Experiment set8IT011 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

Group: stress
Media: Varel_Bryant_medium_Glucose + Dimetridazole (0.025 mM) + Dimethyl Sulfoxide (0.25 vol%)
Culturing: Btheta_ML6a, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Hans on 6/18/18
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, 20 mM D-Glucose, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)

Specific Phenotypes

For 3 genes in this experiment

For stress Dimetridazole in Bacteroides thetaiotaomicron VPI-5482

For stress Dimetridazole across organisms

SEED Subsystems

Subsystem #Specific
DNA repair, bacterial 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
2-carboxy-1,4-naphthoquinol biosynthesis 7 5 1
superpathway of demethylmenaquinol-8 biosynthesis I 9 7 1
superpathway of demethylmenaquinol-6 biosynthesis I 9 6 1
superpathway of demethylmenaquinol-9 biosynthesis 9 6 1
superpathway of menaquinol-8 biosynthesis I 10 8 1
superpathway of menaquinol-9 biosynthesis 10 7 1
superpathway of menaquinol-12 biosynthesis 10 7 1
superpathway of menaquinol-11 biosynthesis 10 7 1
superpathway of menaquinol-13 biosynthesis 10 7 1
superpathway of menaquinol-10 biosynthesis 10 7 1
superpathway of menaquinol-7 biosynthesis 10 7 1
superpathway of menaquinol-6 biosynthesis 10 7 1
superpathway of phylloquinol biosynthesis 15 6 1
superpathway of chorismate metabolism 59 38 1