Experiment set8IT010 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 10mM L-Ornithine

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +2.6 10.5 acetate--CoA ligase family protein compare
MMP_RS00520 +1.7 2.9 RNA polymerase Rpb4 family protein compare
MMP_RS07115 +1.6 7.3 MBL fold metallo-hydrolase compare
MMP_RS01960 +1.5 1.6 hypothetical protein compare
MMP_RS06395 +1.4 5.3 ThiF family adenylyltransferase compare
MMP_RS01895 +1.4 10.1 flippase compare
MMP_RS06670 +1.4 6.0 glucose-6-phosphate isomerase compare
MMP_RS05640 +1.4 6.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS07390 +1.3 2.7 cell division protein FtsZ compare
MMP_RS06575 +1.3 2.7 fluoride efflux transporter CrcB compare
MMP_RS07075 +1.3 3.6 phosphomannomutase/phosphoglucomutase compare
MMP_RS03215 +1.3 7.1 MBL fold metallo-hydrolase compare
MMP_RS08440 +1.2 3.9 cell division protein SepF compare
MMP_RS01875 +1.2 8.0 N-acetyltransferase compare
MMP_RS01880 +1.2 6.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS07695 +1.1 5.3 DUF3236 domain-containing protein compare
MMP_RS07875 +1.1 5.0 hypothetical protein compare
MMP_RS01910 +1.1 7.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS01885 +1.1 7.4 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS07125 +1.1 4.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS01900 +1.1 7.9 hypothetical protein compare
MMP_RS01905 +1.0 7.9 glycosyltransferase compare
MMP_RS07700 +1.0 6.4 DUF1188 domain-containing protein compare
MMP_RS07120 +1.0 5.0 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS01100 +1.0 1.5 ABC transporter ATP-binding protein compare
MMP_RS03300 +1.0 0.8 TOBE domain-containing protein compare
MMP_RS06570 +1.0 3.2 DUF190 domain-containing protein compare
MMP_RS06310 +1.0 3.8 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS01975 +1.0 7.5 hypothetical protein compare
MMP_RS04720 +1.0 2.5 DedA family protein compare
MMP_RS01925 +1.0 5.7 DUF1616 domain-containing protein compare
MMP_RS07130 +1.0 4.3 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS07955 +0.9 3.4 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS07820 +0.9 3.8 UPF0104 family protein compare
MMP_RS06525 +0.9 1.1 YciI family protein compare
MMP_RS00315 +0.9 4.6 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS04850 +0.9 7.1 UPF0254 family protein compare
MMP_RS08155 +0.9 3.4 hypothetical protein compare
MMP_RS09025 +0.9 1.2 hypothetical protein compare
MMP_RS01940 +0.9 3.7 MoxR family ATPase compare
MMP_RS06725 +0.9 5.1 hypothetical protein compare
MMP_RS02490 +0.9 2.7 hypothetical protein compare
MMP_RS03110 +0.8 3.0 glycosyltransferase family 2 protein compare
MMP_RS05355 +0.8 0.7 hypothetical protein compare
MMP_RS03560 +0.8 5.3 Na+/H+ antiporter NhaC family protein compare
MMP_RS01920 +0.8 6.0 glycosyltransferase family 2 protein compare
MMP_RS02470 +0.8 1.4 helix-turn-helix transcriptional regulator compare
MMP_RS01915 +0.7 5.9 DUF354 domain-containing protein compare
MMP_RS08775 +0.7 3.3 methanogenesis marker 9 domain-containing protein compare
MMP_RS07620 +0.7 2.2 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS01950 +0.7 4.6 hypothetical protein compare
MMP_RS00185 +0.7 4.9 potassium channel protein compare
MMP_RS05970 +0.7 2.7 class II SORL domain-containing protein compare
MMP_RS08500 +0.7 2.3 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS01955 +0.7 2.3 hypothetical protein compare
MMP_RS05835 +0.7 0.7 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS06610 +0.7 1.9 DUF2334 domain-containing protein compare
MMP_RS08090 +0.7 3.1 hypothetical protein compare
MMP_RS06600 +0.7 0.9 class III signal peptide-containing protein compare
MMP_RS06585 +0.7 1.2 DMT family protein compare
MMP_RS08890 +0.7 5.0 glycosyltransferase family 4 protein compare
MMP_RS07095 +0.7 1.6 PspC domain-containing protein compare
MMP_RS02675 +0.7 1.8 hypothetical protein compare
MMP_RS01930 +0.6 4.9 hypothetical protein compare
MMP_RS00730 +0.6 1.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS00675 +0.6 0.6 nitroreductase family protein compare
