Experiment set8IT009 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 10mM L-Asparagine

200 most important genes:

  gene name fitness t score description  
MMP_RS06355 -4.7 -3.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01175 -4.5 -7.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06350 -4.3 -7.4 HesA/MoeB/ThiF family protein compare
MMP_RS07345 -3.9 -9.4 glycine synthesis protein GlyXL (from data) compare
MMP_RS06680 -3.9 -19.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05500 -3.8 -12.5 2-isopropylmalate synthase compare
MMP_RS02280 -3.7 -1.5 DUF211 domain-containing protein compare
MMP_RS06685 -3.7 -16.3 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS05515 -3.6 -10.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01455 -3.5 -10.4 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06700 -3.5 -18.9 hypothetical protein compare
MMP_RS03015 -3.5 -11.7 GTP 3' 8-cyclase MoaA compare
MMP_RS06840 -3.4 -1.5 DNA-directed RNA polymerase subunit N compare
MMP_RS06715 -3.4 -19.7 cache domain-containing protein compare
MMP_RS04900 -3.3 -23.9 hypothetical protein compare
MMP_RS06375 -3.3 -11.4 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06720 -3.2 -11.4 response regulator transcription factor compare
MMP_RS07845 -3.2 -4.2 LL-diaminopimelate aminotransferase compare
MMP_RS06345 -3.2 -13.8 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS04215 -3.2 -13.6 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS07635 -3.1 -9.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS08745 -3.0 -8.2 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS08720 -3.0 -2.6 4Fe-4S binding protein compare
MMP_RS06705 -3.0 -9.9 formate/nitrite transporter family protein compare
MMP_RS06270 -2.7 -7.8 TIGR00300 family protein compare
MMP_RS03450 -2.7 -3.4 glycine synthesis protein GlyXS (from data) compare
MMP_RS03475 -2.7 -1.2 hypothetical protein compare
MMP_RS06175 -2.7 -11.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS08790 -2.6 -3.3 translation initiation factor IF-2 subunit alpha compare
MMP_RS02010 -2.6 -10.9 PHP domain-containing protein compare
MMP_RS04605 -2.6 -7.0 cobalt ECF transporter T component CbiQ compare
MMP_RS01985 -2.5 -7.7 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS07445 -2.5 -8.7 helix-turn-helix domain-containing protein compare
MMP_RS07525 -2.5 -11.9 4Fe-4S binding protein compare
MMP_RS03035 -2.5 -5.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05430 -2.5 -6.3 TIGR00288 family NYN domain-containing protein compare
MMP_RS04780 -2.4 -4.9 ribonuclease P compare
MMP_RS02800 -2.4 -6.7 nucleotidyltransferase domain-containing protein compare
MMP_RS03640 -2.4 -4.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS09020 -2.3 -2.5 hypothetical protein compare
MMP_RS07735 -2.3 -1.2 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06975 -2.2 -3.7 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS01545 -2.2 -1.7 CBS domain-containing protein compare
MMP_RS00040 -2.2 -4.6 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS01500 -2.2 -2.6 CBS domain-containing protein compare
MMP_RS08635 -2.2 -2.7 UbiA family prenyltransferase compare
MMP_RS02235 -2.2 -10.0 CBS domain-containing protein compare
MMP_RS06295 -2.2 -8.5 methanogenesis marker 14 protein compare
MMP_RS01830 -2.2 -2.0 tRNA-Val compare
MMP_RS08165 -2.2 -3.0 phosphoglycerate dehydrogenase compare
MMP_RS03960 -2.1 -1.6 hypothetical protein compare
MMP_RS05875 -2.1 -7.3 hydroxyethylthiazole kinase compare
MMP_RS04620 -2.1 -11.6 cobalt transporter CbiM compare
MMP_RS00130 -2.1 -1.7 nickel-responsive transcriptional regulator NikR compare
MMP_RS04870 -2.0 -7.1 TIGR02253 family HAD-type hydrolase compare
MMP_RS01020 -2.0 -1.6 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01005 -2.0 -2.0 riboflavin synthase compare
MMP_RS07185 -2.0 -12.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04615 -2.0 -4.4 PDGLE domain-containing protein compare
MMP_RS01365 -2.0 -4.5 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS08715 -2.0 -2.9 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07365 -2.0 -13.7 2-phosphoglycerate kinase compare
MMP_RS05920 -2.0 -0.8 50S ribosomal protein L37e compare
