Experiment set8IT005 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 10mM L-Threonine

200 most important genes:

  gene name fitness t score description  
MMP_RS07345 -4.0 -8.1 glycine synthesis protein GlyXL (from data) compare
MMP_RS02900 -3.7 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05920 -3.6 -0.6 50S ribosomal protein L37e compare
MMP_RS02605 -3.6 -1.0 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS01545 -3.5 -1.1 CBS domain-containing protein compare
MMP_RS06355 -3.4 -2.9 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03015 -3.4 -9.3 GTP 3' 8-cyclase MoaA compare
MMP_RS02245 -3.3 -3.2 hypothetical protein compare
MMP_RS06350 -3.3 -8.1 HesA/MoeB/ThiF family protein compare
MMP_RS01980 -3.1 -14.1 trimeric intracellular cation channel family protein compare
MMP_RS06370 -3.0 -5.0 biotin synthase BioB compare
MMP_RS03960 -2.9 -1.1 hypothetical protein compare
MMP_RS01175 -2.9 -5.5 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07365 -2.9 -14.2 2-phosphoglycerate kinase compare
MMP_RS07635 -2.8 -8.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07630 -2.8 -1.5 ATP-binding cassette domain-containing protein compare
MMP_RS08100 -2.7 -6.4 8-amino-7-oxononanoate synthase compare
MMP_RS04500 -2.7 -14.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS05515 -2.7 -8.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS08745 -2.7 -7.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01830 -2.7 -1.5 tRNA-Val compare
MMP_RS04605 -2.7 -3.9 cobalt ECF transporter T component CbiQ compare
MMP_RS07600 -2.6 -2.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07845 -2.6 -2.6 LL-diaminopimelate aminotransferase compare
MMP_RS06685 -2.6 -14.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07005 -2.6 -0.6 4Fe-4S binding protein compare
MMP_RS02170 -2.5 -5.3 CBS domain-containing protein compare
MMP_RS04710 -2.5 -1.8 hypothetical protein compare
MMP_RS02280 -2.5 -0.9 DUF211 domain-containing protein compare
MMP_RS07645 -2.5 -5.3 aldehyde dehydrogenase family protein compare
MMP_RS08105 -2.5 -5.9 6-carboxyhexanoate--CoA ligase compare
MMP_RS03640 -2.5 -3.6 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06715 -2.4 -13.4 cache domain-containing protein compare
MMP_RS06705 -2.4 -6.2 formate/nitrite transporter family protein compare
MMP_RS06680 -2.4 -13.4 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06700 -2.4 -14.0 hypothetical protein compare
MMP_RS06720 -2.4 -7.6 response regulator transcription factor compare
MMP_RS00695 -2.4 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS03475 -2.3 -0.7 hypothetical protein compare
MMP_RS05500 -2.3 -8.2 2-isopropylmalate synthase compare
MMP_RS04215 -2.3 -7.6 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06345 -2.3 -10.4 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS01365 -2.3 -3.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS00300 -2.3 -0.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01985 -2.3 -6.5 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS03305 -2.2 -6.6 winged helix-turn-helix domain-containing protein compare
MMP_RS05280 -2.2 -8.4 COG1361 S-layer family protein compare
MMP_RS01385 -2.2 -0.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07335 -2.2 -5.3 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMP_RS00985 -2.2 -5.1 CDC48 family AAA ATPase compare
MMP_RS00915 -2.2 -5.7 DUF116 domain-containing protein compare
MMP_RS01455 -2.1 -8.4 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS02355 -2.1 -2.9 30S ribosomal protein S27ae compare
MMP_RS05765 -2.1 -6.1 M42 family metallopeptidase compare
MMP_RS04780 -2.1 -2.7 ribonuclease P compare
MMP_RS04870 -2.0 -4.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS05555 -2.0 -1.2 DUF4040 domain-containing protein compare
MMP_RS04620 -2.0 -10.5 cobalt transporter CbiM compare
MMP_RS02800 -2.0 -5.1 nucleotidyltransferase domain-containing protein compare
MMP_RS07525 -2.0 -8.6 4Fe-4S binding protein compare
MMP_RS06375 -2.0 -5.6 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS08240 -2.0 -4.9 methanogenesis marker 16 metalloprotein compare
MMP_RS01020 -2.0 -1.0 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS07195 -2.0 -6.8 M20 family metallo-hydrolase compare
