Experiment set8IT005 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2011.1 -5.9 -4.0 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.622.1 -4.2 -6.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.4481.1 -4.1 -8.4 hypothetical protein compare
Xcc-8004.2387.1 -4.1 -2.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.4620.1 -3.6 -11.1 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.957.1 -3.3 -6.5 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.2012.1 -3.2 -9.4 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.4112.1 -3.1 -6.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.3281.1 -3.0 -8.4 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.3324.1 -3.0 -5.5 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.4398.1 -3.0 -8.2 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.4503.1 -2.8 -6.4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.601.1 -2.8 -8.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4073.1 -2.8 -12.0 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.1676.1 -2.7 -9.1 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.4439.1 -2.6 -13.0 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.1053.1 -2.5 -7.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.1967.1 -2.5 -9.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.1891.1 -2.4 -3.9 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.1437.1 -2.4 -7.5 Kup system potassium uptake protein compare
Xcc-8004.4026.1 -2.4 -8.0 FIG01209666: hypothetical protein compare
Xcc-8004.3536.1 -2.4 -5.8 FIG01210913: hypothetical protein compare
Xcc-8004.1615.1 -2.3 -2.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.3395.1 -2.3 -2.9 Transcriptional regulator, GntR family compare
Xcc-8004.5020.1 -2.3 -4.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.130.1 -2.2 -8.0 hypothetical protein compare
Xcc-8004.2711.1 -2.2 -1.2 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.4510.1 -2.1 -2.5 ATP binding component of ABC-transporter compare
Xcc-8004.3049.1 -2.1 -9.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.657.1 -2.1 -7.7 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.271.1 -2.1 -3.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.3230.1 -2.0 -3.3 Phage DNA invertase compare
Xcc-8004.4025.1 -2.0 -10.2 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.4507.1 -2.0 -5.0 Glycosyltransferase compare
Xcc-8004.1964.1 -1.9 -10.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.3855.1 -1.9 -7.8 FIG01209965: hypothetical protein compare
Xcc-8004.1049.1 -1.9 -5.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.4514.1 -1.9 -11.5 Glycosyltransferase compare
Xcc-8004.1955.1 -1.9 -5.1 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.618.1 -1.8 -3.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.1205.1 -1.8 -2.8 hypothetical protein compare
Xcc-8004.2921.1 -1.8 -3.5 ferrous iron transport protein compare
Xcc-8004.4596.1 -1.8 -7.2 hypothetical protein compare
Xcc-8004.2319.1 -1.8 -4.4 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.621.1 -1.7 -3.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.659.1 -1.7 -3.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2266.1 -1.7 -2.5 FIG01211351: hypothetical protein compare
Xcc-8004.1010.1 -1.7 -4.7 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.3282.1 -1.6 -6.5 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.2081.1 -1.6 -4.1 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.4062.1 -1.6 -8.2 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Xcc-8004.1060.1 -1.6 -6.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.3322.1 -1.6 -1.4 FIG01211446: hypothetical protein compare
Xcc-8004.1059.1 -1.6 -6.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.1616.1 -1.6 -1.2 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.2323.1 -1.6 -6.0 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.3346.1 -1.6 -3.1 hypothetical protein compare
Xcc-8004.1359.1 -1.6 -5.0 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3792.1 -1.5 -2.1 Mobile element protein compare
Xcc-8004.3283.1 -1.5 -7.7 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.608.1 -1.5 -5.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.2922.1 -1.5 -2.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.3361.1 -1.5 -5.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Xcc-8004.4739.1 -1.5 -4.1 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.451.1 -1.5 -3.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.2346.1 -1.5 -2.5 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.44.1 -1.5 -12.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.1727.1 -1.4 -2.2 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.2946.1 -1.4 -3.5 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.2322.1 -1.4 -5.2 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.2316.1 -1.4 -7.8 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.4170.1 -1.4 -1.6 LSU ribosomal protein L25p compare
