Experiment set8H35 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media

200 most important genes:

  gene name fitness t score description  
Psest_1473 -6.9 -6.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0153 -6.1 -15.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0279 -6.0 -9.1 methionine biosynthesis protein MetW compare
Psest_3866 -6.0 -21.4 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0687 -5.7 -11.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3299 -5.7 -15.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3226 -5.7 -1.4 Predicted membrane protein compare
Psest_0155 -5.6 -9.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0152 -5.6 -6.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_2578 -5.4 -17.0 O-succinylhomoserine sulfhydrylase compare
Psest_3648 -5.4 -11.5 anthranilate phosphoribosyltransferase compare
Psest_2333 -5.3 -1.3 Protein of unknown function (DUF3359). compare
Psest_2584 -5.3 -9.2 Phosphoribosylanthranilate isomerase compare
Psest_0280 -5.3 -18.0 homoserine O-acetyltransferase compare
Psest_3650 -5.2 -17.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3384 -5.2 -12.2 glutamate 5-kinase compare
Psest_0952 -5.1 -5.1 Uncharacterized conserved protein compare
Psest_3298 -5.1 -14.7 histidinol dehydrogenase compare
Psest_3944 -5.1 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3647 -5.0 -8.2 Indole-3-glycerol phosphate synthase compare
Psest_0062 -4.9 -13.5 tryptophan synthase, alpha subunit compare
Psest_3864 -4.9 -20.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2088 -4.8 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0954 -4.8 -9.7 Fe-S oxidoreductase compare
Psest_0063 -4.7 -9.9 tryptophan synthase, beta subunit compare
Psest_0326 -4.6 -16.9 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0508 -4.6 -11.0 gamma-glutamyl phosphate reductase compare
Psest_1452 -4.5 -11.6 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0170 -4.5 -10.2 5,10-methenyltetrahydrofolate synthetase compare
Psest_1295 -4.5 -7.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0953 -4.4 -13.6 iron-sulfur cluster-binding protein compare
Psest_3818 -4.4 -8.2 endoribonuclease L-PSP, putative compare
Psest_2579 -4.3 -2.9 amidophosphoribosyltransferase compare
Psest_0325 -4.2 -15.8 Putative threonine efflux protein compare
Psest_0411 -4.2 -13.2 biotin synthetase compare
Psest_1496 -4.2 -1.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_1772 -4.0 -6.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2590 -4.0 -1.4 3-isopropylmalate dehydratase, small subunit compare
Psest_0313 -3.9 -3.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2589 -3.9 -12.4 3-isopropylmalate dehydrogenase compare
Psest_0393 -3.6 -9.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3998 -3.4 -6.5 glutamate--cysteine ligase compare
Psest_1013 -3.4 -2.3 phosphoribosylamine--glycine ligase compare
Psest_0306 -3.4 -19.4 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2591 -3.3 -3.8 3-isopropylmalate dehydratase, large subunit compare
Psest_0445 -3.1 -17.9 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3810 -3.0 -2.1 orotate phosphoribosyltransferase compare
Psest_0193 -2.9 -1.4 conserved hypothetical protein compare
Psest_1474 -2.9 -2.0 phosphoribosylaminoimidazole synthetase compare
Psest_3297 -2.9 -13.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1814 -2.9 -18.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1509 -2.9 -13.7 quinolinate synthetase complex, A subunit compare
Psest_0489 -2.8 -2.7 phosphoserine phosphatase SerB compare
Psest_0285 -2.8 -11.5 pilus retraction protein PilT compare
Psest_3649 -2.8 -12.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1813 -2.8 -14.2 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0415 -2.8 -5.6 dethiobiotin synthase compare
Psest_3721 -2.7 -6.7 Malic enzyme compare
Psest_0515 -2.6 -3.6 rare lipoprotein A compare
Psest_2329 -2.6 -14.3 Transcriptional regulator compare
Psest_0414 -2.6 -6.0 biotin biosynthesis protein BioC compare
Psest_2324 -2.6 -15.6 hypothetical protein compare
Psest_0266 -2.6 -8.0 thiamine biosynthesis protein ThiS compare
Psest_3159 -2.5 -7.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2325 -2.5 -12.8 alpha-L-glutamate ligase-related protein compare
Psest_1163 -2.5 -6.3 diguanylate cyclase (GGDEF) domain compare
Psest_2323 -2.5 -13.7 Uncharacterized protein conserved in archaea compare
Psest_3943 -2.4 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0412 -2.4 -14.0 8-amino-7-oxononanoate synthase compare
Psest_2067 -2.4 -1.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2862 -2.4 -10.5 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3129 -2.4 -1.8 tyrosine recombinase XerD compare
Psest_4085 -2.4 -15.9 Biotin carboxylase compare
Psest_2946 -2.3 -4.4 septum site-determining protein MinD compare
Psest_0297 -2.3 -5.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1115 -2.3 -4.6 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0413 -2.3 -5.6 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1765 -2.3 -7.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1037 -2.3 -2.9 acetolactate synthase, small subunit compare
Psest_4084 -2.2 -15.7 oxaloacetate decarboxylase alpha subunit compare
Psest_1260 -2.2 -8.6 type IV pilus biogenesis/stability protein PilW compare
Psest_4086 -2.1 -10.1 Transcriptional regulator compare
Psest_0281 -2.1 -7.5 Dynamin family. compare
Psest_2104 -2.1 -3.2 IscR-regulated protein YhgI compare
