Experiment set8H36 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Benzethonium chloride 0.008 mM

200 most important genes:

  gene name fitness t score description  
Psest_0152 -7.0 -7.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_0153 -6.9 -13.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3721 -6.9 -6.7 Malic enzyme compare
Psest_0476 -6.9 -4.7 type I secretion outer membrane protein, TolC family compare
Psest_3866 -6.8 -18.2 threonine ammonia-lyase, biosynthetic, long form compare
Psest_1154 -6.7 -9.2 RND family efflux transporter, MFP subunit conserved
Psest_0952 -6.7 -3.9 Uncharacterized conserved protein compare
Psest_0326 -6.6 -19.2 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0155 -6.6 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0279 -6.5 -8.8 methionine biosynthesis protein MetW compare
Psest_2584 -6.5 -8.3 Phosphoribosylanthranilate isomerase compare
Psest_3864 -6.5 -16.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3647 -6.5 -8.7 Indole-3-glycerol phosphate synthase compare
Psest_0953 -6.4 -12.4 iron-sulfur cluster-binding protein compare
Psest_1473 -6.4 -8.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0062 -6.3 -8.7 tryptophan synthase, alpha subunit compare
Psest_1153 -6.3 -26.8 Cation/multidrug efflux pump conserved
Psest_0170 -6.2 -9.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_2591 -6.1 -4.5 3-isopropylmalate dehydratase, large subunit compare
Psest_3648 -6.1 -10.2 anthranilate phosphoribosyltransferase compare
Psest_3322 -6.1 -20.9 TIGR02099 family protein compare
Psest_0325 -6.0 -16.2 Putative threonine efflux protein compare
Psest_3650 -6.0 -16.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3303 -6.0 -4.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3299 -6.0 -17.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3929 -6.0 -8.6 hypothetical protein compare
Psest_2025 -5.9 -1.3 cold shock domain protein CspD compare
Psest_2590 -5.9 -1.3 3-isopropylmalate dehydratase, small subunit compare
Psest_2578 -5.8 -17.8 O-succinylhomoserine sulfhydrylase compare
Psest_3226 -5.8 -1.3 Predicted membrane protein compare
Psest_3307 -5.7 -7.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3298 -5.7 -14.8 histidinol dehydrogenase compare
Psest_3384 -5.7 -11.0 glutamate 5-kinase compare
Psest_3305 -5.7 -5.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3306 -5.7 -5.5 conserved hypothetical integral membrane protein compare
Psest_0508 -5.6 -10.1 gamma-glutamyl phosphate reductase compare
Psest_3304 -5.6 -3.9 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0393 -5.5 -3.8 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2712 -5.4 -6.5 Surface lipoprotein compare
Psest_0280 -5.4 -16.0 homoserine O-acetyltransferase compare
Psest_0954 -5.3 -8.2 Fe-S oxidoreductase compare
Psest_1122 -5.2 -26.0 putative adhesin (DUF1302) (from data) compare
Psest_0267 -5.2 -18.4 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_3944 -5.1 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3818 -5.1 -9.5 endoribonuclease L-PSP, putative compare
Psest_0411 -5.1 -13.3 biotin synthetase compare
Psest_0537 -5.1 -2.2 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0266 -5.1 -10.5 thiamine biosynthesis protein ThiS compare
Psest_1452 -5.0 -9.6 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0536 -5.0 -3.4 thiamine-phosphate pyrophosphorylase compare
Psest_1510 -4.9 -3.4 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0687 -4.8 -12.5 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0461 -4.8 -8.1 Glycosyltransferase involved in LPS biosynthesis compare
Psest_0063 -4.7 -10.8 tryptophan synthase, beta subunit compare
Psest_2579 -4.5 -3.1 amidophosphoribosyltransferase compare
Psest_0285 -4.5 -10.0 pilus retraction protein PilT compare
Psest_2589 -4.4 -10.7 3-isopropylmalate dehydrogenase compare
Psest_0477 -4.4 -18.2 thiamine biosynthesis protein ThiC compare
Psest_1115 -4.4 -3.9 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1295 -4.3 -8.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3297 -4.3 -14.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0718 -4.2 -5.4 nicotinate-nucleotide pyrophosphorylase compare
Psest_2088 -4.2 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_0024 -4.2 -13.4 LysM domain. compare