MMP_RS05765 -1.9 -6.0 M42 family metallopeptidase compare
MMP_RS07605 -1.9 -3.8 diadenylate cyclase compare
MMP_RS06925 -1.9 -4.2 ribonuclease VapC4 compare
MMP_RS06105 -1.9 -6.2 hydrogenase maturation peptidase HycI compare
MMP_RS07630 -1.9 -2.1 ATP-binding cassette domain-containing protein compare
MMP_RS01220 -1.9 -7.1 hypothetical protein compare
MMP_RS00695 -1.9 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS03435 -1.9 -2.3 ketol-acid reductoisomerase compare
MMP_RS07730 -1.9 -2.2 pyruvate synthase subunit beta compare
MMP_RS01610 -1.9 -3.8 hypothetical protein compare
MMP_RS03025 -1.9 -6.9 molybdenum cofactor guanylyltransferase compare
MMP_RS06400 -1.9 -2.1 4Fe-4S binding protein compare
MMP_RS06870 -1.9 -5.6 DedA family protein compare
MMP_RS05930 -1.9 -3.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS08460 -1.9 -3.2 proteasome-activating nucleotidase compare
MMP_RS00305 -1.8 -2.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS05505 -1.8 -7.9 class IV adenylate cyclase compare
MMP_RS02355 -1.8 -4.4 30S ribosomal protein S27ae compare
MMP_RS01265 -1.8 -3.2 hypothetical protein compare
MMP_RS08320 -1.7 -4.3 molybdopterin molybdotransferase MoeA compare
MMP_RS05060 -1.7 -7.9 AAA family ATPase compare
MMP_RS07575 -1.7 -4.5 RNA ligase partner protein compare
MMP_RS02170 -1.7 -6.2 CBS domain-containing protein compare
MMP_RS08820 -1.7 -6.3 hypothetical protein compare
MMP_RS08760 -1.6 -2.0 hypothetical protein compare
MMP_RS07005 -1.6 -0.8 4Fe-4S binding protein compare
MMP_RS00685 -1.6 -3.7 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06895 -1.6 -1.9 selenocysteine-specific translation elongation factor compare
MMP_RS01800 -1.6 -3.9 TIGR00303 family protein compare
MMP_RS04710 -1.6 -2.3 hypothetical protein compare
MMP_RS00295 -1.6 -2.7 gamma carbonic anhydrase family protein compare
MMP_RS05425 -1.6 -4.2 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS02240 -1.6 -4.1 methanogenesis marker 7 protein compare
MMP_RS04585 -1.5 -8.9 AIR synthase related protein compare
MMP_RS08300 -1.5 -1.5 metal-sulfur cluster assembly factor compare
MMP_RS02245 -1.5 -4.0 hypothetical protein compare
MMP_RS01700 -1.5 -1.0 dihydroxy-acid dehydratase compare
MMP_RS04875 -1.5 -4.9 energy-converting hydrogenase B subunit P compare
MMP_RS05540 -1.5 -2.9 hypothetical protein compare
MMP_RS00455 -1.5 -7.8 orotate phosphoribosyltransferase-like protein compare
MMP_RS02885 -1.5 -10.4 molybdopterin biosynthesis protein compare
MMP_RS06285 -1.5 -2.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS00720 -1.5 -6.2 metal-dependent hydrolase compare
MMP_RS05095 -1.4 -7.1 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS01745 -1.4 -5.2 AMP phosphorylase compare
MMP_RS05925 -1.4 -3.5 small nuclear ribonucleoprotein compare
MMP_RS00235 -1.4 -7.2 HDIG domain-containing protein compare
MMP_RS01380 -1.4 -5.2 PHP domain-containing protein compare
MMP_RS05245 -1.4 -8.8 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS07960 -1.4 -5.7 sugar phosphate isomerase/epimerase compare
MMP_RS05090 -1.4 -7.8 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05055 -1.4 -10.6 DUF166 domain-containing protein compare
MMP_RS06730 -1.4 -1.6 phosphopantothenate/pantothenate synthetase compare
MMP_RS05085 -1.4 -7.0 AAA family ATPase compare
MMP_RS02195 -1.4 -3.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07090 -1.4 -6.9 tRNA (adenine-N1)-methyltransferase compare
MMP_RS05100 -1.4 -10.2 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS02605 -1.3 -1.2 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS02340 -1.3 -1.8 DNA-directed RNA polymerase subunit E'' compare
MMP_RS06315 -1.3 -1.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS05080 -1.3 -8.2 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS02045 -1.3 -2.0 tRNA-Met compare
MMP_RS05075 -1.3 -9.9 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS05555 -1.3 -1.3 DUF4040 domain-containing protein compare
MMP_RS00620 -1.3 -5.9 4Fe-4S binding protein compare
MMP_RS00290 -1.3 -5.0 hypothetical protein compare
MMP_RS05285 -1.3 -5.5 MMPL family transporter compare
MMP_RS08330 -1.2 -4.1 NADH-quinone oxidoreductase subunit H compare
MMP_RS08200 -1.2 -9.0 archaeosine synthase subunit alpha compare
