Experiment set8H37 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Carbenicillin disodium salt 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_3866 -5.0 -18.0 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3322 -4.9 -16.9 TIGR02099 family protein compare
Psest_0952 -4.9 -3.8 Uncharacterized conserved protein compare
Psest_1473 -4.7 -8.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3299 -4.7 -12.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0155 -4.6 -8.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3298 -4.6 -11.5 histidinol dehydrogenase compare
Psest_3648 -4.3 -9.7 anthranilate phosphoribosyltransferase compare
Psest_2581 -4.3 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_3864 -4.3 -17.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0687 -4.2 -10.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3148 -4.0 -1.4 hypothetical protein compare
Psest_0152 -4.0 -6.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_1306 -4.0 -2.6 hypothetical protein compare
Psest_2591 -3.9 -3.2 3-isopropylmalate dehydratase, large subunit compare
Psest_0537 -3.9 -1.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0309 -3.9 -1.6 RND family efflux transporter, MFP subunit compare
Psest_0153 -3.7 -12.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3650 -3.7 -14.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1814 -3.7 -19.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0310 -3.7 -2.5 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1510 -3.7 -3.6 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2578 -3.7 -12.9 O-succinylhomoserine sulfhydrylase compare
Psest_3944 -3.6 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0170 -3.6 -8.2 5,10-methenyltetrahydrofolate synthetase compare
Psest_2088 -3.6 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3647 -3.6 -6.9 Indole-3-glycerol phosphate synthase compare
Psest_2975 -3.6 -2.9 tRNA_Arg_CCT compare
Psest_0013 -3.6 -10.5 Lauroyl/myristoyl acyltransferase compare
Psest_0411 -3.6 -11.4 biotin synthetase compare
Psest_0953 -3.5 -11.0 iron-sulfur cluster-binding protein compare
Psest_0954 -3.5 -8.1 Fe-S oxidoreductase compare
Psest_0062 -3.5 -10.5 tryptophan synthase, alpha subunit compare
Psest_1772 -3.4 -5.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0508 -3.4 -7.4 gamma-glutamyl phosphate reductase compare
Psest_2358 -3.4 -1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0097 -3.4 -1.4 phosphonates metabolism transcriptional regulator PhnF compare
Psest_4219 -3.4 -2.3 DNA polymerase I compare
Psest_1452 -3.3 -10.3 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0280 -3.3 -12.4 homoserine O-acetyltransferase compare
Psest_0266 -3.3 -7.3 thiamine biosynthesis protein ThiS compare
Psest_1496 -3.2 -1.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_0063 -3.2 -9.2 tryptophan synthase, beta subunit compare
Psest_3384 -3.2 -9.9 glutamate 5-kinase compare
Psest_1611 -3.2 -5.2 Beta-lactamase class D conserved
Psest_3226 -3.2 -1.1 Predicted membrane protein compare
Psest_1317 -3.1 -4.3 phosphonate ABC transporter, permease protein PhnE compare
Psest_0279 -3.1 -4.7 methionine biosynthesis protein MetW compare
Psest_0196 -3.0 -14.0 Uncharacterized membrane protein, required for spore maturation in B.subtilis. conserved
Psest_2122 -2.9 -1.0 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1813 -2.9 -10.5 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0445 -2.9 -12.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0326 -2.8 -13.6 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2714 -2.8 -1.7 7-cyano-7-deazaguanine reductase compare
Psest_1509 -2.8 -7.2 quinolinate synthetase complex, A subunit compare
Psest_1765 -2.8 -5.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3883 -2.8 -6.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2579 -2.8 -4.2 amidophosphoribosyltransferase compare
Psest_1295 -2.7 -7.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3818 -2.6 -6.6 endoribonuclease L-PSP, putative compare
Psest_3910 -2.6 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1498 -2.6 -2.6 tol-pal system-associated acyl-CoA thioesterase compare
Psest_0313 -2.5 -3.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3464 -2.5 -10.4 Signal transduction histidine kinase compare
