Experiment set8IT009 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

200 most important genes:

  gene name fitness t score description  
Xcc-8004.1615.1 -4.4 -3.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.4481.1 -4.3 -7.2 hypothetical protein compare
Xcc-8004.4620.1 -3.0 -10.6 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3324.1 -3.0 -5.7 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.4398.1 -2.8 -7.9 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.659.1 -2.8 -3.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2343.1 -2.7 -2.6 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.4112.1 -2.7 -4.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.622.1 -2.5 -4.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.3395.1 -2.4 -3.2 Transcriptional regulator, GntR family compare
Xcc-8004.1058.1 -2.4 -3.5 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.601.1 -2.4 -7.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.618.1 -2.4 -2.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.4596.1 -2.4 -9.7 hypothetical protein compare
Xcc-8004.271.1 -2.3 -3.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.621.1 -2.3 -5.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.5020.1 -2.3 -6.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.1059.1 -2.3 -7.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.1053.1 -2.3 -6.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.1010.1 -2.2 -7.1 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.3281.1 -2.2 -6.5 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.703.1 -2.1 -1.6 hypothetical protein compare
Xcc-8004.1049.1 -2.1 -6.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.2012.1 -2.1 -7.0 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.130.1 -2.1 -7.2 hypothetical protein compare
Xcc-8004.1705.1 -2.0 -2.0 FIG01209877: hypothetical protein compare
Xcc-8004.1616.1 -2.0 -1.7 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.2086.1 -2.0 -1.8 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.609.1 -1.9 -3.3 hypothetical protein compare
Xcc-8004.3049.1 -1.9 -8.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1676.1 -1.9 -8.4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.1964.1 -1.9 -9.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.2958.1 -1.9 -3.0 tryptophan-rich sensory protein compare
Xcc-8004.2387.1 -1.9 -2.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.2081.1 -1.9 -4.1 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.3321.1 -1.9 -2.2 FIG01209847: hypothetical protein compare
Xcc-8004.1967.1 -1.8 -7.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.4073.1 -1.8 -9.7 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.1060.1 -1.8 -8.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.3855.1 -1.8 -7.3 FIG01209965: hypothetical protein compare
Xcc-8004.4292.1 -1.7 -3.0 Taurine transport ATP-binding protein TauB compare
Xcc-8004.3282.1 -1.7 -6.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.957.1 -1.7 -4.7 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.3130.1 -1.7 -6.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.4503.1 -1.7 -4.0 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.1050.1 -1.7 -2.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.3722.1 -1.6 -1.0 HrpB7 protein compare
Xcc-8004.2217.1 -1.6 -3.9 FIG01209779: hypothetical protein compare
Xcc-8004.3361.1 -1.6 -4.7 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Xcc-8004.3536.1 -1.6 -5.7 FIG01210913: hypothetical protein compare
Xcc-8004.1955.1 -1.6 -6.1 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.4514.1 -1.6 -9.4 Glycosyltransferase compare
Xcc-8004.3728.1 -1.5 -1.5 hypothetical protein compare
Xcc-8004.2412.1 -1.5 -8.8 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.5363.1 -1.5 -2.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.2385.1 -1.5 -7.7 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.4439.1 -1.5 -8.0 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.3346.1 -1.5 -3.1 hypothetical protein compare
Xcc-8004.2320.1 -1.5 -4.8 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.1133.1 -1.5 -1.9 Rubredoxin compare
Xcc-8004.1437.1 -1.4 -4.4 Kup system potassium uptake protein compare
Xcc-8004.2977.1 -1.4 -11.2 hypothetical protein compare
Xcc-8004.4752.1 -1.4 -2.0 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.705.1 -1.4 -2.3 hypothetical protein compare
Xcc-8004.1436.1 -1.4 -1.7 Holliday junction DNA helicase RuvA compare
Xcc-8004.5019.1 -1.4 -1.8 FIG01210147: hypothetical protein compare
