02273 +0.7 3.9 glutathione peroxidase compare
CCNA_00699 +0.6 2.9 LSU ribosomal protein L28P compare
CCNA_02025 +0.6 3.5 hypothetical protein compare
CCNA_01338 +0.6 4.0 glyoxalase family protein compare
CCNA_02000 +0.6 0.9 SSU ribosomal protein S2P compare
CCNA_01968 +0.6 2.0 pentapeptide repeats containing protein compare
CCNA_00931 +0.6 4.5 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_02242 +0.6 3.1 PHB granule-associated protein, phasin2 compare
CCNA_03961 +0.6 2.3 hypothetical protein compare
CCNA_02957 +0.6 3.2 ArsR-family transcriptional regulator compare
CCNA_01848 +0.6 3.9 quinol cytochrome oxidase polypeptide IV compare
CCNA_01804 +0.6 4.3 glutathione peroxidase compare
CCNA_02878 +0.6 1.0 hypothetical protein compare
CCNA_03196 +0.6 2.1 hypothetical protein compare
CCNA_R0047 +0.6 1.6 tRNA-Val compare
CCNA_00930 +0.6 4.7 riboflavin synthase alpha chain compare
CCNA_01629 +0.6 3.2 signal peptidase I compare
CCNA_02551 +0.6 3.5 hypothetical protein compare
CCNA_01168 +0.6 1.4 3-ketoacyl-CoA thiolase compare
CCNA_02534 +0.6 1.2 hypothetical protein compare
CCNA_01541 +0.6 4.2 LysR-family transcriptional regulator compare
CCNA_01178 +0.6 1.9 conserved hypothetical protein, DUF934 compare
CCNA_01339 +0.6 3.7 ArsR-family transcriptional regulator compare
CCNA_02040 +0.6 1.4 phosphoserine phosphatase compare
CCNA_03913 +0.6 0.8 hypothetical protein compare
CCNA_02063 +0.6 3.2 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_02760 +0.6 2.5 hypothetical protein compare
CCNA_01333 +0.5 3.1 hypothetical protein compare
CCNA_01655 +0.5 3.6 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_01573 +0.5 3.0 ArsR-family transcriptional regulator compare
CCNA_02843 +0.5 2.1 toxin protein parE-3 compare
CCNA_00895 +0.5 2.4 hypothetical protein compare
CCNA_02341 +0.5 2.7 small heat shock protein compare
CCNA_01801 +0.5 1.9 hypothetical protein compare
CCNA_00153 +0.5 1.7 adenine nucleotide exchange factor GrpE compare
CCNA_01531 +0.5 3.6 acetyltransferase compare
CCNA_01679 +0.5 3.6 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01913 +0.5 4.0 MarR-family transcriptional regulator compare
CCNA_01371 +0.5 2.1 hypothetical protein compare
CCNA_00919 +0.5 1.7 hypothetical protein compare
CCNA_01850 +0.5 4.3 quinol cytochrome oxidase polypeptide I compare
CCNA_03952 +0.5 2.9 hypothetical protein compare
CCNA_01851 +0.5 4.2 quinol cytochrome oxidase polypeptide II compare
CCNA_02608 +0.5 3.3 hypothetical protein compare
CCNA_02225 +0.5 3.0 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_01173 +0.5 2.9 chorismate mutase compare
CCNA_01712 +0.5 3.7 CopY/TcrY family transcriptional repressor compare
CCNA_03252 +0.5 3.3 CopY/TcrY-family transcriptional regulator compare
CCNA_01526 +0.5 2.1 flagellar biosynthesis regulatory protein flaF compare
CCNA_02034 +0.5 3.1 luciferase-like monooxygenase compare
CCNA_01849 +0.5 2.8 quinol cytochrome oxidase polypeptide III compare
CCNA_01765 +0.5 2.1 peptidase inhibitor, I78 family compare
CCNA_03114 +0.5 1.7 hypothetical protein compare
CCNA_00517 +0.5 0.8 peptidyl-tRNA hydrolase compare
CCNA_02103 +0.5 3.4 hypothetical protein compare
CCNA_01361 +0.5 1.5 PepSY superfamily protein compare
CCNA_03070 +0.5 2.0 4-oxalocrotonate tautomerase compare
CCNA_03936 +0.5 2.7 hypothetical protein compare
CCNA_02703 +0.4 2.0 5-hydroxyisourate hydrolase compare
CCNA_00765 +0.4 2.5 hypothetical protein compare
CCNA_01528 +0.4 3.2 flagellin fljK compare
CCNA_03854 +0.4 1.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