Psest_1167 -2.5 -1.0 hypothetical protein compare
Psest_2945 -2.5 -1.3 septum site-determining protein MinC compare
Psest_1692 -2.5 -9.1 conserved hypothetical protein, YceG family compare
Psest_2584 -2.4 -6.6 Phosphoribosylanthranilate isomerase compare
Psest_0218 -2.4 -2.9 Acyl-CoA hydrolase compare
Psest_1204 -2.4 -2.2 Transcriptional regulators compare
Psest_2946 -2.4 -2.3 septum site-determining protein MinD compare
Psest_3419 -2.3 -8.2 Predicted transcriptional regulators compare
Psest_3943 -2.3 -3.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0857 -2.3 -1.1 Membrane transporters of cations and cationic drugs compare
Psest_0482 -2.3 -4.8 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_0718 -2.3 -4.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_1679 -2.3 -1.7 ribonuclease, Rne/Rng family compare
Psest_1115 -2.2 -2.4 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0259 -2.2 -1.3 cell division ATP-binding protein FtsE compare
Psest_3810 -2.2 -1.5 orotate phosphoribosyltransferase compare
Psest_3721 -2.2 -6.8 Malic enzyme compare
Psest_0267 -2.1 -7.7 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_3998 -2.1 -5.0 glutamate--cysteine ligase compare
Psest_3008 -2.1 -2.5 cobyric acid synthase CobQ compare
Psest_1505 -2.1 -1.7 Organic radical activating enzymes compare
Psest_0514 -2.1 -5.4 lytic murein transglycosylase B compare
Psest_2764 -2.1 -1.0 hypothetical protein compare
Psest_0633 -2.1 -5.9 Phage integrase family. compare
Psest_1163 -2.0 -4.0 diguanylate cyclase (GGDEF) domain compare
Psest_0359 -2.0 -1.9 Transcriptional regulators compare
Psest_0306 -2.0 -12.0 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2981 -2.0 -2.3 sodium pump decarboxylases, gamma subunit compare
Psest_0790 -2.0 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_0189 -2.0 -4.2 Negative regulator of beta-lactamase expression conserved
Psest_0466 -2.0 -3.3 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0311 -2.0 -3.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0281 -2.0 -5.8 Dynamin family. compare
Psest_4396 -2.0 -8.1 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0536 -1.9 -3.0 thiamine-phosphate pyrophosphorylase compare
Psest_1506 -1.9 -5.5 queuosine biosynthesis protein QueC compare
Psest_0285 -1.9 -6.6 pilus retraction protein PilT compare
Psest_1474 -1.9 -2.2 phosphoribosylaminoimidazole synthetase compare
Psest_0998 -1.9 -2.5 poly(A) polymerase compare
Psest_1013 -1.9 -2.9 phosphoribosylamine--glycine ligase compare
Psest_0533 -1.9 -5.3 Sel1 repeat. compare
Psest_1075 -1.8 -3.9 Predicted transcriptional regulators compare
Psest_3338 -1.8 -1.2 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2067 -1.8 -1.1 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1065 -1.8 -1.7 hypothetical protein compare
Psest_0186 -1.8 -4.1 Protein-disulfide isomerase compare
Psest_2992 -1.8 -3.5 Uncharacterized conserved protein compare
Psest_0691 -1.8 -8.6 ribonuclease R compare
Psest_1663 -1.8 -2.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3649 -1.8 -6.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0325 -1.7 -9.9 Putative threonine efflux protein compare
Psest_0589 -1.7 -6.6 Uncharacterized protein conserved in bacteria compare
Psest_0120 -1.7 -5.0 hypothetical protein compare
Psest_3990 -1.7 -5.3 PAP2 superfamily. compare
Psest_3247 -1.7 -1.6 Uncharacterized membrane protein compare
Psest_1261 -1.7 -5.7 Uncharacterized protein conserved in bacteria compare
Psest_3413 -1.7 -2.3 hypothetical protein compare
Psest_1724 -1.7 -2.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3896 -1.7 -1.5 arsenite-activated ATPase ArsA compare
Psest_2613 -1.7 -1.3 hypothetical protein compare
Psest_1241 -1.7 -5.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_2138 -1.7 -3.5 RND family efflux transporter, MFP subunit compare
Psest_0515 -1.7 -2.3 rare lipoprotein A compare
Psest_0212 -1.6 -0.9 exodeoxyribonuclease V, gamma subunit compare
Psest_2589 -1.6 -6.6 3-isopropylmalate dehydrogenase compare
Psest_2621 -1.6 -2.8 TadE-like protein. compare
Psest_3545 -1.6 -2.0 clan AA aspartic protease, TIGR02281 family compare
Psest_0078 -1.6 -0.7 hypothetical protein compare
Psest_3129 -1.6 -1.1 tyrosine recombinase XerD compare
