Experiment set8IT007 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Asparagine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4826 -6.5 -4.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4597 -6.3 -4.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3630 -6.2 -4.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3783 -6.0 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3248 -6.0 -5.8 Probable transmembrane protein compare
Pf6N2E2_64 -5.9 -4.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_71 -5.9 -5.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_77 -5.8 -4.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4825 -5.7 -6.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5175 -5.5 -10.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3782 -5.4 -3.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4047 -5.3 -3.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3253 -5.1 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4596 -5.1 -9.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2073 -5.0 -3.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3839 -5.0 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_66 -4.7 -11.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5177 -4.7 -11.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5176 -4.6 -9.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_4759 -4.5 -16.4 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_4762 -4.3 -5.1 Biotin synthesis protein BioH compare
Pf6N2E2_3252 -4.3 -9.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4048 -4.2 -9.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5258 -4.2 -10.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_302 -4.2 -7.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3940 -4.1 -12.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4564 -4.1 -10.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3842 -3.9 -6.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3610 -3.8 -4.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4087 -3.8 -11.3 L-asparaginase (EC 3.5.1.1) (from data) conserved
Pf6N2E2_3841 -3.7 -6.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3932 -3.5 -4.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2465 -3.4 -6.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5728 -3.3 -6.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4638 -3.3 -3.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4797 -3.3 -2.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4601 -3.3 -3.8 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5257 -3.2 -10.4 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3251 -3.2 -11.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4764 -3.2 -6.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2074 -3.1 -2.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5527 -3.1 -3.0 Cold shock protein CspC compare
Pf6N2E2_4761 -3.1 -10.3 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5579 -3.0 -8.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_5950 -2.9 -5.0 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4763 -2.8 -11.2 Biotin synthesis protein BioC compare
Pf6N2E2_3938 -2.8 -13.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3170 -2.6 -6.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3696 -2.6 -1.7 hypothetical protein compare
Pf6N2E2_5564 -2.5 -13.4 Membrane protein glpM compare
Pf6N2E2_5014 -2.5 -1.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_63 -2.4 -4.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5156 -2.4 -3.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4160 -2.4 -2.1 Cytochrome c5 compare
Pf6N2E2_2646 -2.3 -2.1 FIG00953416: hypothetical protein compare
Pf6N2E2_70 -2.3 -5.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4631 -2.3 -8.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_3667 -2.1 -2.0 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5676 -2.1 -4.7 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_2885 -2.0 -6.6 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3346 -2.0 -7.1 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2899 -2.0 -5.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_5155 -2.0 -3.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4009 -2.0 -9.7 GGDEF domain protein compare
Pf6N2E2_5006 -1.9 -6.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_760 -1.9 -11.2 Na+/H+ antiporter NhaB compare
Pf6N2E2_3908 -1.9 -6.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3534 -1.8 -3.3 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3947 -1.8 -2.2 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_3899 -1.8 -7.2 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_5103 -1.8 -1.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4276 -1.8 -4.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4086 -1.7 -10.4 sodium/alanine transporter conserved
Pf6N2E2_3537 -1.7 -3.9 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_3349 -1.7 -2.5 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2218 -1.7 -4.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3984 -1.7 -8.0 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5555 -1.6 -1.6 Cold shock protein CspA compare
Pf6N2E2_3460 -1.6 -1.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2072 -1.6 -3.0 hypothetical protein compare
Pf6N2E2_5316 -1.5 -2.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2586 -1.5 -1.8 Hpt domain protein compare
Pf6N2E2_3535 -1.5 -5.4 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf6N2E2_1932 -1.4 -4.3 Transcriptional regulator, IclR family compare
Pf6N2E2_1606 -1.4 -6.0 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_2536 -1.4 -2.1 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_3532 -1.4 -5.2 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_2549 -1.4 -1.9 hypothetical protein compare
Pf6N2E2_50 -1.4 -5.1 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_178 -1.4 -1.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_942 -1.4 -2.8 Mll6465 protein compare
Pf6N2E2_5746 -1.3 -3.1 Cobalamin synthase compare
Pf6N2E2_5742 -1.3 -5.9 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_5740 -1.3 -3.2 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_5178 -1.3 -1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_1718 -1.3 -3.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_3260 -1.3 -4.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3060 -1.3 -2.4 Outer membrane protein H precursor compare
Pf6N2E2_2473 -1.3 -1.4 Major outer membrane lipoprotein I compare