Psest_1496 -4.2 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_0313 -4.1 -2.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2323 -4.1 -17.3 Uncharacterized protein conserved in archaea compare
Psest_2324 -4.0 -18.3 hypothetical protein compare
Psest_1509 -3.9 -10.3 quinolinate synthetase complex, A subunit compare
Psest_2329 -3.9 -18.3 Transcriptional regulator compare
Psest_0193 -3.9 -1.2 conserved hypothetical protein compare
Psest_2333 -3.9 -1.2 Protein of unknown function (DUF3359). compare
Psest_2260 -3.9 -25.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0466 -3.9 -4.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0306 -3.8 -21.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0412 -3.8 -16.7 8-amino-7-oxononanoate synthase compare
Psest_1635 -3.8 -23.6 Signal transduction histidine kinase compare
Psest_3998 -3.8 -5.7 glutamate--cysteine ligase compare
Psest_0951 -3.7 -13.7 FAD/FMN-containing dehydrogenases compare
Psest_1765 -3.7 -8.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4085 -3.7 -18.3 Biotin carboxylase compare
Psest_2325 -3.6 -10.4 alpha-L-glutamate ligase-related protein compare
Psest_3745 -3.6 -5.8 Uncharacterized enzyme of heme biosynthesis compare
Psest_0138 -3.6 -14.6 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_4084 -3.6 -18.5 oxaloacetate decarboxylase alpha subunit compare
Psest_2946 -3.5 -3.4 septum site-determining protein MinD compare
Psest_1772 -3.5 -6.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1724 -3.5 -3.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0413 -3.5 -7.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3649 -3.4 -11.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3316 -3.4 -11.4 Predicted P-loop-containing kinase compare
Psest_0136 -3.4 -13.9 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_0414 -3.3 -6.5 biotin biosynthesis protein BioC compare
Psest_2507 -3.3 -18.4 Flagellin and related hook-associated proteins compare
Psest_0445 -3.3 -17.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_4298 -3.3 -1.0 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_4086 -3.3 -16.4 Transcriptional regulator compare
Psest_2067 -3.2 -1.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3843 -3.2 -13.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1691 -3.2 -4.9 aminodeoxychorismate lyase compare
Psest_3720 -3.2 -19.2 penicillin-binding protein, 1A family compare
Psest_0260 -3.2 -1.9 Cell division protein compare
Psest_0459 -3.2 -14.3 Predicted carbamoyl transferase, NodU family compare
Psest_1013 -3.1 -3.6 phosphoribosylamine--glycine ligase compare
Psest_3810 -3.1 -2.0 orotate phosphoribosyltransferase compare
Psest_2504 -3.0 -6.3 flagellar biosynthetic protein FliS compare
Psest_3339 -3.0 -6.4 Signal transduction histidine kinase compare
Psest_0489 -2.9 -2.8 phosphoserine phosphatase SerB compare
Psest_3910 -2.9 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0161 -2.9 -2.6 Membrane-bound metallopeptidase compare
Psest_1474 -2.9 -2.0 phosphoribosylaminoimidazole synthetase compare
Psest_0455 -2.9 -9.6 ADP-heptose:LPS heptosyltransferase compare
Psest_0186 -2.8 -6.7 Protein-disulfide isomerase compare
Psest_0137 -2.8 -10.1 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_0442 -2.8 -6.7 ATPases of the AAA+ class compare
Psest_4213 -2.8 -15.3 hypothetical protein conserved
Psest_3323 -2.7 -6.0 ribonuclease, Rne/Rng family compare
Psest_0515 -2.7 -4.1 rare lipoprotein A compare
Psest_3189 -2.7 -3.5 hypothetical protein compare
Psest_3988 -2.7 -10.7 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0298 -2.6 -5.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3159 -2.6 -8.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1037 -2.6 -2.5 acetolactate synthase, small subunit compare
Psest_0415 -2.5 -4.4 dethiobiotin synthase compare
Psest_2651 -2.5 -5.4 DNA topoisomerase I, bacterial compare
Psest_4345 -2.5 -8.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0958 -2.5 -8.4 Oligoketide cyclase/lipid transport protein compare
Psest_0139 -2.5 -4.5 ABC-type histidine transport system, ATPase component compare
Psest_2326 -2.4 -16.6 aminodeoxychorismate synthase, component I, bacterial clade compare
Psest_1117 -2.4 -6.3 Lipid A 3-O-deacylase (PagL). compare
Psest_0993 -2.3 -11.6 Glucose-6-phosphate isomerase compare
Psest_2104 -2.3 -3.0 IscR-regulated protein YhgI compare
Psest_3338 -2.3 -1.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1163 -2.3 -5.5 diguanylate cyclase (GGDEF) domain compare
