Experiment set8IT006 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -5.5 -3.8 Probable transmembrane protein compare
Pf6N2E2_3060 -5.3 -3.2 Outer membrane protein H precursor compare
Pf6N2E2_4826 -5.0 -3.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_71 -4.9 -3.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5013 -4.9 -3.4 Putative membrane protein compare
Pf6N2E2_3516 -4.7 -2.8 Probable transmembrane protein compare
Pf6N2E2_5177 -4.6 -4.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4764 -4.6 -3.2 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_3783 -4.6 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4071 -4.5 -3.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_77 -4.4 -3.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5175 -4.3 -5.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4596 -4.2 -5.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2258 -4.1 -5.7 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2588 -4.1 -2.8 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_3940 -4.1 -5.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3253 -4.0 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3842 -4.0 -3.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3782 -3.9 -2.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3825 -3.9 -3.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_4597 -3.8 -6.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3751 -3.8 -9.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_1613 -3.8 -4.3 short-chain dehydrogenase/reductase compare
Pf6N2E2_4564 -3.8 -8.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5252 -3.8 -2.2 FIG00956396: hypothetical protein compare
Pf6N2E2_75 -3.8 -3.2 Colicin V production protein compare
Pf6N2E2_4048 -3.8 -5.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5676 -3.7 -3.9 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3826 -3.7 -3.6 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5176 -3.7 -6.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5014 -3.7 -1.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4279 -3.7 -8.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5086 -3.6 -1.2 hypothetical protein compare
Pf6N2E2_50 -3.6 -6.9 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4579 -3.6 -2.5 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_3752 -3.6 -13.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5006 -3.6 -6.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_658 -3.6 -8.9 sensor histidine kinase compare
Pf6N2E2_3839 -3.5 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_64 -3.5 -3.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2413 -3.4 -1.7 FIG074102: hypothetical protein compare
Pf6N2E2_4825 -3.4 -6.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_1966 -3.4 -3.3 SAM-dependent methyltransferases compare
Pf6N2E2_2519 -3.3 -1.1 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5150 -3.3 -4.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3984 -3.3 -11.1 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3835 -3.3 -3.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3277 -3.3 -2.3 FagA protein compare
Pf6N2E2_5560 -3.2 -3.1 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_5557 -3.2 -9.0 L-serine ammonia-lyase (EC 4.3.1.17) (from data) conserved
Pf6N2E2_2852 -3.1 -9.3 GGDEF domain/EAL domain protein compare
Pf6N2E2_2526 -3.1 -4.4 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_5723 -3.1 -7.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_477 -3.1 -4.2 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_1187 -3.0 -7.0 Probable nikkomycin biosynthesis protein, carboxylase compare
Pf6N2E2_63 -3.0 -4.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_1186 -3.0 -5.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_1190 -3.0 -7.1 Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase compare
Pf6N2E2_5780 -3.0 -6.8 Periplasmic protease compare
Pf6N2E2_4372 -3.0 -2.0 FIG00460773: hypothetical protein compare
Pf6N2E2_4278 -2.9 -8.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3264 -2.9 -2.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_350 -2.9 -1.9 Gfa-like protein compare
Pf6N2E2_3252 -2.9 -6.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3072 -2.9 -7.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_4399 -2.8 -6.0 GGDEF domain/EAL domain protein compare
