Experiment set8H37 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Carbenicillin disodium salt 0.008 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Psest_2260 +5.1 46.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1635 +5.0 46.0 Signal transduction histidine kinase compare
Psest_0740 +4.7 16.1 Transcriptional regulator compare
Psest_1924 +4.2 38.7 adhesin-associated MmpL efflux pump (from data) compare
Psest_1923 +4.0 23.8 adhesin-associated BNR repeat protein (from data) compare
Psest_0538 +3.9 38.3 Signal transduction histidine kinase compare
Psest_1122 +3.8 33.6 putative adhesin (DUF1302) (from data) compare
Psest_0999 +3.7 13.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4273 +3.6 28.7 Lysophospholipase compare
Psest_1804 +3.5 12.5 Superfamily II DNA and RNA helicases compare
Psest_3100 +3.4 22.0 RNA polymerase sigma factor RpoE compare
Psest_1805 +3.0 5.5 integration host factor, beta subunit compare
Psest_3296 +3.0 9.6 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_0697 +2.9 7.6 ribosomal protein L9 compare
Psest_1725 +2.6 17.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1974 +2.5 10.8 integration host factor, alpha subunit compare
Psest_0459 +2.4 18.5 Predicted carbamoyl transferase, NodU family compare
Psest_1722 +2.4 12.8 flagellar protein export ATPase FliI compare
Psest_0497 +2.3 12.3 Flagellar motor protein compare
Psest_0417 +2.3 7.7 Acyl-CoA dehydrogenases compare
Psest_2083 +2.2 8.8 Putative sterol carrier protein compare
Psest_0487 +2.2 8.6 Uncharacterized protein conserved in bacteria compare
Psest_0164 +2.1 2.2 Glutaredoxin, GrxC family compare
Psest_2383 +2.1 12.4 Predicted transcriptional regulators compare
Psest_1601 +2.0 2.4 Signal transduction histidine kinase compare
Psest_0307 +2.0 7.5 Cytochrome B561 compare
Psest_0061 +2.0 3.9 hypothetical protein compare
Psest_2950 +1.9 6.6 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_2413 +1.9 3.2 Periplasmic protein TonB, links inner and outer membranes compare
Psest_1081 +1.9 7.1 hypothetical protein compare
Psest_1734 +1.8 5.2 flagellar biosynthetic protein FliR compare
Psest_1731 +1.8 4.0 flagellar biosynthetic protein FliO compare
Psest_2793 +1.8 8.6 hypothetical protein compare
Psest_3289 +1.8 7.8 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3963 +1.8 14.3 PAS domain S-box compare
Psest_3031 +1.8 2.0 hypothetical protein compare
Psest_1388 +1.8 2.7 Uncharacterized protein conserved in bacteria compare
Psest_2441 +1.7 6.4 hypothetical protein compare
Psest_0969 +1.7 4.5 transcription elongation factor GreA compare
Psest_2900 +1.7 6.3 hypothetical protein compare
Psest_1719 +1.7 8.4 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_4335 +1.7 2.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0692 +1.7 4.3 rRNA methylase, putative, group 3 compare
Psest_4163 +1.7 4.0 hypothetical protein compare
Psest_1000 +1.7 7.9 PAS domain S-box compare
Psest_0165 +1.6 3.9 protein-export chaperone SecB compare
Psest_1999 +1.6 2.3 pseudouridine synthase compare
Psest_3157 +1.6 4.8 hypothetical protein compare
Psest_2778 +1.6 3.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2906 +1.6 6.0 tRNA_Thr_CGT compare
Psest_1994 +1.6 6.3 Amidases related to nicotinamidase compare
Psest_3531 +1.6 1.9 Peptidase propeptide and YPEB domain. compare
Psest_2586 +1.6 13.9 FimV N-terminal domain compare
Psest_0496 +1.6 8.1 flagellar motor stator protein MotA compare
Psest_2025 +1.6 1.9 cold shock domain protein CspD compare
Psest_0795 +1.5 4.8 ABC-type multidrug transport system, ATPase component compare
Psest_1602 +1.5 2.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4003 +1.5 7.4 TIGR00153 family protein compare
Psest_3749 +1.5 9.1 Response regulator of the LytR/AlgR family compare
Psest_4004 +1.5 3.9 Uncharacterized conserved protein compare
Psest_3565 +1.5 1.8 hypothetical protein compare
Psest_2101 +1.5 3.1 hypothetical protein compare
Psest_1720 +1.5 8.5 flagellar motor switch protein FliG compare
Psest_1733 +1.5 3.9 flagellar biosynthetic protein FliQ compare
Psest_1504 +1.5 5.1 tol-pal system protein YbgF compare
Psest_1389 +1.5 6.5 hypothetical protein compare
Psest_1186 +1.4 4.5 heavy metal sensor kinase compare
Psest_0511 +1.4 2.2 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_1147 +1.4 3.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3761 +1.4 4.2 Transcription elongation factor compare