MMP_RS06200 -2.0 -8.2 M24 family metallopeptidase compare
MMP_RS05060 -1.9 -8.9 AAA family ATPase compare
MMP_RS07735 -1.9 -0.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08645 -1.9 -6.3 UPF0179 family protein compare
MMP_RS06625 -1.9 -2.0 DNA primase compare
MMP_RS07380 -1.9 -1.7 transcription elongation factor Spt5 compare
MMP_RS07185 -1.9 -9.9 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS02165 -1.9 -5.6 tRNA-dihydrouridine synthase compare
MMP_RS07555 -1.8 -0.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS08095 -1.8 -5.7 dethiobiotin synthase compare
MMP_RS00685 -1.8 -3.8 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06270 -1.8 -4.4 TIGR00300 family protein compare
MMP_RS05265 -1.8 -1.4 2-isopropylmalate synthase compare
MMP_RS08790 -1.8 -2.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS04900 -1.8 -11.6 hypothetical protein compare
MMP_RS07445 -1.8 -6.3 helix-turn-helix domain-containing protein compare
MMP_RS03485 -1.8 -3.4 TIGR00267 family protein compare
MMP_RS07730 -1.8 -1.5 pyruvate synthase subunit beta compare
MMP_RS01265 -1.8 -2.5 hypothetical protein compare
MMP_RS09055 -1.7 -1.0 CAP domain-containing protein compare
MMP_RS05430 -1.7 -6.3 TIGR00288 family NYN domain-containing protein compare
MMP_RS04615 -1.7 -3.1 PDGLE domain-containing protein compare
MMP_RS05425 -1.7 -4.6 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01500 -1.7 -2.4 CBS domain-containing protein compare
MMP_RS00040 -1.7 -4.6 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS05285 -1.7 -5.4 MMPL family transporter compare
MMP_RS03450 -1.7 -1.9 glycine synthesis protein GlyXS (from data) compare
MMP_RS05070 -1.7 -5.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS05095 -1.6 -5.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS08195 -1.6 -7.3 hypothetical protein compare
MMP_RS01755 -1.6 -1.2 DUF2097 domain-containing protein compare
MMP_RS01600 -1.6 -2.9 50S ribosomal protein L15e compare
MMP_RS01220 -1.6 -5.1 hypothetical protein compare
MMP_RS02805 -1.6 -1.2 HEPN domain-containing protein compare
MMP_RS00515 -1.6 -0.8 DUF655 domain-containing protein compare
MMP_RS05925 -1.6 -2.9 small nuclear ribonucleoprotein compare
MMP_RS03435 -1.6 -1.3 ketol-acid reductoisomerase compare
MMP_RS00810 -1.6 -5.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03035 -1.6 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05100 -1.5 -10.8 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS07605 -1.5 -2.4 diadenylate cyclase compare
MMP_RS08165 -1.5 -1.2 phosphoglycerate dehydrogenase compare
MMP_RS05090 -1.5 -7.1 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS03600 -1.5 -1.6 triose-phosphate isomerase compare
MMP_RS06295 -1.5 -3.8 methanogenesis marker 14 protein compare
MMP_RS02235 -1.5 -5.1 CBS domain-containing protein compare
MMP_RS06105 -1.5 -5.5 hydrogenase maturation peptidase HycI compare
MMP_RS01005 -1.5 -1.1 riboflavin synthase compare
MMP_RS05460 -1.5 -7.4 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS08720 -1.5 -1.2 4Fe-4S binding protein compare
MMP_RS05075 -1.5 -9.3 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS00455 -1.4 -4.4 orotate phosphoribosyltransferase-like protein compare
MMP_RS08330 -1.4 -4.1 NADH-quinone oxidoreductase subunit H compare
MMP_RS02175 -1.4 -0.6 DUF1611 domain-containing protein compare
MMP_RS02340 -1.4 -1.2 DNA-directed RNA polymerase subunit E'' compare
MMP_RS00620 -1.4 -5.2 4Fe-4S binding protein compare
MMP_RS05085 -1.4 -7.2 AAA family ATPase compare
MMP_RS01085 -1.4 -1.4 hypothetical protein compare
MMP_RS03315 -1.4 -0.8 ferrous iron transport protein A compare
MMP_RS05930 -1.4 -1.5 3-isopropylmalate dehydratase large subunit compare
MMP_RS00295 -1.4 -1.5 gamma carbonic anhydrase family protein compare
MMP_RS05055 -1.4 -7.7 DUF166 domain-containing protein compare
MMP_RS05080 -1.4 -7.0 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS04015 -1.4 -2.3 hypothetical protein compare
MMP_RS08445 -1.4 -2.3 DUF2099 family protein compare
MMP_RS06175 -1.3 -5.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS07535 -1.3 -5.0 4Fe-4S binding protein compare
MMP_RS07710 -1.3 -5.5 cell division protein FtsZ compare