Pf6N2E2_4353 -2.8 -4.4 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_1189 -2.7 -5.2 Thioredoxin reductase (EC 1.8.1.9) compare
Pf6N2E2_4810 -2.7 -5.9 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_4047 -2.7 -5.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4153 -2.7 -1.6 Sensory box histidine kinase compare
Pf6N2E2_1188 -2.7 -2.6 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_5219 -2.7 -7.5 FIG140336: TPR domain protein compare
Pf6N2E2_4453 -2.7 -13.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5520 -2.7 -4.4 Sensory box histidine kinase compare
Pf6N2E2_2267 -2.6 -3.8 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_2281 -2.6 -2.0 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_4277 -2.6 -8.7 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3677 -2.6 -10.5 Sensory box/GGDEF family protein compare
Pf6N2E2_4759 -2.6 -11.3 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5583 -2.5 -5.0 Bacterioferritin compare
Pf6N2E2_525 -2.5 -5.0 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2574 -2.5 -1.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_4416 -2.5 -1.7 Tyrosine recombinase XerC compare
Pf6N2E2_4710 -2.5 -1.8 hypothetical protein compare
Pf6N2E2_2933 -2.5 -2.6 hypothetical protein compare
Pf6N2E2_4479 -2.5 -1.8 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_4077 -2.5 -1.6 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_66 -2.5 -6.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3610 -2.5 -3.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3841 -2.5 -4.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_1141 -2.4 -2.7 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_4121 -2.4 -3.0 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_3260 -2.4 -2.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3807 -2.4 -3.6 Histidine utilization repressor compare
Pf6N2E2_4187 -2.4 -2.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5902 -2.3 -1.5 hypothetical protein compare
Pf6N2E2_3875 -2.3 -1.1 FIG00953324: hypothetical protein compare
Pf6N2E2_2218 -2.3 -3.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5500 -2.3 -2.9 MoxR-like ATPases compare
Pf6N2E2_5527 -2.3 -1.6 Cold shock protein CspC compare
Pf6N2E2_2473 -2.3 -1.1 Major outer membrane lipoprotein I compare
Pf6N2E2_5579 -2.3 -7.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4763 -2.3 -7.7 Biotin synthesis protein BioC compare
Pf6N2E2_3763 -2.2 -2.1 hypothetical protein compare
Pf6N2E2_2496 -2.2 -1.3 FIG00956575: hypothetical protein compare
Pf6N2E2_3170 -2.2 -7.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2885 -2.2 -3.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5555 -2.2 -1.1 Cold shock protein CspA compare
Pf6N2E2_4360 -2.2 -7.7 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_2200 -2.2 -1.0 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_5669 -2.2 -5.6 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_4754 -2.1 -9.7 Protein rarD compare
Pf6N2E2_3554 -2.1 -6.5 GCN5-related N-acetyltransferase compare
Pf6N2E2_3589 -2.1 -1.5 Lysine decarboxylase family compare
Pf6N2E2_2083 -2.1 -2.7 hypothetical protein compare
Pf6N2E2_629 -2.1 -3.1 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_4394 -2.1 -5.6 Putrescine utilization regulator compare
Pf6N2E2_4516 -2.1 -7.4 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) compare
Pf6N2E2_2286 -2.1 -2.1 FIG00953287: hypothetical protein compare
Pf6N2E2_802 -2.1 -7.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_1124 -2.1 -2.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2261 -2.1 -3.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_2219 -2.0 -1.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3947 -2.0 -1.6 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_2938 -2.0 -3.6 Outer membrane lipoprotein compare
Pf6N2E2_1089 -2.0 -1.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1584 -2.0 -2.6 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_4146 -2.0 -1.7 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_3027 -2.0 -1.0 Baseplate assembly protein V compare
Pf6N2E2_2692 -2.0 -3.8 RNA polymerase sigma factor RpoE compare
Pf6N2E2_2081 -2.0 -2.0 putative exported protein compare
Pf6N2E2_122 -2.0 -1.5 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_463 -2.0 -4.3 Transcriptional regulatory protein RstA compare
Pf6N2E2_2384 -2.0 -3.4 CmpX compare