Xcc-8004.3786.1 -1.4 -1.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.2322.1 -1.4 -3.5 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.2316.1 -1.4 -8.3 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.1873.1 -1.4 -3.0 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.451.1 -1.4 -3.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.2011.1 -1.4 -2.4 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.44.1 -1.4 -11.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.649.1 -1.4 -1.5 hypothetical protein compare
Xcc-8004.5133.1 -1.4 -1.6 FIG01212313: hypothetical protein compare
Xcc-8004.608.1 -1.3 -5.8 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.4480.1 -1.3 -7.1 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.4510.1 -1.3 -1.7 ATP binding component of ABC-transporter compare
Xcc-8004.2079.1 -1.3 -2.4 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.577.1 -1.3 -3.9 Transcriptional regulator, MarR family compare
Xcc-8004.623.1 -1.3 -1.9 Phosphoserine phosphatase compare
Xcc-8004.4507.1 -1.3 -3.8 Glycosyltransferase compare
Xcc-8004.2386.1 -1.3 -7.9 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.3881.1 -1.3 -2.7 hypothetical protein compare
Xcc-8004.3230.1 -1.3 -1.8 Phage DNA invertase compare
Xcc-8004.3167.1 -1.3 -2.1 biotin synthesis protein compare
Xcc-8004.3283.1 -1.2 -6.2 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.4824.1 -1.2 -7.7 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1752.1 -1.2 -3.0 accessory protein compare
Xcc-8004.1763.1 -1.2 -3.5 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.4477.1 -1.2 -1.8 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.2319.1 -1.2 -3.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.1962.1 -1.2 -1.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.726.1 -1.2 -0.9 Putative preQ0 transporter compare
Xcc-8004.1961.1 -1.2 -1.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.4473.1 -1.2 -8.3 FIG01212400: hypothetical protein compare
Xcc-8004.3803.1 -1.2 -1.9 hypothetical protein compare
Xcc-8004.402.1 -1.2 -4.0 FIG01209770: hypothetical protein compare
Xcc-8004.1027.1 -1.2 -1.1 Two-component system sensor protein compare
Xcc-8004.2055.1 -1.1 -1.2 Mobile element protein compare
Xcc-8004.2420.1 -1.1 -4.3 PHA synthase subunit compare
Xcc-8004.2288.1 -1.1 -3.1 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase compare
Xcc-8004.4200.1 -1.1 -2.0 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.410.1 -1.1 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.934.1 -1.1 -1.7 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.2318.1 -1.1 -4.2 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.1057.1 -1.1 -6.1 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.2944.1 -1.1 -4.9 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.2323.1 -1.1 -4.6 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.645.1 -1.1 -1.2 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.4737.1 -1.1 -3.1 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.2563.1 -1.1 -1.7 FIG01210540: hypothetical protein compare
Xcc-8004.4168.1 -1.1 -3.4 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.4441.1 -1.1 -2.9 Tyrosine recombinase XerD compare
Xcc-8004.2339.1 -1.1 -1.6 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.1138.1 -1.1 -2.4 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.657.1 -1.1 -4.0 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.667.1 -1.0 -1.7 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.3208.1 -1.0 -1.4 Methyltransferase type 12 compare
Xcc-8004.43.1 -1.0 -4.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.1205.1 -1.0 -1.8 hypothetical protein compare
Xcc-8004.3310.1 -1.0 -3.6 Chromosome partition protein smc compare
Xcc-8004.2219.1 -1.0 -4.4 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.93.1 -1.0 -1.7 FIG01211857: hypothetical protein compare
Xcc-8004.2949.1 -1.0 -2.0 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.127.1 -1.0 -1.7 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.2421.1 -1.0 -7.5 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.1488.1 -1.0 -2.2 Coenzyme PQQ synthesis protein B compare
Xcc-8004.1200.1 -1.0 -1.3 hypothetical protein compare
Xcc-8004.4738.1 -1.0 -4.9 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.3537.1 -1.0 -3.5 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.5189.1 -1.0 -1.6 FIG01212821: hypothetical protein compare
Xcc-8004.1491.1 -1.0 -6.3 Glycosyltransferase compare
Xcc-8004.4948.1 -1.0 -1.3 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.3368.1 -1.0 -2.7 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Xcc-8004.3473.1 -1.0 -1.2 FIG01213437: hypothetical protein compare
