Experiment set8H38 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Carbenicillin disodium salt 0.02 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0952 -5.8 -3.3 Uncharacterized conserved protein compare
Psest_1498 -5.8 -2.8 tol-pal system-associated acyl-CoA thioesterase compare
Psest_3226 -5.3 -1.1 Predicted membrane protein compare
Psest_1366 -5.2 -1.9 hypothetical protein compare
Psest_1473 -4.6 -8.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3890 -4.1 -1.5 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0259 -4.1 -1.2 cell division ATP-binding protein FtsE compare
Psest_0309 -4.0 -1.5 RND family efflux transporter, MFP subunit compare
Psest_3039 -4.0 -1.9 periplasmic nitrate reductase, NapE protein compare
Psest_0260 -3.9 -1.7 Cell division protein compare
Psest_0310 -3.8 -2.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0725 -3.8 -2.1 Negative regulator of beta-lactamase expression compare
Psest_1870 -3.7 -1.1 Transcriptional regulators compare
Psest_0954 -3.6 -5.8 Fe-S oxidoreductase compare
Psest_4243 -3.4 -2.0 type VI secretion lipoprotein, VC_A0113 family compare
Psest_2579 -3.4 -4.1 amidophosphoribosyltransferase compare
Psest_3476 -3.3 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3700 -3.1 -0.7 hypothetical protein compare
Psest_0953 -3.1 -8.1 iron-sulfur cluster-binding protein compare
Psest_0687 -3.1 -7.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_4201 -3.0 -2.2 general secretion pathway protein F compare
Psest_2104 -2.9 -2.0 IscR-regulated protein YhgI compare
Psest_1176 -2.9 -3.5 Urea transporter compare
Psest_2945 -2.8 -1.3 septum site-determining protein MinC compare
Psest_0537 -2.8 -1.6 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_1179 -2.8 -1.4 2-hydroxy-3-oxopropionate reductase compare
Psest_3322 -2.7 -13.0 TIGR02099 family protein compare
Psest_1306 -2.7 -1.8 hypothetical protein compare
Psest_2872 -2.7 -1.4 protein RecA compare
Psest_1510 -2.7 -5.5 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1679 -2.7 -1.6 ribonuclease, Rne/Rng family compare
Psest_1282 -2.7 -1.2 Amidases related to nicotinamidase compare
Psest_3866 -2.6 -11.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0152 -2.6 -5.0 Imidazoleglycerol-phosphate dehydratase compare
Psest_4298 -2.6 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3894 -2.6 -4.0 Carbon starvation protein, predicted membrane protein compare
Psest_3565 -2.6 -1.3 hypothetical protein compare
Psest_2358 -2.5 -1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3299 -2.5 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3913 -2.5 -3.0 hypothetical protein compare
Psest_0225 -2.4 -1.8 Predicted permease, DMT superfamily compare
Psest_1474 -2.4 -1.7 phosphoribosylaminoimidazole synthetase compare
Psest_0368 -2.4 -1.0 Transcriptional regulator compare
Psest_2153 -2.4 -2.9 formate dehydrogenase, gamma subunit compare
Psest_1295 -2.4 -6.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3777 -2.4 -2.5 diguanylate cyclase (GGDEF) domain compare
Psest_4128 -2.4 -1.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2304 -2.3 -1.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3159 -2.3 -6.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2370 -2.3 -2.4 Protein of unknown function (DUF1652). compare
Psest_4098 -2.3 -3.5 Superfamily I DNA and RNA helicases compare
Psest_3810 -2.3 -1.5 orotate phosphoribosyltransferase compare
Psest_2578 -2.2 -7.4 O-succinylhomoserine sulfhydrylase compare
Psest_1657 -2.2 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1424 -2.1 -2.0 Lipoate-protein ligase A compare
Psest_0279 -2.1 -4.4 methionine biosynthesis protein MetW compare
Psest_1012 -2.1 -4.5 Signal transduction histidine kinase compare
Psest_0508 -2.1 -5.5 gamma-glutamyl phosphate reductase compare
Psest_1506 -2.1 -4.2 queuosine biosynthesis protein QueC compare
Psest_1013 -2.1 -3.4 phosphoribosylamine--glycine ligase compare
Psest_1463 -2.1 -1.0 SufE protein probably involved in Fe-S center assembly compare
Psest_1452 -2.0 -7.5 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0489 -2.0 -2.0 phosphoserine phosphatase SerB compare
Psest_3943 -2.0 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3895 -2.0 -2.1 hypothetical protein compare
Psest_0266 -2.0 -3.6 thiamine biosynthesis protein ThiS compare
