Experiment set8IT006 for Pseudomonas fluorescens FW300-N2E2

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L-Serine nitrogen source

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_5557 -3.2 -9.0 L-serine ammonia-lyase (EC 4.3.1.17) (from data) conserved
Pf6N2E2_1190 -3.0 -7.1 Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase compare
Pf6N2E2_1189 -2.7 -5.2 Thioredoxin reductase (EC 1.8.1.9) compare
Pf6N2E2_4754 -2.1 -9.7 Protein rarD compare
Pf6N2E2_802 -2.1 -7.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_4809 -1.8 -8.6 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_2845 -1.8 -6.1 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_4412 -1.7 -5.9 Ammonium transporter conserved
Pf6N2E2_4513 -1.6 -6.4 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf6N2E2_2862 -1.5 -5.6 Uncharacterized PLP-dependent aminotransferase YfdZ compare
Pf6N2E2_5989 -1.5 -7.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) conserved
Pf6N2E2_4498 -1.2 -6.4 Outer membrane porin, OprD family compare
Pf6N2E2_4337 +1.1 5.9 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_5296 +1.1 6.6 Threonine synthase (EC 4.2.3.1) compare
Pf6N2E2_4334 +1.2 6.6 Uncharacterized protein ImpC compare
Pf6N2E2_4926 +1.2 7.4 hypothetical protein compare
Pf6N2E2_4702 +1.2 5.9 DgcA Dimethylglycine demethylase subunit A conserved
Pf6N2E2_4341 +1.2 9.1 IcmF-related protein compare
Pf6N2E2_5459 +1.3 6.9 D-serine/D-alanine/glycine transporter compare
Pf6N2E2_61 +1.3 5.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3456 +1.3 7.4 Inner membrane protein YfiN compare
Pf6N2E2_5404 +1.3 5.2 ABC transporter for D-Alanine, permease component 1 (from data) conserved
Pf6N2E2_4193 +1.3 8.4 Signal transduction histidine kinase compare
Pf6N2E2_4028 +1.4 6.8 Biofilm PGA synthesis auxiliary protein PgaD compare
Pf6N2E2_2329 +1.4 6.4 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf6N2E2_4336 +1.4 6.5 Uncharacterized protein ImpA compare
Pf6N2E2_4031 +1.5 11.6 Biofilm PGA outer membrane secretin PgaA compare
Pf6N2E2_4194 +1.5 8.4 Two-component response regulator compare
Pf6N2E2_4030 +1.7 11.8 Biofilm PGA synthesis deacetylase PgaB (EC 3.-) compare
Pf6N2E2_3613 +1.7 8.1 GTP-binding protein HflX compare
Pf6N2E2_5402 +1.7 6.4 ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) conserved
Pf6N2E2_6001 +1.7 8.1 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_5860 +1.7 8.8 Branched-chain amino acid transport system carrier protein compare
Pf6N2E2_3621 +1.8 8.6 putative transporter, required for glycine utilization (from data) compare
Pf6N2E2_2057 +1.9 8.7 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf6N2E2_4029 +1.9 10.6 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) compare
Pf6N2E2_2441 +2.0 5.6 putative ATP/GTP-binding protein compare
Pf6N2E2_5403 +2.0 8.8 ABC transporter for D-Alanine, permease component 2 (from data) compare
Pf6N2E2_5491 +2.0 11.8 FOG: GGDEF domain compare
Pf6N2E2_5025 +2.1 17.2 Sensor histidine kinase compare
Pf6N2E2_3983 +2.2 9.3 Membrane bound c-di-GMP receptor LapD compare
Pf6N2E2_2587 +2.3 12.5 Serine phosphatase RsbU, regulator of sigma subunit compare
Pf6N2E2_4087 +2.7 11.4 L-asparaginase (EC 3.5.1.1) (from data) conserved
Pf6N2E2_5559 +3.3 6.4 Glycine cleavage system H protein compare
Pf6N2E2_4086 +5.1 42.7 sodium/alanine transporter compare
Pf6N2E2_4683 +6.3 9.3 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) compare


Specific phenotypes for nitrogen source L-Serine across organisms