Experiment set8IT011 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 10mM L-Ornithine

200 most important genes:

  gene name fitness t score description  
MMP_RS06350 -4.1 -8.4 HesA/MoeB/ThiF family protein compare
MMP_RS06355 -4.0 -3.2 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07345 -3.9 -9.0 glycine synthesis protein GlyXL (from data) compare
MMP_RS01195 -3.8 -1.3 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS07845 -3.7 -1.8 LL-diaminopimelate aminotransferase compare
MMP_RS08165 -3.7 -2.8 phosphoglycerate dehydrogenase compare
MMP_RS05515 -3.6 -8.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06680 -3.6 -17.9 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05500 -3.6 -9.0 2-isopropylmalate synthase compare
MMP_RS03640 -3.5 -3.8 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06685 -3.4 -17.2 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06715 -3.3 -18.7 cache domain-containing protein compare
MMP_RS07735 -3.3 -0.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS03015 -3.3 -13.6 GTP 3' 8-cyclase MoaA compare
MMP_RS06345 -3.3 -13.6 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06700 -3.2 -15.9 hypothetical protein compare
MMP_RS07630 -3.2 -1.7 ATP-binding cassette domain-containing protein compare
MMP_RS08940 -3.2 -1.1 MetS family NSS transporter small subunit compare
MMP_RS00305 -3.2 -2.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS01175 -3.1 -4.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03450 -3.1 -2.1 glycine synthesis protein GlyXS (from data) compare
MMP_RS01085 -3.1 -1.9 hypothetical protein compare
MMP_RS05425 -3.1 -4.6 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS06175 -3.1 -7.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS02010 -3.0 -10.7 PHP domain-containing protein compare
MMP_RS07635 -3.0 -8.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS05875 -3.0 -6.2 hydroxyethylthiazole kinase compare
MMP_RS01500 -3.0 -2.7 CBS domain-containing protein compare
MMP_RS05550 -2.9 -0.6 cation:proton antiporter compare
MMP_RS01385 -2.8 -0.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS03035 -2.8 -3.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS00295 -2.8 -2.1 gamma carbonic anhydrase family protein compare
MMP_RS04620 -2.7 -11.9 cobalt transporter CbiM compare
MMP_RS01020 -2.7 -1.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06720 -2.7 -8.2 response regulator transcription factor compare
MMP_RS07185 -2.7 -13.7 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS02355 -2.7 -3.2 30S ribosomal protein S27ae compare
MMP_RS04605 -2.7 -5.6 cobalt ECF transporter T component CbiQ compare
MMP_RS06705 -2.6 -8.4 formate/nitrite transporter family protein compare
MMP_RS07555 -2.6 -0.8 monovalent cation/H+ antiporter subunit E compare
MMP_RS06730 -2.6 -1.9 phosphopantothenate/pantothenate synthetase compare
MMP_RS05765 -2.6 -5.3 M42 family metallopeptidase compare
MMP_RS07365 -2.6 -12.5 2-phosphoglycerate kinase compare
MMP_RS04900 -2.6 -19.6 hypothetical protein compare
MMP_RS09020 -2.6 -1.6 hypothetical protein compare
MMP_RS04615 -2.6 -3.4 PDGLE domain-containing protein compare
MMP_RS05095 -2.6 -6.8 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS05090 -2.5 -9.1 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS00300 -2.5 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05060 -2.5 -11.4 AAA family ATPase compare
MMP_RS07445 -2.5 -6.1 helix-turn-helix domain-containing protein compare
MMP_RS06105 -2.5 -7.8 hydrogenase maturation peptidase HycI compare
MMP_RS07005 -2.5 -0.6 4Fe-4S binding protein compare
MMP_RS01985 -2.4 -6.6 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS08790 -2.4 -2.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS04870 -2.4 -6.0 TIGR02253 family HAD-type hydrolase compare
MMP_RS07525 -2.4 -9.2 4Fe-4S binding protein compare
MMP_RS02195 -2.4 -4.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07575 -2.4 -4.6 RNA ligase partner protein compare
MMP_RS01755 -2.4 -1.4 DUF2097 domain-containing protein compare
MMP_RS05080 -2.3 -13.9 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS09055 -2.3 -1.1 CAP domain-containing protein compare