MMP_RS01945 +0.6 3.3 DUF4350 domain-containing protein compare
MMP_RS01775 +0.6 1.1 TIGR00297 family protein compare
MMP_RS05110 +0.6 3.0 16S ribosomal RNA methyltransferase A compare
MMP_RS08670 +0.6 4.1 metallophosphoesterase compare
MMP_RS02145 +0.6 3.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS06765 +0.6 2.5 flap endonuclease-1 compare
MMP_RS06900 +0.6 1.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS08275 +0.6 2.1 hypothetical protein compare
MMP_RS05535 +0.6 1.6 hypothetical protein compare
MMP_RS08705 +0.6 3.3 sulfopyruvate decarboxylase subunit beta compare
MMP_RS06535 +0.6 2.0 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS04740 +0.6 2.0 DUF473 domain-containing protein compare
MMP_RS01540 +0.6 1.8 DUF504 domain-containing protein compare
MMP_RS03245 +0.6 2.5 DNA repair and recombination protein RadB compare
MMP_RS03615 +0.6 4.2 4Fe-4S binding protein compare
MMP_RS00450 +0.6 1.0 4Fe-4S binding protein compare
MMP_RS07420 +0.6 2.9 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS07970 +0.6 1.9 hypothetical protein compare
MMP_RS02265 +0.6 2.1 nitroreductase family protein compare
MMP_RS06980 +0.6 1.9 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS06940 +0.6 1.7 polyprenyl diphosphate synthase compare
MMP_RS00725 +0.6 1.7 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS07895 +0.6 1.7 cytochrome c compare
MMP_RS01335 +0.6 0.9 prefoldin subunit beta compare
MMP_RS00635 +0.6 2.1 energy-coupling factor transporter transmembrane protein EcfT compare
MMP_RS00955 +0.6 3.6 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS05525 +0.6 2.9 calcium/sodium antiporter compare
MMP_RS01095 +0.5 2.1 iron ABC transporter permease compare
MMP_RS08315 +0.5 1.5 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS06110 +0.5 1.5 ATP-dependent protease LonB compare
MMP_RS06965 +0.5 2.7 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS01970 +0.5 3.8 TIGR04279 domain-containing protein compare
MMP_RS02915 +0.5 2.4 amino acid ABC transporter permease compare
MMP_RS06550 +0.5 3.5 AMP-binding protein compare
MMP_RS00880 +0.5 1.9 ribosome assembly RNA-binding protein YhbY compare
MMP_RS07890 +0.5 1.3 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS03840 +0.5 2.1 hypothetical protein compare
MMP_RS03785 +0.5 1.1 cupin domain-containing protein compare
MMP_RS00660 +0.5 2.2 alkaline phosphatase family protein compare
MMP_RS04520 +0.5 1.1 nucleoside deaminase compare
MMP_RS01890 +0.5 2.0 nucleotide sugar dehydrogenase compare
MMP_RS08620 +0.5 2.1 flagellar accessory protein FlaH compare
MMP_RS07840 +0.5 1.4 ribonuclease III compare
MMP_RS06745 +0.5 1.8 DUF2119 domain-containing protein compare
MMP_RS08470 +0.5 2.7 ATP-binding cassette domain-containing protein compare
MMP_RS06435 +0.5 2.6 CBS domain-containing protein compare
MMP_RS00825 +0.5 2.0 fumarylacetoacetate hydrolase family protein compare
MMP_RS04475 +0.5 2.1 nitrogen fixation compare
MMP_RS05580 +0.5 3.8 glycosyltransferase compare
MMP_RS02870 +0.5 2.3 hypothetical protein compare
MMP_RS03385 +0.5 0.5 cation diffusion facilitator family transporter compare
MMP_RS01640 +0.5 3.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMP_RS06520 +0.5 1.7 DUF1786 domain-containing protein compare
MMP_RS08555 +0.5 1.5 hypothetical protein compare
MMP_RS01935 +0.4 2.7 DUF58 domain-containing protein compare
MMP_RS03010 +0.4 2.5 cupin domain-containing protein compare
MMP_RS02390 +0.4 1.5 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS00960 +0.4 1.4 iron export ABC transporter permease subunit FetB compare
MMP_RS00735 +0.4 1.2 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS03280 +0.4 2.2 pyridoxamine 5'-phosphate oxidase family protein compare
MMP_RS06290 +0.4 1.0 DNA repair and recombination protein RadA compare
MMP_RS03320 +0.4 0.8 metal-dependent transcriptional regulator compare
MMP_RS05990 +0.4 1.4 DsrE family protein compare
MMP_RS01060 +0.4 2.0 calcium/sodium antiporter compare
MMP_RS01980 +0.4 2.4 trimeric intracellular cation channel family protein compare
MMP_RS07330 +0.4 3.4 membrane protein compare
MMP_RS01130 +0.4 1.8 flavoprotein compare