Xcc-8004.2922.1 -1.0 -1.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1511.1 -1.0 -1.5 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.1361.1 -0.9 -1.6 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.1009.1 -0.9 -2.3 Lysophospholipase L1 and related esterases compare
Xcc-8004.4486.1 -0.9 -6.5 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.5335.1 -0.9 -1.2 FIG01214241: hypothetical protein compare
Xcc-8004.5140.1 -0.9 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.4025.1 -0.9 -5.2 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.4204.1 -0.9 -1.6 FIG01210014: hypothetical protein compare
Xcc-8004.731.1 -0.9 -3.1 hypothetical protein compare
Xcc-8004.459.1 -0.9 -1.2 4-hydroxybenzoate transporter compare
Xcc-8004.2954.1 -0.9 -6.3 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.456.1 -0.9 -1.3 carbonic anhydrase, family 3 compare
Xcc-8004.3954.1 -0.9 -3.1 HflC protein compare
Xcc-8004.4506.1 -0.9 -5.0 membrane protein WxcD compare
Xcc-8004.4908.1 -0.9 -2.4 hypothetical protein compare
Xcc-8004.4062.1 -0.9 -5.2 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Xcc-8004.3737.1 -0.9 -2.1 hypothetical protein compare
Xcc-8004.2881.1 -0.9 -2.3 FIG01210399: hypothetical protein compare
Xcc-8004.4569.1 -0.9 -2.2 Periplasmic chorismate mutase I precursor (EC 5.4.99.5) compare
Xcc-8004.1871.1 -0.9 -3.0 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.155.1 -0.9 -1.1 FIG01210803: hypothetical protein compare
Xcc-8004.1082.1 -0.9 -1.3 FIG01211203: hypothetical protein compare
Xcc-8004.2561.1 -0.9 -4.1 FIG01213638: hypothetical protein compare
Xcc-8004.1838.1 -0.9 -0.9 FIG002958: hypothetical protein compare
Xcc-8004.4046.1 -0.9 -4.7 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1822.1 -0.9 -1.8 Transcriptional regulator, MarR family compare
Xcc-8004.4318.1 -0.8 -2.5 hypothetical protein compare
Xcc-8004.2957.1 -0.8 -4.1 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.3492.1 -0.8 -0.8 FIG01211425: hypothetical protein compare
Xcc-8004.2946.1 -0.8 -2.2 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.3031.1 -0.8 -2.5 Methyltransferase (EC 2.1.1.-) compare
Xcc-8004.3979.1 -0.8 -4.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.1959.1 -0.8 -1.0 hypothetical protein compare
Xcc-8004.846.1 -0.8 -1.9 Protein of unknown function DUF484 compare
Xcc-8004.1622.1 -0.8 -1.9 Membrane protein with DUF350 domain compare
Xcc-8004.5252.1 -0.8 -3.4 FIG01210658: hypothetical protein compare
Xcc-8004.3663.1 -0.8 -2.0 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.4836.1 -0.8 -2.9 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1413.1 -0.8 -5.1 Outer membrane receptor proteins, mostly Fe transport compare
Xcc-8004.4102.1 -0.8 -1.7 FIG01211949: hypothetical protein compare
Xcc-8004.2627.1 -0.8 -1.7 Phi-Lf prophage-derived helix-destabilizing protein compare
Xcc-8004.4821.1 -0.8 -1.7 FIG01209726: hypothetical protein compare
Xcc-8004.2358.1 -0.8 -4.2 Segregation and condensation protein A compare
Xcc-8004.1372.1 -0.8 -2.2 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1241.1 -0.8 -2.9 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.1514.1 -0.8 -2.0 L-asparaginase (EC 3.5.1.1) compare
Xcc-8004.967.1 -0.8 -2.8 Endonuclease/exonuclease/phosphatase family protein compare
Xcc-8004.1652.1 -0.8 -3.9 putative Cytochrome bd2, subunit II compare
Xcc-8004.1336.1 -0.8 -3.6 two-component system sensor protein compare
Xcc-8004.1367.1 -0.8 -3.0 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4327.1 -0.8 -0.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1889.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.2239.1 -0.8 -1.3 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.668.1 -0.8 -3.2 Phosphatidate cytidylyltransferase (EC 2.7.7.41) compare
Xcc-8004.4879.1 -0.8 -2.5 FIG01209773: hypothetical protein compare
Xcc-8004.4505.1 -0.8 -3.4 membrane protein WxcE compare
Xcc-8004.2783.1 -0.8 -1.9 FIG01209963: hypothetical protein compare
Xcc-8004.1966.1 -0.8 -3.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.279.1 -0.8 -2.1 FIG01210420: hypothetical protein compare
Xcc-8004.1428.1 -0.8 -2.7 FIG01211346: hypothetical protein compare
Xcc-8004.2945.1 -0.8 -1.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.3875.1 -0.8 -0.9 FIG01212144: hypothetical protein compare
Xcc-8004.3131.1 -0.7 -2.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in in planta mesophyll experiments

For in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days across organisms