Psest_0367 -1.6 -1.1 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_4252 -1.6 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_4098 -1.6 -2.5 Superfamily I DNA and RNA helicases compare
Psest_4363 -1.6 -6.1 ATPases involved in chromosome partitioning compare
Psest_0477 -1.6 -7.8 thiamine biosynthesis protein ThiC compare
Psest_1458 -1.6 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_0297 -1.6 -3.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1111 -1.5 -3.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_4250 -1.5 -7.4 hypothetical protein compare
Psest_0708 -1.5 -1.6 outer membrane assembly lipoprotein YfiO compare
Psest_1532 -1.5 -2.6 DNA recombination-dependent growth factor C compare
Psest_4191 -1.5 -1.5 Transcriptional regulator compare
Psest_4366 -1.5 -5.1 Multisubunit Na+/H+ antiporter, MnhG subunit compare
Psest_2580 -1.5 -4.2 Uncharacterized membrane protein, required for colicin V production compare
Psest_1098 -1.5 -5.6 Restriction endonuclease S subunits compare
Psest_0216 -1.5 -3.1 Predicted permeases compare
Psest_2442 -1.5 -1.6 hypothetical protein compare
Psest_3177 -1.5 -1.3 hypothetical protein compare
Psest_3159 -1.5 -4.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3878 -1.5 -2.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4214 -1.5 -7.4 hypothetical protein compare
Psest_2590 -1.5 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_0955 -1.4 -3.5 D,L-lactate:H+ symporter (from data) compare
Psest_0613 -1.4 -5.8 hypothetical protein compare
Psest_2139 -1.4 -7.3 Cation/multidrug efflux pump compare
Psest_1613 -1.4 -3.4 hypothetical protein compare
Psest_0133 -1.4 -1.1 type VI secretion protein, VC_A0107 family compare
Psest_1492 -1.4 -4.1 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3187 -1.4 -3.5 hypothetical protein compare
Psest_4124 -1.4 -2.8 hypothetical protein compare
Psest_2631 -1.4 -4.0 AraC-type DNA-binding domain-containing proteins compare
Psest_1643 -1.4 -0.9 hypothetical protein compare
Psest_0136 -1.4 -8.2 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3918 -1.4 -4.7 hypothetical protein compare
Psest_3228 -1.4 -5.6 Zn-dependent protease with chaperone function compare
Psest_1488 -1.4 -9.0 outer membrane porin, OprD family. compare
Psest_1809 -1.4 -7.6 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1657 -1.4 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1315 -1.4 -1.0 hypothetical protein compare
Psest_1640 -1.4 -7.7 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0138 -1.4 -6.7 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3146 -1.4 -1.4 hypothetical protein compare
Psest_1870 -1.4 -0.9 Transcriptional regulators compare
Psest_2293 -1.4 -1.0 hypothetical protein compare
Psest_2848 -1.4 -2.2 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_4251 -1.4 -11.1 hypothetical protein compare
Psest_1132 -1.3 -2.6 mutator mutT protein compare
Psest_4111 -1.3 -7.2 hypothetical protein compare
Psest_4110 -1.3 -6.9 Deoxycytidylate deaminase compare
Psest_0172 -1.3 -4.6 Uncharacterized protein conserved in bacteria compare
Psest_0401 -1.3 -0.9 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_4298 -1.3 -0.6 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2312 -1.3 -5.6 Small-conductance mechanosensitive channel compare
Psest_1790 -1.3 -2.9 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_0316 -1.3 -1.2 Cytochrome c556 compare
Psest_0415 -1.3 -2.6 dethiobiotin synthase compare
Psest_0412 -1.3 -6.0 8-amino-7-oxononanoate synthase compare
Psest_0855 -1.3 -3.2 NAD-dependent aldehyde dehydrogenases compare
Psest_1096 -1.3 -5.9 hypothetical protein compare
Psest_3422 -1.3 -2.9 hypothetical protein compare
Psest_3937 -1.3 -1.0 ATP-dependent protease HslVU, ATPase subunit compare
Psest_4345 -1.3 -7.7 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3243 -1.3 -4.3 TIGR00730 family protein compare
Psest_3429 -1.3 -5.5 hypothetical protein compare
Psest_1012 -1.3 -2.9 Signal transduction histidine kinase compare
Psest_0936 -1.3 -7.2 hypothetical protein compare
Psest_4297 -1.3 -6.3 PAS domain S-box compare


Specific Phenotypes

For 64 genes in this experiment

For stress Carbenicillin disodium salt in Pseudomonas stutzeri RCH2

For stress Carbenicillin disodium salt across organisms