MMP_RS01620 +0.4 1.2 hypothetical protein compare
MMP_RS01435 +0.4 1.5 DMT family transporter compare
MMP_RS08175 +0.4 1.8 7-cyano-7-deazaguanine synthase compare
MMP_RS06480 +0.4 1.9 ABC transporter substrate-binding protein compare
MMP_RS06165 +0.4 2.4 ABC transporter permease compare
MMP_RS00085 +0.4 2.3 DNA cytosine methyltransferase compare
MMP_RS02605 +0.4 0.4 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS00910 +0.4 1.5 2-phosphosulfolactate phosphatase compare
MMP_RS01865 +0.4 0.6 GPR1/FUN34/YaaH family transporter compare
MMP_RS02440 +0.4 1.6 hypothetical protein compare
MMP_RS00700 +0.4 1.0 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS04145 +0.4 0.6 hypothetical protein compare
MMP_RS00800 +0.4 2.0 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS02305 +0.4 2.0 DUF378 domain-containing protein compare
MMP_RS08835 +0.4 1.3 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS07770 +0.3 1.1 alanine racemase compare
MMP_RS07135 +0.3 1.2 coenzyme F420 hydrogenase subunit beta compare
MMP_RS03150 +0.3 2.0 phosphoglycerate mutase compare
MMP_RS04350 +0.3 2.1 2-hydroxyacyl-CoA dehydratase family protein compare
MMP_RS06075 +0.3 1.8 class I SAM-dependent methyltransferase compare
MMP_RS05360 +0.3 1.6 hypothetical protein compare
MMP_RS00630 +0.3 2.0 ECF transporter S component compare
MMP_RS08625 +0.3 2.0 type II/IV secretion system ATPase subunit compare
MMP_RS08535 +0.3 1.4 bis-aminopropyl spermidine synthase family protein compare
MMP_RS01460 +0.3 0.9 hypothetical protein compare
MMP_RS08265 +0.3 0.9 rubrerythrin compare
MMP_RS03125 +0.3 1.4 cell division ATPase MinD compare
MMP_RS08755 +0.3 1.8 sodium:solute symporter family protein compare
MMP_RS00335 +0.3 1.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS02480 +0.3 0.6 hypothetical protein compare
MMP_RS08640 +0.3 1.5 TIM barrel protein compare
MMP_RS08260 +0.3 1.4 DUF99 family protein compare
MMP_RS06540 +0.3 0.7 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS02450 +0.3 0.8 hypothetical protein compare
MMP_RS01685 +0.3 0.9 indolepyruvate oxidoreductase subunit beta compare
MMP_RS03115 +0.3 2.2 hypothetical protein compare
MMP_RS08605 +0.3 1.4 flagellar protein E compare
MMP_RS07625 +0.3 0.5 cobalt ECF transporter T component CbiQ compare
MMP_RS08380 +0.3 1.1 phosphatase PAP2 family protein compare
MMP_RS01430 +0.3 1.0 mechanosensitive ion channel family protein compare
MMP_RS04550 +0.3 2.4 S-layer protein compare
MMP_RS02310 +0.3 0.5 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS00750 +0.3 0.5 fumarate hydratase compare
MMP_RS00385 +0.3 1.2 P-II family nitrogen regulator compare
MMP_RS09065 +0.3 2.1 hypothetical protein compare
MMP_RS06530 +0.3 1.1 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS04285 +0.3 1.1 Ni/Fe hydrogenase subunit alpha compare
MMP_RS06065 +0.3 2.3 iron ABC transporter substrate-binding protein compare
MMP_RS02940 +0.3 1.3 TatD family hydrolase compare
MMP_RS07850 +0.3 1.0 prephenate dehydratase compare
MMP_RS02985 +0.3 1.2 hypothetical protein compare
MMP_RS00645 +0.3 1.6 iron ABC transporter permease compare
MMP_RS04480 +0.3 2.0 lysine 2 3-aminomutase compare
MMP_RS05435 +0.3 0.8 5'/3'-nucleotidase SurE compare
MMP_RS03390 +0.3 0.9 malate dehydrogenase compare
MMP_RS05720 +0.3 1.1 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS04425 +0.3 2.2 APC family permease compare
MMP_RS06500 +0.3 1.7 ATP-binding protein compare
MMP_RS00795 +0.3 1.3 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS00310 +0.3 1.7 CBS domain-containing protein compare
MMP_RS06875 +0.3 1.5 FAD-dependent oxidoreductase compare
MMP_RS02475 +0.3 0.6 hypothetical protein compare
MMP_RS02645 +0.3 1.7 ArsR family transcriptional regulator compare
MMP_RS08485 +0.3 1.4 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS04250 +0.3 1.2 PC4/YdbC family ssDNA-binding protein compare
MMP_RS00940 +0.3 1.3 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS02725 +0.3 1.0 molybdate ABC transporter permease subunit compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 L-Ornithine across organisms