Psest_2757 +1.4 1.9 hypothetical protein compare
Psest_4113 +1.4 4.7 hypothetical protein compare
Psest_2017 +1.4 4.1 Predicted acyltransferase compare
Psest_1404 +1.4 6.8 Methyltransferase domain. compare
Psest_3546 +1.4 1.4 Phosphatidylglycerophosphatase A and related proteins compare
Psest_1354 +1.4 2.3 Uncharacterized protein conserved in bacteria compare
Psest_0696 +1.4 5.9 hypothetical protein compare
Psest_3286 +1.3 7.0 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_0770 +1.3 3.5 alkylphosphonate utilization operon protein PhnA compare
Psest_1408 +1.3 4.1 Predicted unusual protein kinase compare
Psest_0209 +1.3 1.6 membrane protein AbrB duplication compare
Psest_0771 +1.3 9.6 Acyl-CoA hydrolase compare
Psest_0959 +1.3 3.0 Uncharacterized protein conserved in bacteria compare
Psest_2726 +1.3 2.4 Rhodanese-related sulfurtransferase compare
Psest_3087 +1.3 4.4 Transcriptional regulator compare
Psest_0546 +1.3 5.7 hypothetical protein compare
Psest_1537 +1.3 6.8 Bacterioferritin-associated ferredoxin compare
Psest_1360 +1.3 3.9 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_1029 +1.3 2.9 Regulator of competence-specific genes compare
Psest_1394 +1.3 5.5 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit compare
Psest_0779 +1.3 3.5 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Psest_3626 +1.3 4.4 hypothetical protein compare
Psest_0595 +1.3 6.4 Uncharacterized conserved protein compare
Psest_3660 +1.3 6.3 PAS domain S-box compare
Psest_1185 +1.3 2.7 heavy metal response regulator compare
Psest_0083 +1.3 3.7 Uncharacterized conserved protein compare
Psest_0408 +1.3 3.3 Protein involved in catabolism of external DNA compare
Psest_0378 +1.3 2.1 Lactate dehydrogenase and related dehydrogenases compare
Psest_2889 +1.2 8.9 Predicted flavoprotein involved in K+ transport compare
Psest_3395 +1.2 1.6 hypothetical protein compare
Psest_1783 +1.2 3.1 Predicted transporter component compare
Psest_1600 +1.2 1.4 hypothetical protein compare
Psest_3472 +1.2 7.1 Long-chain acyl-CoA synthetases (AMP-forming) compare
Psest_2890 +1.2 6.8 diguanylate cyclase (GGDEF) domain compare
Psest_2585 +1.2 1.4 pseudouridylate synthase I compare
Psest_1735 +1.2 5.0 flagellar biosynthetic protein FlhB compare
Psest_0891 +1.2 3.9 Uncharacterized protein conserved in bacteria compare
Psest_0869 +1.2 2.7 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0318 +1.2 5.4 NAD-dependent DNA ligase (contains BRCT domain type II) compare
Psest_3351 +1.2 5.6 peptide chain release factor 3 compare
Psest_3013 +1.2 1.4 cobyrinic acid a,c-diamide synthase compare
Psest_0562 +1.2 5.8 magnesium-translocating P-type ATPase compare
Psest_0994 +1.2 5.4 L-aspartate-alpha-decarboxylase compare
Psest_0351 +1.2 3.8 hypothetical protein compare
Psest_0192 +1.2 5.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0243 +1.2 1.3 hypothetical protein compare
Psest_2421 +1.2 4.2 formate dehydrogenase family accessory protein FdhD compare
Psest_3994 +1.2 6.5 Signal transduction histidine kinase compare
Psest_2794 +1.2 3.0 Predicted permease, DMT superfamily compare
Psest_0348 +1.2 4.9 hypothetical protein compare
Psest_3734 +1.2 6.6 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis compare
Psest_1235 +1.2 7.0 Leucyl aminopeptidase compare
Psest_2753 +1.2 6.3 Uncharacterized protein conserved in bacteria compare
Psest_0725 +1.2 2.2 Negative regulator of beta-lactamase expression compare
Psest_1079 +1.1 3.8 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_0566 +1.1 6.6 urea ABC transporter, permease component (from data) compare
Psest_2712 +1.1 5.4 Surface lipoprotein compare
Psest_0227 +1.1 2.5 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_1083 +1.1 5.7 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_0402 +1.1 2.4 glycosyltransferase, MGT family compare
Psest_3974 +1.1 4.4 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_0471 +1.1 6.3 hypothetical protein compare
Psest_1979 +1.1 3.5 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Psest_3189 +1.1 2.2 hypothetical protein compare
Psest_0484 +1.1 3.9 hypothetical protein compare
Psest_2119 +1.1 3.5 Glycine/D-amino acid oxidases (deaminating) compare
Psest_1774 +1.1 2.0 Glutathione peroxidase compare