CCNA_00929 +0.4 3.5 Riboflavin-specific deaminase family protein compare
CCNA_01276 +0.4 1.2 cytochrome c5 compare
CCNA_02067 +0.4 3.0 conserved membrane spanning protein compare
CCNA_02367 +0.4 3.5 CelR-family transcriptional regulator compare
CCNA_01949 +0.4 1.5 bactofilin A BacA compare
CCNA_01931 +0.4 2.7 TetR-family transcriptional regulator compare
CCNA_01252 +0.4 4.0 soluble lytic murein transglycosylase compare
CCNA_02309 +0.4 1.8 EF hand domain protein compare
CCNA_00523 +0.4 3.1 multicopper polyphenol oxidase compare
CCNA_01684 +0.4 2.5 phenylalanine-4-hydroxylase compare
CCNA_03129 +0.4 3.6 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01578 +0.4 2.6 beta-lactamase repressor compare
CCNA_01927 +0.4 2.2 enoyl-CoA hydratase compare
CCNA_03944 +0.4 0.6 hypothetical protein compare
CCNA_03965 +0.4 0.6 hypothetical protein compare
CCNA_01278 +0.4 2.4 hypothetical protein compare
CCNA_02983 +0.4 2.8 polyprenyl-phosphate beta-D-glucosyltransferase compare
CCNA_01780 +0.4 3.3 exopolyphosphatase compare
CCNA_02363 +0.4 3.0 hypothetical protein compare
CCNA_02559 +0.4 2.2 NTF2 superfamily protein compare
CCNA_01510 +0.4 1.4 hypothetical protein compare
CCNA_02984 +0.4 2.3 hypothetical protein compare
CCNA_03989 +0.4 3.2 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_02955 +0.4 3.0 putative anion permease compare
CCNA_02475 +0.4 3.0 transcriptional regulator vanR compare
CCNA_00468 +0.4 2.2 UDP glucuronic acid epimerase-related protein compare
CCNA_01752 +0.4 2.6 YicC-family protein compare
CCNA_02595 +0.4 2.2 Zn finger TFIIB-family transcription factor compare
CCNA_03863 +0.4 2.0 hypothetical protein compare
CCNA_02619 +0.4 3.6 stomatin/prohibitin-related protein compare
CCNA_01745 +0.4 2.2 thioredoxin peroxidase compare
CCNA_00312 +0.4 2.5 putative membrane spanning protein compare
CCNA_00147 +0.4 0.8 hypothetical protein compare
CCNA_02774 +0.4 2.0 hypothetical protein compare
CCNA_03116 +0.4 2.1 hypothetical protein compare
CCNA_00898 +0.4 2.6 ribosomal large subunit pseudouridine synthase F compare
CCNA_03123 +0.4 2.7 ArsR-family transcriptional regulator compare
CCNA_01459 +0.4 1.8 hypothetical protein compare
CCNA_00845 +0.4 2.7 antitoxin protein relB-1 compare
CCNA_01420 +0.4 1.6 NrdR family transcriptional regulator compare
CCNA_01582 +0.4 1.2 Glutathione-dependent formaldehyde-activating enzyme compare
CCNA_00932 +0.4 2.3 6,7-dimethyl-8-ribityllumazine synthase compare
CCNA_02987 +0.4 0.9 hypothetical protein compare
CCNA_01755 +0.4 2.8 two component sensor histidine kinase compare
CCNA_03892 +0.4 2.5 HD family metal-dependent phosphohydrolase compare
CCNA_00947 +0.4 3.1 flagellar hook protein FlgE compare
CCNA_00107 +0.4 1.4 Trm112p-like protein compare
CCNA_03213 +0.4 2.0 polyhydroxyalkanoic acid system protein compare
CCNA_03948 +0.4 0.7 hypothetical protein compare
CCNA_02379 +0.4 2.8 hypothetical protein compare
CCNA_02021 +0.4 1.5 hypothetical protein compare
CCNA_03107 +0.4 2.6 cytidine deaminase compare
CCNA_02817 +0.4 1.4 hypothetical protein compare
CCNA_01910 +0.4 0.7 ABC transporter substrate-binding protein compare
CCNA_01295 +0.4 2.6 integral membrane protein compare
CCNA_01827 +0.4 2.2 cobyric acid synthase CobQ compare
CCNA_02350 +0.4 1.9 dimeric ferredoxin-like protein compare
CCNA_03999 +0.4 2.3 cell surface polysaccharide synthesis protein, GtrA family compare
CCNA_03429 +0.4 1.6 haloacid dehalogenase superfamily, subfamily IA compare