Xcc-8004.2958.1 -1.4 -2.8 tryptophan-rich sensory protein compare
Xcc-8004.4473.1 -1.4 -9.0 FIG01212400: hypothetical protein compare
Xcc-8004.1058.1 -1.3 -2.1 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.337.1 -1.3 -2.5 ATPase, AFG1 family compare
Xcc-8004.1962.1 -1.3 -2.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.4738.1 -1.3 -7.0 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.2385.1 -1.3 -6.5 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.585.1 -1.3 -2.2 Na(+) H(+) antiporter subunit F compare
Xcc-8004.2412.1 -1.3 -8.2 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.2386.1 -1.3 -8.1 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.2217.1 -1.3 -3.6 FIG01209779: hypothetical protein compare
Xcc-8004.1050.1 -1.3 -2.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.2320.1 -1.3 -4.8 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.2977.1 -1.3 -9.7 hypothetical protein compare
Xcc-8004.4737.1 -1.3 -4.1 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.3676.1 -1.3 -2.8 Translation elongation factor LepA compare
Xcc-8004.4480.1 -1.2 -6.5 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.4485.1 -1.2 -5.6 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.3303.1 -1.2 -3.5 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Xcc-8004.401.1 -1.2 -2.5 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.1158.1 -1.2 -2.6 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Xcc-8004.43.1 -1.2 -5.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.4506.1 -1.2 -5.4 membrane protein WxcD compare
Xcc-8004.4824.1 -1.2 -6.6 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.577.1 -1.1 -4.7 Transcriptional regulator, MarR family compare
Xcc-8004.846.1 -1.1 -2.4 Protein of unknown function DUF484 compare
Xcc-8004.4264.1 -1.1 -2.6 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.1056.1 -1.1 -2.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.2931.1 -1.1 -2.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.3363.1 -1.1 -3.9 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Xcc-8004.3728.1 -1.1 -1.3 hypothetical protein compare
Xcc-8004.2384.1 -1.1 -6.5 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.4486.1 -1.1 -7.1 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.2079.1 -1.1 -2.1 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.1372.1 -1.1 -2.8 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4374.1 -1.1 -2.1 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Xcc-8004.1763.1 -1.1 -2.6 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.4046.1 -1.1 -5.9 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1028.1 -1.1 -4.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.2421.1 -1.1 -7.3 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.4441.1 -1.0 -2.6 Tyrosine recombinase XerD compare
Xcc-8004.1208.1 -1.0 -3.0 Glucarate dehydratase (EC 4.2.1.40) compare
Xcc-8004.3954.1 -1.0 -3.0 HflC protein compare
Xcc-8004.1491.1 -1.0 -7.0 Glycosyltransferase compare
Xcc-8004.3632.1 -1.0 -1.9 FIG01209689: hypothetical protein compare
Xcc-8004.1057.1 -1.0 -6.2 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.3674.1 -1.0 -2.0 FIG01209931: hypothetical protein compare
Xcc-8004.2674.1 -1.0 -3.9 hydroxylase compare
Xcc-8004.2318.1 -1.0 -3.1 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.1761.1 -1.0 -3.7 Pirin-related protein compare
Xcc-8004.2561.1 -1.0 -4.7 FIG01213638: hypothetical protein compare
Xcc-8004.4499.1 -1.0 -2.0 Mobile element protein compare
Xcc-8004.645.1 -1.0 -1.1 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.2954.1 -1.0 -6.5 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.2420.1 -1.0 -4.9 PHA synthase subunit compare
Xcc-8004.2944.1 -1.0 -4.1 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.3862.1 -1.0 -3.3 Septum site-determining protein MinC compare
Xcc-8004.1811.1 -1.0 -2.4 extracellular serine protease compare
Xcc-8004.288.1 -0.9 -1.7 Ferredoxin compare
Xcc-8004.3362.1 -0.9 -2.8 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Xcc-8004.1117.1 -0.9 -2.3 hypothetical protein compare
Xcc-8004.5343.1 -0.9 -3.8 hypothetical protein compare