Pf6N2E2_5508 -1.2 -2.0 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_1705 -1.2 -1.7 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5743 -1.2 -4.7 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_5841 -1.2 -1.3 GlcG protein compare
Pf6N2E2_51 -1.2 -5.7 hypothetical protein compare
Pf6N2E2_5739 -1.2 -1.2 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3876 -1.2 -3.8 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_4743 -1.2 -1.0 hypothetical protein compare
Pf6N2E2_3941 -1.2 -2.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2068 -1.2 -5.1 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_2065 -1.2 -3.2 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_2261 -1.1 -4.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_2513 -1.1 -3.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2510 -1.1 -3.4 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5738 -1.1 -5.5 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_3171 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_2060 -1.1 -7.5 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1717 -1.1 -5.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_2984 -1.1 -1.2 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_58 -1.1 -2.7 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_4187 -1.1 -2.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2018 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_2313 -1.1 -2.6 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5520 -1.1 -4.7 Sensory box histidine kinase compare
Pf6N2E2_2282 -1.1 -3.0 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_88 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_2003 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_4075 -1.1 -3.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2217 -1.1 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3198 -1.0 -1.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5741 -1.0 -4.5 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_5419 -1.0 -2.3 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_4072 -1.0 -3.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3258 -1.0 -3.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_953 -1.0 -2.7 FIG00958851: hypothetical protein compare
Pf6N2E2_3477 -1.0 -1.7 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_4673 -1.0 -2.8 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_5972 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_4153 -1.0 -1.3 Sensory box histidine kinase compare
Pf6N2E2_2059 -0.9 -2.9 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1124 -0.9 -1.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2488 -0.9 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2518 -0.9 -1.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_1294 -0.9 -1.8 Carbon starvation protein A compare
Pf6N2E2_2420 -0.9 -2.4 hypothetical protein compare
Pf6N2E2_3282 -0.9 -1.5 FIG005080: Possible exported protein compare
Pf6N2E2_1987 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_160 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_4795 -0.9 -3.7 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY compare
Pf6N2E2_4206 -0.9 -0.8 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4159 -0.9 -2.3 Cytochrome c4 compare
Pf6N2E2_2012 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_2277 -0.9 -1.8 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5088 -0.9 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4943 -0.9 -1.9 PspA/IM30 family protein compare
Pf6N2E2_4416 -0.9 -1.3 Tyrosine recombinase XerC compare
Pf6N2E2_2285 -0.9 -1.2 FIG00954079: hypothetical protein compare
Pf6N2E2_2756 -0.9 -4.0 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3264 -0.9 -1.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3826 -0.9 -3.5 Nitrogen regulation protein NR(I) compare
Pf6N2E2_1797 -0.9 -1.0 Transcriptional regulator compare
Pf6N2E2_423 -0.8 -1.5 Putative phosphatase YfbT compare
Pf6N2E2_4084 -0.8 -3.4 Transcriptional regulator compare
Pf6N2E2_1081 -0.8 -1.4 probable membrane protein YPO3302 compare
Pf6N2E2_4494 -0.8 -3.2 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_3533 -0.8 -2.8 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_1577 -0.8 -2.9 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_3762 -0.8 -3.7 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_2706 -0.8 -1.3 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4584 -0.8 -1.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5252 -0.8 -1.4 FIG00956396: hypothetical protein compare
Pf6N2E2_2903 -0.8 -2.8 Heme oxygenase HemO, associated with heme uptake compare
Pf6N2E2_5261 -0.8 -0.9 FIG00956983: hypothetical protein compare
Pf6N2E2_2940 -0.8 -3.7 OmpA family protein compare
Pf6N2E2_5679 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_5494 -0.8 -2.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_3825 -0.8 -2.4 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_5328 -0.8 -3.1 FIG00958649: hypothetical protein compare
Pf6N2E2_613 -0.8 -1.2 lipoprotein, putative compare
Pf6N2E2_623 -0.8 -1.2 FIG00954674: hypothetical protein compare
Pf6N2E2_6045 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_5030 -0.8 -4.0 Transcriptional regulator, AsnC family compare
Pf6N2E2_3351 -0.8 -2.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_6046 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_1660 -0.8 -1.9 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_2061 -0.8 -1.8 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_1317 -0.8 -2.4 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_4454 -0.8 -3.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2106 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_2223 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_4077 -0.7 -1.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5745 -0.7 -3.5 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Pf6N2E2_5241 -0.7 -1.8 Aminopeptidase N compare
Pf6N2E2_1497 -0.7 -2.3 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_2219 -0.7 -1.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3786 -0.7 -2.3 Twin-arginine translocation protein TatC compare
Pf6N2E2_125 -0.7 -2.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_671 -0.7 -2.6 2-methylaconitate racemase compare
Pf6N2E2_65 -0.7 -2.4 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf6N2E2_3072 -0.7 -4.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_933 -0.7 -3.2 Glutathione S-transferase (EC 2.5.1.18) compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Asparagine in Pseudomonas fluorescens FW300-N2E2

For nitrogen source L-Asparagine across organisms