MMP_RS04775 -1.2 -3.0 adenosylhomocysteinase compare
MMP_RS07710 -1.2 -6.2 cell division protein FtsZ compare
MMP_RS00325 -1.2 -1.9 RNA-binding protein compare
MMP_RS00300 -1.2 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07555 -1.2 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS03600 -1.2 -1.8 triose-phosphate isomerase compare
MMP_RS06130 -1.2 -3.0 peptidylprolyl isomerase compare
MMP_RS02900 -1.2 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07860 -1.1 -1.0 hypothetical protein compare
MMP_RS03315 -1.1 -1.3 ferrous iron transport protein A compare
MMP_RS08195 -1.1 -5.6 hypothetical protein compare
MMP_RS04890 -1.1 -0.8 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07685 -1.1 -5.9 TIGR01212 family radical SAM protein compare
MMP_RS00985 -1.1 -5.1 CDC48 family AAA ATPase compare
MMP_RS05070 -1.1 -4.5 4Fe-4S dicluster domain-containing protein compare
MMP_RS00975 -1.1 -7.3 HD domain-containing protein compare
MMP_RS07600 -1.1 -2.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07545 -1.1 -1.4 HTH domain-containing protein compare
MMP_RS07705 -1.1 -5.2 transcriptional regulator compare
MMP_RS05280 -1.1 -7.1 COG1361 S-layer family protein compare
MMP_RS01570 -1.1 -1.6 hypothetical protein compare
MMP_RS08615 -1.1 -2.1 flagellar protein G compare
MMP_RS05510 -1.0 -3.2 Rrf2 family transcriptional regulator compare
MMP_RS04090 -1.0 -2.4 hypothetical protein compare
MMP_RS05265 -1.0 -1.9 2-isopropylmalate synthase compare
MMP_RS07380 -1.0 -1.9 transcription elongation factor Spt5 compare
MMP_RS01440 -1.0 -4.1 NAAT family transporter compare
MMP_RS07720 -1.0 -6.7 4Fe-4S binding protein compare
MMP_RS02345 -1.0 -2.4 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01225 -1.0 -4.5 DUF5379 domain-containing protein compare
MMP_RS00110 -1.0 -2.6 hypothetical protein compare
MMP_RS01755 -1.0 -0.9 DUF2097 domain-containing protein compare
MMP_RS00555 -1.0 -3.9 MFS transporter compare
MMP_RS01575 -1.0 -5.4 aldolase compare
MMP_RS03445 -1.0 -0.9 methanogenesis marker 17 protein compare
MMP_RS01445 -0.9 -4.9 hypothetical protein compare
MMP_RS06865 -0.9 -1.4 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06200 -0.9 -5.2 M24 family metallopeptidase compare
MMP_RS05845 -0.9 -1.8 tRNA-intron lyase compare
MMP_RS00115 -0.9 -5.8 radical SAM protein compare
MMP_RS05850 -0.9 -2.8 Ldh family oxidoreductase compare
MMP_RS00895 -0.9 -3.2 hypothetical protein compare
MMP_RS05550 -0.9 -0.5 cation:proton antiporter compare
MMP_RS06885 -0.9 -1.8 50S ribosome-binding GTPase compare
MMP_RS03580 -0.9 -2.5 signal recognition particle-docking protein FtsY compare
MMP_RS07765 -0.9 -4.5 sodium:alanine symporter family protein compare
MMP_RS06915 -0.9 -2.7 metallophosphoesterase compare
MMP_RS02175 -0.9 -0.7 DUF1611 domain-containing protein compare
MMP_RS08645 -0.8 -3.6 UPF0179 family protein compare
MMP_RS07580 -0.8 -2.2 DUF356 domain-containing protein compare
MMP_RS01250 -0.8 -2.0 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS06920 -0.8 -4.6 AAA family ATPase compare
MMP_RS06625 -0.8 -1.5 DNA primase compare
MMP_RS05800 -0.8 -4.9 B12-binding domain-containing radical SAM protein compare
MMP_RS05065 -0.8 -2.3 CooT family nickel-binding protein compare
MMP_RS02410 -0.8 -1.8 ABC transporter substrate-binding protein compare
MMP_RS03080 -0.8 -2.0 universal stress protein compare
MMP_RS01240 -0.8 -0.8 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS01325 -0.7 -1.6 dihydroneopterin aldolase family protein compare
MMP_RS03235 -0.7 -2.3 tRNA pseudouridine(13) synthase TruD compare
MMP_RS07535 -0.7 -4.4 4Fe-4S binding protein compare
MMP_RS00060 -0.7 -1.3 3-dehydroquinate synthase II compare
MMP_RS06340 -0.7 -4.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07790 -0.7 -3.3 segregation/condensation protein A compare
MMP_RS01665 -0.7 -2.3 DUF2111 domain-containing protein compare
MMP_RS09055 -0.7 -0.8 CAP domain-containing protein compare
MMP_RS05910 -0.7 -1.9 cell division ATPase MinD compare
MMP_RS03485 -0.7 -2.0 TIGR00267 family protein compare


Specific Phenotypes

For 2 genes in this experiment

For nutrient t1 L-Asparagine in Methanococcus maripaludis S2

For nutrient t1 L-Asparagine across organisms