Xcc-8004.3537.1 -0.9 -3.6 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.3803.1 -0.9 -1.9 hypothetical protein compare
Xcc-8004.5189.1 -0.9 -1.8 FIG01212821: hypothetical protein compare
Xcc-8004.1196.1 -0.9 -3.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.3394.1 -0.9 -2.1 hypothetical protein compare
Xcc-8004.2920.1 -0.9 -4.0 Ferrous iron transport protein B compare
Xcc-8004.5252.1 -0.9 -3.7 FIG01210658: hypothetical protein compare
Xcc-8004.2260.1 -0.9 -3.6 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.4605.1 -0.9 -1.8 FIG001943: hypothetical protein YajQ compare
Xcc-8004.2505.1 -0.9 -6.4 FIG01212099: hypothetical protein compare
Xcc-8004.1236.1 -0.9 -3.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.5021.1 -0.9 -1.5 FIG01211474: hypothetical protein compare
Xcc-8004.956.1 -0.9 -4.4 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) compare
Xcc-8004.3816.1 -0.9 -3.7 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.323.1 -0.9 -2.0 FIG01210738: hypothetical protein compare
Xcc-8004.4948.1 -0.9 -1.7 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.4391.1 -0.9 -1.8 hypothetical protein compare
Xcc-8004.1677.1 -0.9 -1.9 FIG01209993: hypothetical protein compare
Xcc-8004.4976.1 -0.9 -6.1 hypothetical protein compare
Xcc-8004.3433.1 -0.9 -3.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.589.1 -0.9 -1.2 hypothetical protein compare
Xcc-8004.1841.1 -0.8 -1.5 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.195.1 -0.8 -1.3 phosphoesterase, putative compare
Xcc-8004.4248.1 -0.8 -2.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.4270.1 -0.8 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
Xcc-8004.740.1 -0.8 -2.6 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.3661.1 -0.8 -2.9 5'-methylthioadenosine phosphorylase (EC 2.4.2.28) compare
Xcc-8004.1085.1 -0.8 -1.5 FIG01212308: hypothetical protein compare
Xcc-8004.1511.1 -0.8 -1.7 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.3898.1 -0.8 -1.0 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.2795.1 -0.8 -2.3 FIG01211616: hypothetical protein compare
Xcc-8004.2618.1 -0.8 -1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Xcc-8004.4225.1 -0.8 -1.4 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.4429.1 -0.8 -1.5 General secretion pathway protein H compare
Xcc-8004.3129.1 -0.8 -2.8 FIG139438: lipoprotein B compare
Xcc-8004.402.1 -0.8 -2.4 FIG01209770: hypothetical protein compare
Xcc-8004.4836.1 -0.8 -3.1 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.2335.1 -0.8 -3.0 Transport ATP-binding protein CydC compare
Xcc-8004.2475.1 -0.8 -2.8 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Xcc-8004.2673.1 -0.8 -1.9 FIG01211365: hypothetical protein compare
Xcc-8004.4403.1 -0.8 -1.4 Arsenate reductase (EC 1.20.4.1) compare
Xcc-8004.1023.1 -0.8 -2.8 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.3834.1 -0.8 -2.1 Pathogenicity-related protein compare
Xcc-8004.4752.1 -0.8 -1.4 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.5302.1 -0.8 -1.9 FIG039767: hypothetical protein compare
Xcc-8004.4493.1 -0.8 -1.9 sugar translocase compare
Xcc-8004.4427.1 -0.8 -1.4 General secretion pathway protein J compare
Xcc-8004.5253.1 -0.8 -1.0 hypothetical protein compare
Xcc-8004.2929.1 -0.7 -2.3 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.1961.1 -0.7 -1.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.1138.1 -0.7 -2.3 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.259.1 -0.7 -3.4 FIG01209938: hypothetical protein compare
Xcc-8004.5224.1 -0.7 -1.4 bleomycin resistance protein compare
Xcc-8004.1651.1 -0.7 -3.3 putative Cytochrome bd2, subunit I compare
Xcc-8004.1680.1 -0.7 -4.3 FIG006611: nucleotidyltransferase compare
Xcc-8004.1436.1 -0.7 -1.2 Holliday junction DNA helicase RuvA compare
Xcc-8004.4672.1 -0.7 -1.7 hypothetical protein compare
Xcc-8004.3459.1 -0.7 -1.2 FIG01212836: hypothetical protein compare
Xcc-8004.2215.1 -0.7 -0.8 hypothetical protein compare
Xcc-8004.826.1 -0.7 -4.8 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Xcc-8004.4039.1 -0.7 -1.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.4508.1 -0.7 -2.2 Kinase compare
Xcc-8004.3955.1 -0.7 -3.0 HflK protein compare
Xcc-8004.3663.1 -0.7 -2.2 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.2754.1 -0.7 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.2570.1 -0.7 -2.9 Integrase regulator R compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in in planta mesophyll experiments

For in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days across organisms