Psest_1049 -2.2 -4.6 Uncharacterized paraquat-inducible protein A compare
Psest_1048 -2.2 -10.2 Uncharacterized paraquat-inducible protein A conserved
Psest_3188 -2.2 -4.0 hypothetical protein compare
Psest_3943 -2.1 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2764 -2.1 -1.2 hypothetical protein compare
Psest_1686 -2.1 -3.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2641 -2.1 -14.2 Conserved secreted protein compare
Psest_2232 -2.1 -13.9 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3960 -2.1 -1.5 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1292 -2.1 -9.8 monothiol glutaredoxin, Grx4 family compare
Psest_0296 -2.1 -8.7 glutathione synthetase, prokaryotic compare
Psest_1065 -2.0 -2.3 hypothetical protein compare
Psest_0302 -2.0 -14.2 Chemotaxis protein histidine kinase and related kinases compare
Psest_4396 -2.0 -9.3 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2581 -2.0 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_1050 -2.0 -14.4 Paraquat-inducible protein B conserved
Psest_1692 -2.0 -8.4 conserved hypothetical protein, YceG family compare
Psest_2379 -2.0 -11.8 PAS domain S-box compare
Psest_0327 -1.9 -3.8 Transcriptional regulator compare
Psest_2775 -1.9 -2.6 Glycerol-3-phosphate dehydrogenase compare
Psest_0120 -1.9 -5.2 hypothetical protein compare
Psest_0259 -1.9 -1.5 cell division ATP-binding protein FtsE compare
Psest_0301 -1.9 -6.5 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0538 -1.9 -17.4 Signal transduction histidine kinase compare
Psest_1870 -1.8 -1.4 Transcriptional regulators compare
Psest_0498 -1.8 -1.3 ribosome small subunit-dependent GTPase A compare
Psest_4083 -1.8 -11.6 Predicted permease compare
Psest_3020 -1.8 -7.1 Cell wall-associated hydrolases (invasion-associated proteins) compare
Psest_0998 -1.8 -2.6 poly(A) polymerase compare
Psest_4191 -1.7 -2.6 Transcriptional regulator compare
Psest_2958 -1.7 -11.3 flagellar hook-associated protein 3 compare
Psest_4193 -1.7 -9.3 Predicted signal transduction protein compare
Psest_0300 -1.7 -8.7 Methyl-accepting chemotaxis protein compare
Psest_1947 -1.7 -1.2 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_4113 -1.7 -8.4 hypothetical protein compare
Psest_2342 -1.7 -6.7 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_1567 -1.7 -4.7 Transcriptional regulator compare
Psest_0514 -1.7 -5.0 lytic murein transglycosylase B compare
Psest_3372 -1.7 -9.6 Tfp pilus assembly protein PilW compare
Psest_2090 -1.7 -3.0 Protein of unknown function (DUF2970). compare
Psest_2680 -1.6 -6.3 transcriptional regulator, BolA protein family compare
Psest_0207 -1.6 -3.0 hypothetical protein compare
Psest_3148 -1.6 -1.4 hypothetical protein compare
Psest_2464 -1.6 -6.7 Predicted permease compare
Psest_1923 -1.6 -5.1 adhesin-associated BNR repeat protein (from data) compare
Psest_1472 -1.6 -7.8 Protein of unknown function (DUF3108). compare
Psest_0462 -1.6 -14.1 Lipid A core - O-antigen ligase and related enzymes compare
Psest_2809 -1.6 -2.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1132 -1.5 -2.6 mutator mutT protein compare
Psest_2872 -1.5 -1.7 protein RecA compare
Psest_1640 -1.5 -9.5 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2580 -1.5 -5.0 Uncharacterized membrane protein, required for colicin V production compare
Psest_0281 -1.5 -6.7 Dynamin family. compare
Psest_3371 -1.5 -7.4 type IV pilus modification protein PilV compare
Psest_3373 -1.5 -5.4 Tfp pilus assembly protein PilX compare
Psest_1144 -1.5 -1.8 AmpG-related permease compare
Psest_0465 -1.5 -11.5 Acetyltransferase (isoleucine patch superfamily) compare
Psest_3645 -1.5 -9.0 Predicted redox protein, regulator of disulfide bond formation compare
Psest_4297 -1.5 -7.6 PAS domain S-box compare
Psest_3146 -1.5 -1.8 hypothetical protein compare
Psest_4346 -1.5 -3.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3370 -1.5 -9.4 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0297 -1.4 -4.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3374 -1.4 -9.0 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_0464 -1.4 -10.7 Mannosyltransferase OCH1 and related enzymes compare
Psest_0045 -1.4 -5.7 hypothetical protein compare


Specific Phenotypes

For 35 genes in this experiment

For stress Benzethonium chloride in Pseudomonas stutzeri RCH2

For stress Benzethonium chloride across organisms