MMP_RS03755 -1.3 -6.2 MarR family transcriptional regulator compare
MMP_RS06710 -1.3 -3.4 selenium-binding protein compare
MMP_RS00895 -1.3 -2.2 hypothetical protein compare
MMP_RS01610 -1.3 -2.0 hypothetical protein compare
MMP_RS03590 -1.3 -3.2 METTL5 family protein compare
MMP_RS01195 -1.3 -0.9 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01890 -1.3 -3.3 nucleotide sugar dehydrogenase compare
MMP_RS00555 -1.2 -3.2 MFS transporter compare
MMP_RS06285 -1.2 -1.8 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS00110 -1.2 -2.0 hypothetical protein compare
MMP_RS03465 -1.2 -0.9 adenine phosphoribosyltransferase compare
MMP_RS07720 -1.2 -6.3 4Fe-4S binding protein compare
MMP_RS00290 -1.2 -3.2 hypothetical protein compare
MMP_RS08370 -1.2 -0.5 cation:proton antiporter subunit C compare
MMP_RS04775 -1.2 -1.8 adenosylhomocysteinase compare
MMP_RS05065 -1.2 -2.6 CooT family nickel-binding protein compare
MMP_RS08600 -1.2 -1.8 flagellar protein D compare
MMP_RS06885 -1.1 -1.4 50S ribosome-binding GTPase compare
MMP_RS07685 -1.1 -5.1 TIGR01212 family radical SAM protein compare
MMP_RS00320 -1.1 -1.2 class I SAM-dependent methyltransferase compare
MMP_RS05545 -1.1 -3.0 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04585 -1.1 -6.0 AIR synthase related protein compare
MMP_RS04145 -1.1 -1.0 hypothetical protein compare
MMP_RS05290 -1.1 -5.6 TetR/AcrR family transcriptional regulator compare
MMP_RS08615 -1.1 -1.1 flagellar protein G compare
MMP_RS08200 -1.0 -5.8 archaeosine synthase subunit alpha compare
MMP_RS00345 -1.0 -1.6 DUF2666 domain-containing protein compare
MMP_RS08320 -1.0 -2.5 molybdopterin molybdotransferase MoeA compare
MMP_RS05550 -1.0 -0.3 cation:proton antiporter compare
MMP_RS01700 -1.0 -0.5 dihydroxy-acid dehydratase compare
MMP_RS04890 -1.0 -0.5 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08000 -1.0 -5.0 methyl coenzyme M reductase-arginine methyltransferase Mmp10 compare
MMP_RS04125 -1.0 -1.9 TetR/AcrR family transcriptional regulator compare
MMP_RS08725 -1.0 -1.2 Ni/Fe hydrogenase subunit alpha compare
MMP_RS08460 -1.0 -1.2 proteasome-activating nucleotidase compare
MMP_RS08435 -0.9 -1.1 Era-like GTP-binding protein compare
MMP_RS06865 -0.9 -1.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS01380 -0.9 -2.5 PHP domain-containing protein compare
MMP_RS05540 -0.9 -1.7 hypothetical protein compare
MMP_RS08580 -0.9 -1.8 flagellin compare
MMP_RS08290 -0.9 -3.6 DNA-binding protein Alba compare
MMP_RS05415 -0.9 -2.5 DUF22 domain-containing protein compare
MMP_RS08715 -0.9 -0.9 formylmethanofuran dehydrogenase subunit B compare
MMP_RS00235 -0.9 -4.0 HDIG domain-containing protein compare
MMP_RS06915 -0.9 -2.7 metallophosphoesterase compare
MMP_RS05865 -0.9 -1.3 hypothetical protein compare
MMP_RS07530 -0.9 -4.7 4Fe-4S binding protein compare
MMP_RS01800 -0.8 -2.0 TIGR00303 family protein compare
MMP_RS04875 -0.8 -2.1 energy-converting hydrogenase B subunit P compare
MMP_RS04420 -0.8 -1.7 LysE family translocator compare
MMP_RS03025 -0.8 -1.6 molybdenum cofactor guanylyltransferase compare
MMP_RS04670 -0.8 -3.7 selenouridine synthase SelU-like subunit compare
MMP_RS08365 -0.8 -2.1 energy conserving hydrogenase EhbF compare
MMP_RS08535 -0.8 -3.0 bis-aminopropyl spermidine synthase family protein compare
MMP_RS01495 -0.8 -2.8 TraB/GumN family protein compare
MMP_RS01260 -0.8 -1.2 HDIG domain-containing protein compare
MMP_RS07615 -0.8 -2.0 energy-coupling factor ABC transporter permease compare
MMP_RS08635 -0.8 -0.9 UbiA family prenyltransferase compare
MMP_RS08350 -0.8 -0.5 hypothetical protein compare
MMP_RS01675 -0.8 -0.8 hypothetical protein compare
MMP_RS05875 -0.8 -2.2 hydroxyethylthiazole kinase compare
MMP_RS08995 -0.8 -0.7 hypothetical protein compare
MMP_RS00965 -0.8 -1.0 hypothetical protein compare
MMP_RS05315 -0.8 -1.0 hypothetical protein compare
MMP_RS01790 -0.8 -2.1 restriction endonuclease compare
MMP_RS01225 -0.8 -2.3 DUF5379 domain-containing protein compare
MMP_RS01330 -0.8 -3.3 DHH family phosphoesterase compare
MMP_RS04050 -0.8 -1.6 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For nutrient t1 L-Threonine in Methanococcus maripaludis S2

For nutrient t1 L-Threonine across organisms