Psest_1768 +1.1 5.1 thiopurine S-methyltransferase, Se/Te detoxification family compare
Psest_4203 +1.1 4.2 NAD/NADP transhydrogenase alpha subunit compare
Psest_0175 +1.1 6.0 Xaa-Pro aminopeptidase compare
Psest_1912 +1.1 1.8 Protein of unknown function (DUF1260). compare
Psest_0662 +1.1 2.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1472 +1.1 6.8 Protein of unknown function (DUF3108). compare
Psest_0006 +1.1 4.9 alkyl hydroperoxide reductase, F subunit compare
Psest_0056 +1.1 8.7 Glutathione S-transferase compare
Psest_1677 +1.1 2.0 Protein-tyrosine-phosphatase compare
Psest_3068 +1.1 3.7 hypothetical protein compare
Psest_4133 +1.1 6.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_1518 +1.1 1.5 tRNA_Ser_CGA compare
Psest_2884 +1.1 3.5 HAD-superfamily phosphatase, subfamily IIIC/FkbH-like domain compare
Psest_0958 +1.1 6.1 Oligoketide cyclase/lipid transport protein compare
Psest_3966 +1.1 7.6 Predicted thioesterase compare
Psest_0343 +1.1 7.7 hypothetical membrane protein, TIGR01666 compare
Psest_0734 +1.1 2.5 RND family efflux transporter, MFP subunit compare
Psest_1561 +1.1 4.5 Uncharacterized conserved protein compare
Psest_2316 +1.1 6.9 phosphoenolpyruvate synthase compare
Psest_3538 +1.1 5.3 hypothetical protein compare
Psest_1840 +1.1 8.9 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_1293 +1.1 1.9 VanZ like family. compare
Psest_1723 +1.1 3.9 flagellar export protein FliJ compare
Psest_2105 +1.1 3.8 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain compare
Psest_4149 +1.1 2.9 fagellar hook-basal body proteins compare
Psest_0738 +1.1 4.6 copper-(or silver)-translocating P-type ATPase compare
Psest_1031 +1.1 6.0 Uncharacterized protein conserved in bacteria compare
Psest_1729 +1.1 4.6 flagellar motor switch protein FliM compare
Psest_0319 +1.1 4.1 Predicted ferric reductase compare
Psest_3212 +1.0 2.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3400 +1.0 1.3 Copper resistance protein D. compare
Psest_0796 +1.0 3.3 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0446 +1.0 6.0 hypothetical protein compare
Psest_0390 +1.0 1.4 Short-chain dehydrogenases of various substrate specificities compare
Psest_2901 +1.0 1.6 hypothetical protein compare
Psest_1792 +1.0 2.7 RND family efflux transporter, MFP subunit compare
Psest_4280 +1.0 2.6 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_1400 +1.0 4.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0638 +1.0 5.6 Predicted lactoylglutathione lyase compare
Psest_2784 +1.0 7.2 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Psest_0547 +1.0 2.0 Urease accessory protein UreF compare
Psest_1308 +1.0 3.9 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2128 +1.0 2.9 Acyl-CoA dehydrogenases compare
Psest_4282 +1.0 7.8 spermidine/putrescine ABC transporter ATP-binding subunit compare
Psest_2924 +1.0 3.0 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_1660 +1.0 1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3697 +1.0 0.9 Outer membrane lipoprotein carrier protein LolA. compare
Psest_0751 +1.0 4.4 Arabinose efflux permease compare
Psest_3841 +1.0 5.2 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_4281 +1.0 8.0 ABC-type spermidine/putrescine transport system, permease component I compare
Psest_1082 +1.0 1.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1349 +1.0 2.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0752 +1.0 4.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_1428 +1.0 2.4 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_3295 +1.0 2.9 dinuclear metal center protein, YbgI/SA1388 family compare
Psest_0191 +1.0 1.1 PAS domain S-box compare
Psest_2039 +1.0 3.3 PQQ-dependent catabolism-associated CXXCW motif protein compare
Psest_3938 +1.0 2.6 Uncharacterized protein conserved in bacteria compare
Psest_3662 +1.0 1.4 DnaJ-domain-containing proteins 1 compare
Psest_3004 +1.0 3.2 cobalamin 5'-phosphate synthase/cobalamin synthase compare
Psest_0510 +1.0 2.9 iojap-like ribosome-associated protein compare
Psest_1625 +1.0 2.2 hypothetical protein compare
Psest_1737 +1.0 4.2 flagellar biosynthesis protein FlhA compare


Specific Phenotypes

For 64 genes in this experiment

For stress Carbenicillin disodium salt in Pseudomonas stutzeri RCH2

For stress Carbenicillin disodium salt across organisms