Psest_0161 -2.0 -1.7 Membrane-bound metallopeptidase compare
Psest_0718 -1.9 -2.8 nicotinate-nucleotide pyrophosphorylase compare
Psest_3391 -1.9 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3693 -1.9 -0.9 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3881 -1.9 -1.0 hypothetical protein compare
Psest_3042 -1.9 -1.2 Nitrate reductase cytochrome c-type subunit compare
Psest_1167 -1.9 -0.9 hypothetical protein compare
Psest_2067 -1.9 -1.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0311 -1.9 -4.2 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1509 -1.9 -3.9 quinolinate synthetase complex, A subunit compare
Psest_0155 -1.9 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2975 -1.8 -1.4 tRNA_Arg_CCT compare
Psest_1317 -1.8 -3.6 phosphonate ABC transporter, permease protein PhnE compare
Psest_3707 -1.8 -2.4 Transcriptional regulator compare
Psest_3944 -1.8 -1.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0407 -1.7 -2.9 Dioxygenases related to 2-nitropropane dioxygenase compare
Psest_4067 -1.7 -3.1 Predicted membrane protein compare
Psest_3231 -1.7 -1.3 hypothetical protein compare
Psest_4064 -1.7 -1.9 Lactate dehydrogenase and related dehydrogenases compare
Psest_0359 -1.7 -1.4 Transcriptional regulators compare
Psest_3650 -1.7 -7.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3247 -1.7 -1.1 Uncharacterized membrane protein compare
Psest_3816 -1.7 -0.8 DNA-directed RNA polymerase, omega subunit compare
Psest_3384 -1.6 -3.9 glutamate 5-kinase compare
Psest_2775 -1.6 -1.6 Glycerol-3-phosphate dehydrogenase compare
Psest_0411 -1.6 -4.5 biotin synthetase compare
Psest_0060 -1.6 -1.6 Predicted Fe-S protein compare
Psest_3573 -1.6 -2.1 dTDP-4-dehydrorhamnose reductase compare
Psest_3298 -1.6 -5.4 histidinol dehydrogenase compare
Psest_2001 -1.6 -0.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1837 -1.6 -4.5 Endoglucanase compare
Psest_1814 -1.6 -7.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2632 -1.6 -3.5 ribosomal protein S12 methylthiotransferase RimO compare
Psest_0355 -1.6 -1.5 Glycine cleavage system regulatory protein compare
Psest_3998 -1.5 -4.1 glutamate--cysteine ligase compare
Psest_1087 -1.5 -0.9 uncharacterized peroxidase-related enzyme compare
Psest_0267 -1.5 -4.8 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_0515 -1.5 -2.4 rare lipoprotein A compare
Psest_0313 -1.5 -3.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2630 -1.5 -1.7 hypothetical protein compare
Psest_0280 -1.5 -6.3 homoserine O-acetyltransferase compare
Psest_1724 -1.5 -1.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0153 -1.5 -5.4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_4307 -1.5 -2.3 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_1259 -1.5 -3.5 23S rRNA m2A2503 methyltransferase compare
Psest_2646 -1.4 -0.9 SOS regulatory protein LexA compare
Psest_1161 -1.4 -1.3 E3 Ubiquitin ligase. compare
Psest_1661 -1.4 -1.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1686 -1.4 -2.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2711 -1.4 -1.6 PilZ domain. compare
Psest_1660 -1.4 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3721 -1.4 -3.4 Malic enzyme compare
Psest_0035 -1.4 -2.8 hypothetical protein compare
Psest_0186 -1.4 -2.6 Protein-disulfide isomerase compare
Psest_0189 -1.4 -2.6 Negative regulator of beta-lactamase expression conserved
Psest_3297 -1.3 -4.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1636 -1.3 -2.8 putative transporter, required for glycine utilization (from data) compare
Psest_2280 -1.3 -2.7 Predicted membrane protein compare
Psest_1479 -1.3 -2.0 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_3047 -1.3 -0.8 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1656 -1.3 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1447 -1.3 -3.0 Putative threonine efflux protein compare
Psest_0440 -1.3 -2.5 hypothetical protein compare
Psest_0093 -1.3 -1.8 Uncharacterized enzyme of phosphonate metabolism compare
Psest_0951 -1.3 -4.5 FAD/FMN-containing dehydrogenases compare
Psest_1750 -1.3 -1.3 Protein of unknown function (DUF2802). compare
Psest_2899 -1.3 -0.9 hypothetical protein compare
Psest_0570 -1.3 -3.1 hypothetical protein compare
Psest_3395 -1.3 -0.7 hypothetical protein compare