Pf6N2E2_3349 -2.0 -2.6 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_425 -2.0 -3.4 FIG00957304: hypothetical protein compare
Pf6N2E2_4838 -1.9 -7.5 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_4548 -1.9 -1.8 hypothetical protein compare
Pf6N2E2_2674 -1.9 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_1611 -1.9 -4.3 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_5144 -1.9 -2.7 Osmotically inducible protein OsmY compare
Pf6N2E2_3561 -1.9 -1.8 Phosphate starvation-inducible protein psiF precursor compare
Pf6N2E2_537 -1.9 -4.4 Na(+) H(+) antiporter subunit C compare
Pf6N2E2_4631 -1.9 -6.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_2753 -1.9 -1.8 HtrA protease/chaperone protein compare
Pf6N2E2_4638 -1.9 -1.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3284 -1.9 -4.4 Septum formation protein Maf compare
Pf6N2E2_3885 -1.8 -1.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_2442 -1.8 -7.5 sensor histidine kinase/response regulator compare
Pf6N2E2_3257 -1.8 -1.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4809 -1.8 -8.6 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_2601 -1.8 -4.2 Flagellin protein FlaG compare
Pf6N2E2_3132 -1.8 -3.0 FIG00954548: hypothetical protein compare
Pf6N2E2_3258 -1.8 -2.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2845 -1.8 -6.1 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_3251 -1.8 -5.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3553 -1.8 -3.0 Urease (EC 3.5.1.5) (from data) compare
Pf6N2E2_3595 -1.8 -3.4 Large protein containing transglutaminase-like domain compare
Pf6N2E2_4761 -1.8 -5.3 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4412 -1.7 -5.9 Ammonium transporter conserved
Pf6N2E2_1293 -1.7 -2.2 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_2666 -1.7 -3.8 hypothetical protein compare
Pf6N2E2_3942 -1.7 -5.9 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3659 -1.7 -4.2 Protein fixF compare
Pf6N2E2_3270 -1.7 -2.3 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4732 -1.7 -2.0 hypothetical protein compare
Pf6N2E2_3499 -1.7 -2.4 Permeases of the major facilitator superfamily compare
Pf6N2E2_2810 -1.7 -2.3 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf6N2E2_649 -1.7 -1.7 General secretion pathway protein L compare
Pf6N2E2_3373 -1.6 -1.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4513 -1.6 -6.4 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf6N2E2_2487 -1.6 -0.8 FIG00956090: hypothetical protein compare
Pf6N2E2_5677 -1.6 -0.8 Carbon storage regulator compare
Pf6N2E2_3840 -1.6 -2.9 FIG00956267: hypothetical protein compare
Pf6N2E2_4050 -1.6 -1.7 FIG00953718: hypothetical protein compare
Pf6N2E2_3938 -1.6 -7.5 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_6045 -1.6 -1.1 hypothetical protein compare
Pf6N2E2_4636 -1.6 -4.3 periplasmic binding protein, putative compare
Pf6N2E2_3480 -1.6 -1.2 Transcriptional regulator, ArsR family compare
Pf6N2E2_5667 -1.6 -5.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2967 -1.6 -1.6 Cold shock protein CspA compare
Pf6N2E2_4751 -1.6 -2.4 response regulator compare
Pf6N2E2_2103 -1.6 -2.3 hypothetical protein compare
Pf6N2E2_5346 -1.6 -2.3 rRNA small subunit methyltransferase I compare
Pf6N2E2_4417 -1.6 -3.2 Protein of unknown function DUF484 compare
Pf6N2E2_1220 -1.5 -2.2 hypothetical protein compare
Pf6N2E2_3525 -1.5 -3.5 membrane protein, MarC family compare
Pf6N2E2_2749 -1.5 -3.4 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
Pf6N2E2_4640 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_5950 -1.5 -2.4 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2074 -1.5 -1.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2862 -1.5 -5.6 Uncharacterized PLP-dependent aminotransferase YfdZ compare
Pf6N2E2_2007 -1.5 -3.5 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_4742 -1.5 -2.0 Glutathione S-transferase family protein compare
Pf6N2E2_1116 -1.5 -1.3 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_1652 -1.5 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_1577 -1.5 -3.0 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_5030 -1.5 -4.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_5666 -1.5 -5.4 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare


Specific Phenotypes

For 46 genes in this experiment

For nitrogen source L-Serine in Pseudomonas fluorescens FW300-N2E2

For nitrogen source L-Serine across organisms