CCNA_01235 +0.4 2.4 AcrR-family transcriptional regulator compare
CCNA_01773 +0.4 2.0 SNARE-associated family membrane protein compare
CCNA_02805 +0.4 1.8 hypothetical protein compare
CCNA_00097 +0.4 2.1 hypothetical protein compare
CCNA_01184 +0.4 2.4 MutT/nudix family hydrolase compare
CCNA_02617 +0.4 2.8 histidinol-phosphate aminotransferase compare
CCNA_02601 +0.4 3.0 glutathione-dependent formaldehyde dehydrogenase compare
CCNA_00834 +0.4 2.7 flagellin FljM compare
CCNA_00444 +0.4 2.5 chemotaxis protein methyltransferase compare
CCNA_01181 +0.4 2.3 hypothetical protein compare
CCNA_00269 +0.4 2.6 YbaB/EbfC-family DNA-binding protein compare
CCNA_R0054 +0.4 0.9 tRNA-Gly compare
CCNA_01979 +0.4 2.1 LexA repressor compare
CCNA_01088 +0.4 2.1 hypothetical protein compare
CCNA_01075 +0.3 1.6 beta/gamma crystallin family protein compare
CCNA_01681 +0.3 1.7 RimI-like acetyltransferase compare
CCNA_01258 +0.3 2.1 hypothetical protein compare
CCNA_01529 +0.3 1.5 FlaG superfamily protein compare
CCNA_03874 +0.3 2.4 carboxymethylenebutenolidase compare
CCNA_02947 +0.3 2.6 spsG-related polysaccharide biosynthesis protein compare
CCNA_01778 +0.3 2.5 penicillin-binding protein compare
CCNA_02051 +0.3 2.6 imidazolonepropionase related amidohydrolase compare
CCNA_01453 +0.3 1.2 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01527 +0.3 2.6 flagellin fljL compare
CCNA_00447 +0.3 2.3 chemotaxis protein cheD compare
CCNA_01592 +0.3 1.9 SN-glycerol-3-phosphate transport ATP-binding protein compare
CCNA_01748 +0.3 2.4 methyltransferase compare
CCNA_02339 +0.3 3.0 methyltransferase compare
CCNA_01617 +0.3 2.0 acetyltransferase compare
CCNA_02048 +0.3 2.8 TonB-dependent receptor compare
CCNA_02188 +0.3 2.1 PaaI-family thioesterase compare
CCNA_02741 +0.3 2.1 hypothetical protein compare
CCNA_03519 +0.3 1.5 PadR-family transcriptional regulator compare
CCNA_01185 +0.3 1.5 hypothetical protein compare
CCNA_02193 +0.3 1.4 hypothetical protein compare
CCNA_02749 +0.3 1.8 hypothetical protein compare
CCNA_01199 +0.3 2.1 glucose-1-phosphate thymidylyltransferase compare
CCNA_03368 +0.3 2.2 hypothetical protein compare
CCNA_00518 +0.3 2.0 LSU ribosomal protein L25P compare
CCNA_00508 +0.3 2.4 aspartate protease compare
CCNA_02976 +0.3 1.9 MCP-signal associated domain protein compare
CCNA_01057 +0.3 2.4 hypothetical protein compare
CCNA_01344 +0.3 1.8 hypothetical protein compare
CCNA_02616 +0.3 2.4 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_02330 +0.3 1.6 hypothetical protein compare
CCNA_01619 +0.3 1.8 NYN domain protein compare
CCNA_01678 +0.3 2.3 arginine N-succinyltransferase, beta chain compare
CCNA_01041 +0.3 1.1 hypothetical protein compare
CCNA_03178 +0.3 1.7 MerR-family transcriptional regulator compare
CCNA_03380 +0.3 1.9 hypothetical protein compare
CCNA_00542 +0.3 1.4 hypothetical protein compare
CCNA_00098 +0.3 1.5 hypothetical protein compare
CCNA_02345 +0.3 1.3 hypothetical protein compare
CCNA_03880 +0.3 1.4 ligand-binding SRPBCC domain protein compare
CCNA_00251 +0.3 2.4 zinc metalloprotease compare
CCNA_00495 +0.3 1.5 putative membrane protein insertion efficiency factor YidD compare
CCNA_00860 +0.3 1.2 holdfast inhibitor protein HfiA compare
CCNA_00129 +0.3 1.9 hypothetical protein compare
CCNA_01035 +0.3 2.6 gamma-glutamyltranspeptidase compare
CCNA_00164 +0.3 2.6 O-antigen polymerase compare


Specific Phenotypes

For 1 genes in this experiment

For stress CHIR-090 in Caulobacter crescentus NA1000

For stress CHIR-090 across organisms