Psest_2580 -1.3 -2.0 Uncharacterized membrane protein, required for colicin V production compare
Psest_3419 -1.3 -4.2 Predicted transcriptional regulators compare
Psest_0883 -1.3 -3.1 hypothetical protein compare
Psest_1496 -1.3 -0.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_0379 -1.3 -2.8 Galactose mutarotase and related enzymes compare
Psest_3884 -1.3 -0.5 Signal transduction histidine kinase compare
Psest_3323 -1.3 -2.7 ribonuclease, Rne/Rng family compare
Psest_1642 -1.3 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1692 -1.2 -3.8 conserved hypothetical protein, YceG family compare
Psest_2278 -1.2 -1.8 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3648 -1.2 -3.1 anthranilate phosphoribosyltransferase compare
Psest_2285 -1.2 -2.5 ATP-dependent protease La compare
Psest_4170 -1.2 -0.7 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1323 -1.2 -2.1 Hydroxypyruvate isomerase compare
Psest_3647 -1.2 -2.9 Indole-3-glycerol phosphate synthase compare
Psest_1313 -1.2 -1.0 Uncharacterized conserved small protein compare
Psest_0691 -1.2 -5.1 ribonuclease R compare
Psest_3177 -1.2 -1.1 hypothetical protein compare
Psest_2513 -1.2 -2.0 Predicted membrane protein compare
Psest_2539 -1.2 -1.9 adenine phosphoribosyltransferase compare
Psest_1318 -1.2 -2.3 ABC-type phosphate/phosphonate transport system, permease component compare
Psest_1242 -1.2 -1.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2718 -1.2 -0.7 hypothetical protein compare
Psest_2714 -1.2 -1.1 7-cyano-7-deazaguanine reductase compare
Psest_3850 -1.1 -0.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4145 -1.1 -1.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_3303 -1.1 -2.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4256 -1.1 -1.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2907 -1.1 -0.9 Protein of unknown function (DUF3618). compare
Psest_2448 -1.1 -1.8 AraC-type DNA-binding domain-containing proteins compare
Psest_2758 -1.1 -2.1 Predicted transcriptional regulators compare
Psest_0227 -1.1 -1.4 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_0514 -1.1 -3.7 lytic murein transglycosylase B compare
Psest_1695 -1.1 -1.7 Tfp pilus assembly protein PilZ compare
Psest_2766 -1.1 -0.6 hypothetical protein compare
Psest_0097 -1.1 -0.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0281 -1.1 -2.7 Dynamin family. compare
Psest_2545 -1.1 -1.8 recombination protein RecR compare
Psest_2435 -1.1 -1.7 Transcriptional regulator compare
Psest_3206 -1.1 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_0413 -1.1 -3.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1998 -1.1 -2.3 Entner-Doudoroff aldolase compare
Psest_3496 -1.1 -0.7 Predicted metal-binding protein compare
Psest_1947 -1.1 -0.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1732 -1.1 -1.8 flagellar biosynthetic protein FliP compare
Psest_0218 -1.1 -1.2 Acyl-CoA hydrolase compare
Psest_2428 -1.0 -1.8 hypothetical protein compare
Psest_2321 -1.0 -3.0 methylisocitrate lyase compare
Psest_2764 -1.0 -0.6 hypothetical protein compare
Psest_0116 -1.0 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_0196 -1.0 -4.7 Uncharacterized membrane protein, required for spore maturation in B.subtilis. conserved
Psest_0095 -1.0 -1.3 phosphonate C-P lyase system protein PhnH compare
Psest_1163 -1.0 -1.8 diguanylate cyclase (GGDEF) domain compare
Psest_1813 -1.0 -4.9 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3988 -1.0 -2.7 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1960 -1.0 -1.9 Bacterial protein of unknown function (DUF903). compare
Psest_1951 -1.0 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2581 -1.0 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1659 -1.0 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0285 -1.0 -3.2 pilus retraction protein PilT compare
Psest_1511 -1.0 -2.7 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3864 -1.0 -5.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_1699 -1.0 -2.5 Selenocysteine lyase compare
Psest_4304 -1.0 -2.0 Glycosyltransferases, probably involved in cell wall biogenesis compare
Psest_0955 -1.0 -2.5 D,L-lactate:H+ symporter (from data) compare


Specific Phenotypes

For 5 genes in this experiment

For stress Carbenicillin disodium salt in Pseudomonas stutzeri RCH2

For stress Carbenicillin disodium salt across organisms