MMP_RS05100 -2.3 -15.5 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS07545 -2.3 -1.3 HTH domain-containing protein compare
MMP_RS01545 -2.3 -1.1 CBS domain-containing protein compare
MMP_RS06975 -2.2 -2.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS05075 -2.2 -14.3 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS00685 -2.2 -4.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05085 -2.2 -8.4 AAA family ATPase compare
MMP_RS05055 -2.2 -13.7 DUF166 domain-containing protein compare
MMP_RS06840 -2.2 -0.9 DNA-directed RNA polymerase subunit N compare
MMP_RS00040 -2.2 -4.2 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS05070 -2.1 -8.1 4Fe-4S dicluster domain-containing protein compare
MMP_RS02280 -2.1 -0.9 DUF211 domain-containing protein compare
MMP_RS02800 -2.1 -4.4 nucleotidyltransferase domain-containing protein compare
MMP_RS08745 -2.1 -7.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS04125 -2.1 -3.0 TetR/AcrR family transcriptional regulator compare
MMP_RS01005 -2.1 -1.3 riboflavin synthase compare
MMP_RS01830 -2.1 -1.6 tRNA-Val compare
MMP_RS04780 -2.0 -2.8 ribonuclease P compare
MMP_RS06400 -2.0 -1.6 4Fe-4S binding protein compare
MMP_RS00695 -1.9 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS08635 -1.9 -1.6 UbiA family prenyltransferase compare
MMP_RS07380 -1.9 -1.7 transcription elongation factor Spt5 compare
MMP_RS05065 -1.9 -3.6 CooT family nickel-binding protein compare
MMP_RS00290 -1.9 -5.6 hypothetical protein compare
MMP_RS08330 -1.9 -4.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS00535 -1.9 -2.6 TIGR00375 family protein compare
MMP_RS08820 -1.9 -4.7 hypothetical protein compare
MMP_RS04875 -1.9 -5.0 energy-converting hydrogenase B subunit P compare
MMP_RS03600 -1.8 -2.0 triose-phosphate isomerase compare
MMP_RS01220 -1.8 -6.7 hypothetical protein compare
MMP_RS05555 -1.8 -1.2 DUF4040 domain-containing protein compare
MMP_RS08720 -1.7 -1.6 4Fe-4S binding protein compare
MMP_RS05920 -1.7 -0.5 50S ribosomal protein L37e compare
MMP_RS01610 -1.7 -2.9 hypothetical protein compare
MMP_RS08300 -1.7 -1.0 metal-sulfur cluster assembly factor compare
MMP_RS08460 -1.7 -2.3 proteasome-activating nucleotidase compare
MMP_RS06270 -1.7 -5.7 TIGR00300 family protein compare
MMP_RS06295 -1.7 -5.5 methanogenesis marker 14 protein compare
MMP_RS06925 -1.7 -2.3 ribonuclease VapC4 compare
MMP_RS04585 -1.7 -7.7 AIR synthase related protein compare
MMP_RS02345 -1.7 -2.7 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS07730 -1.7 -1.4 pyruvate synthase subunit beta compare
MMP_RS05430 -1.6 -4.5 TIGR00288 family NYN domain-containing protein compare
MMP_RS01380 -1.6 -4.6 PHP domain-containing protein compare
MMP_RS08350 -1.6 -0.8 hypothetical protein compare
MMP_RS05850 -1.5 -3.4 Ldh family oxidoreductase compare
MMP_RS05930 -1.5 -2.2 3-isopropylmalate dehydratase large subunit compare
MMP_RS06285 -1.5 -2.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS03025 -1.5 -4.4 molybdenum cofactor guanylyltransferase compare
MMP_RS07720 -1.5 -6.9 4Fe-4S binding protein compare
MMP_RS01250 -1.5 -3.1 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS01265 -1.5 -1.9 hypothetical protein compare
MMP_RS00115 -1.5 -7.7 radical SAM protein compare
MMP_RS06625 -1.5 -1.6 DNA primase compare
MMP_RS03550 -1.5 -1.7 DUF2124 domain-containing protein compare
MMP_RS01700 -1.5 -0.6 dihydroxy-acid dehydratase compare
MMP_RS06200 -1.4 -5.3 M24 family metallopeptidase compare
MMP_RS05505 -1.4 -6.3 class IV adenylate cyclase compare
MMP_RS06340 -1.4 -7.2 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08715 -1.4 -1.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03435 -1.4 -1.4 ketol-acid reductoisomerase compare
MMP_RS06885 -1.4 -2.3 50S ribosome-binding GTPase compare
MMP_RS01365 -1.4 -2.3 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS08435 -1.4 -1.8 Era-like GTP-binding protein compare
MMP_RS00620 -1.3 -4.0 4Fe-4S binding protein compare
MMP_RS03475 -1.3 -0.6 hypothetical protein compare
MMP_RS01800 -1.3 -3.2 TIGR00303 family protein compare
MMP_RS02930 -1.3 -1.8 class I SAM-dependent methyltransferase compare
MMP_RS00345 -1.3 -2.9 DUF2666 domain-containing protein compare
MMP_RS03145 -1.3 -4.9 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS05540 -1.3 -2.1 hypothetical protein compare
MMP_RS07600 -1.3 -2.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02170 -1.3 -3.1 CBS domain-containing protein compare
MMP_RS08615 -1.3 -1.3 flagellar protein G compare
MMP_RS01790 -1.3 -2.5 restriction endonuclease compare
MMP_RS01570 -1.2 -1.1 hypothetical protein compare
MMP_RS03305 -1.2 -3.9 winged helix-turn-helix domain-containing protein compare
MMP_RS01075 -1.2 -1.1 hypothetical protein compare
MMP_RS06865 -1.2 -2.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS02235 -1.2 -4.5 CBS domain-containing protein compare
MMP_RS04710 -1.2 -1.3 hypothetical protein compare
MMP_RS08645 -1.2 -4.9 UPF0179 family protein compare
MMP_RS07710 -1.2 -3.5 cell division protein FtsZ compare
MMP_RS03140 -1.2 -7.4 hypothetical protein compare
MMP_RS02340 -1.2 -1.3 DNA-directed RNA polymerase subunit E'' compare
MMP_RS03080 -1.2 -1.9 universal stress protein compare
MMP_RS07535 -1.1 -4.8 4Fe-4S binding protein compare
MMP_RS00455 -1.1 -4.1 orotate phosphoribosyltransferase-like protein compare
MMP_RS04990 -1.1 -4.0 aquaporin family protein compare
MMP_RS00050 -1.1 -4.5 AarF/UbiB family protein compare
MMP_RS08320 -1.1 -2.8 molybdopterin molybdotransferase MoeA compare
MMP_RS04790 -1.1 -6.8 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS01240 -1.1 -1.2 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS05815 -1.1 -1.6 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS04410 -1.1 -1.3 hypothetical protein compare
MMP_RS00985 -1.1 -3.2 CDC48 family AAA ATPase compare
MMP_RS06215 -1.1 -1.8 30S ribosomal protein S6e compare
MMP_RS02175 -1.1 -0.5 DUF1611 domain-containing protein compare
MMP_RS01110 -1.0 -2.3 FmdE family protein compare
MMP_RS01445 -1.0 -3.2 hypothetical protein compare
MMP_RS00965 -1.0 -1.0 hypothetical protein compare
MMP_RS02045 -1.0 -1.1 tRNA-Met compare
MMP_RS01225 -1.0 -3.0 DUF5379 domain-containing protein compare
MMP_RS07705 -1.0 -3.2 transcriptional regulator compare
MMP_RS01440 -1.0 -1.9 NAAT family transporter compare
MMP_RS07350 -1.0 -1.3 preprotein translocase subunit Sec61beta compare
MMP_RS04255 -1.0 -2.5 coenzyme F420 hydrogenase subunit beta compare
MMP_RS06020 -1.0 -2.6 archaeoflavoprotein AfpA compare
MMP_RS05910 -1.0 -1.3 cell division ATPase MinD compare
MMP_RS03315 -1.0 -0.6 ferrous iron transport protein A compare
MMP_RS07960 -1.0 -4.1 sugar phosphate isomerase/epimerase compare
MMP_RS01655 -1.0 -0.9 DsrE family protein compare
MMP_RS03445 -0.9 -0.6 methanogenesis marker 17 protein compare
MMP_RS00555 -0.9 -2.4 MFS transporter compare
MMP_RS06870 -0.9 -2.8 DedA family protein compare
MMP_RS05865 -0.9 -0.8 hypothetical protein compare
MMP_RS03205 -0.9 -0.9 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02885 -0.9 -6.3 molybdopterin biosynthesis protein compare
MMP_RS05245 -0.9 -3.5 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS05440 -0.9 -3.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS00130 -0.9 -0.7 nickel-responsive transcriptional regulator NikR compare
MMP_RS02165 -0.9 -3.7 tRNA-dihydrouridine synthase compare
MMP_RS07580 -0.9 -1.4 DUF356 domain-containing protein compare
MMP_RS06140 -0.9 -1.6 radical SAM protein compare
MMP_RS00060 -0.9 -1.2 3-dehydroquinate synthase II compare
MMP_RS03465 -0.9 -0.7 adenine phosphoribosyltransferase compare
MMP_RS05950 -0.9 -2.9 nickel-dependent hydrogenase large subunit compare
MMP_RS02530 -0.9 -1.8 type II toxin-antitoxin system mRNA interferase toxin RelE/StbE family compare
MMP_RS02610 -0.9 -1.4 DUF2162 domain-containing protein compare
MMP_RS04775 -0.9 -1.8 adenosylhomocysteinase compare
MMP_RS06120 -0.9 -1.1 UPF0147 family protein compare
MMP_RS00705 -0.9 -1.1 hypothetical protein compare
MMP_RS05265 -0.9 -1.3 2-isopropylmalate synthase compare
MMP_RS08210 -0.9 -1.1 phosphatidylglycerophosphatase A compare
MMP_RS02545 -0.8 -1.2 hypothetical protein compare
MMP_RS01140 -0.8 -1.0 molybdate ABC transporter permease subunit compare
MMP_RS00895 -0.8 -2.0 hypothetical protein compare
MMP_RS00570 -0.8 -0.8 protein-L-isoaspartate O-methyltransferase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 L-Ornithine across organisms