Psest_0718 -2.1 -5.6 nicotinate-nucleotide pyrophosphorylase compare
Psest_0498 -2.0 -1.8 ribosome small subunit-dependent GTPase A compare
Psest_2945 -2.0 -1.5 septum site-determining protein MinC compare
Psest_0951 -2.0 -10.0 FAD/FMN-containing dehydrogenases compare
Psest_0267 -2.0 -11.7 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_1065 -2.0 -2.1 hypothetical protein compare
Psest_3988 -2.0 -6.8 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0138 -1.9 -13.3 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_2863 -1.9 -6.6 Transcriptional regulator compare
Psest_3720 -1.9 -14.5 penicillin-binding protein, 1A family compare
Psest_2538 -1.9 -1.7 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1704 -1.8 -1.8 Dehydrogenases (flavoproteins) compare
Psest_3717 -1.8 -8.3 Tfp pilus assembly protein PilO compare
Psest_3322 -1.8 -13.4 TIGR02099 family protein compare
Psest_4191 -1.8 -2.6 Transcriptional regulator compare
Psest_0477 -1.7 -11.2 thiamine biosynthesis protein ThiC compare
Psest_3716 -1.7 -10.0 Tfp pilus assembly protein PilP compare
Psest_1724 -1.7 -2.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2090 -1.7 -3.2 Protein of unknown function (DUF2970). compare
Psest_3288 -1.7 -11.2 type IV-A pilus assembly ATPase PilB compare
Psest_4298 -1.7 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0137 -1.6 -9.4 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3323 -1.6 -3.8 ribonuclease, Rne/Rng family compare
Psest_0120 -1.6 -6.0 hypothetical protein compare
Psest_0536 -1.6 -3.9 thiamine-phosphate pyrophosphorylase compare
Psest_1824 -1.6 -4.1 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1695 -1.6 -3.6 Tfp pilus assembly protein PilZ compare
Psest_0296 -1.6 -8.0 glutathione synthetase, prokaryotic compare
Psest_0955 -1.6 -3.2 D,L-lactate:H+ symporter (from data) compare
Psest_0136 -1.6 -11.6 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_4345 -1.6 -8.1 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1167 -1.6 -1.1 hypothetical protein compare
Psest_3766 -1.6 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1947 -1.5 -1.1 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0632 -1.5 -2.9 hypothetical protein compare
Psest_1920 -1.5 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3719 -1.5 -10.9 type IV pilus assembly protein PilM compare
Psest_3718 -1.5 -6.9 Tfp pilus assembly protein PilN compare
Psest_2809 -1.5 -3.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0212 -1.5 -1.4 exodeoxyribonuclease V, gamma subunit compare
Psest_2766 -1.5 -1.0 hypothetical protein compare
Psest_4363 -1.5 -7.8 ATPases involved in chromosome partitioning compare
Psest_2580 -1.5 -4.6 Uncharacterized membrane protein, required for colicin V production compare
Psest_4396 -1.5 -7.4 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3573 -1.5 -4.1 dTDP-4-dehydrorhamnose reductase compare
Psest_1809 -1.4 -10.6 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1686 -1.4 -3.7 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3419 -1.4 -6.9 Predicted transcriptional regulators compare
Psest_2645 -1.4 -6.9 Transcriptional regulator compare
Psest_3715 -1.4 -10.9 type IV pilus secretin (or competence protein) PilQ compare
Psest_4297 -1.4 -7.9 PAS domain S-box compare
Psest_0139 -1.4 -4.5 ABC-type histidine transport system, ATPase component compare
Psest_0537 -1.4 -1.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0491 -1.3 -8.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0708 -1.3 -1.7 outer membrane assembly lipoprotein YfiO compare
Psest_0182 -1.3 -4.2 glycine cleavage system H protein compare
Psest_3645 -1.3 -8.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_4049 -1.3 -1.3 hypothetical protein compare
Psest_2651 -1.3 -3.6 DNA topoisomerase I, bacterial compare
Psest_4252 -1.3 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_3123 -1.3 -2.6 dihydroorotase, homodimeric type compare
Psest_0263 -1.2 -6.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3910 -1.2 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0831 -1.2 -0.9 hypothetical protein compare
Psest_1679 -1.2 -1.3 ribonuclease, Rne/Rng family compare
Psest_0533 -1.2 -5.0 Sel1 repeat. compare
Psest_1277 -1.2 -7.4 2-isopropylmalate synthase, yeast type compare
Psest_3535 -1.2 -2.4 hypothetical protein compare
Psest_4250 -1.2 -7.3 hypothetical protein compare
Psest_2850 -1.2 -1.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0516 -1.2 -7.1 D-alanyl-D-alanine carboxypeptidase compare
Psest_4124 -1.2 -3.3 hypothetical protein compare
Psest_2967 -1.2 -3.7 flagellar basal-body rod protein FlgC compare
Psest_1031 -1.1 -7.0 Uncharacterized protein conserved in bacteria compare
Psest_3637 -1.1 -2.1 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_4110 -1.1 -7.6 Deoxycytidylate deaminase compare
Psest_1302 -1.1 -4.2 Predicted thioesterase compare
Psest_1424 -1.1 -1.9 Lipoate-protein ligase A compare
Psest_3146 -1.1 -1.4 hypothetical protein compare
Psest_0442 -1.1 -4.0 ATPases of the AAA+ class compare
Psest_3918 -1.1 -6.2 hypothetical protein compare
Psest_2327 -1.1 -3.8 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_1054 -1.1 -4.2 Diaminopimelate decarboxylase compare
Psest_4097 -1.1 -6.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1183 -1.1 -1.6 hydroxyisourate hydrolase compare
Psest_3178 -1.1 -3.1 formyltetrahydrofolate deformylase compare
Psest_0300 -1.0 -5.8 Methyl-accepting chemotaxis protein compare
Psest_2975 -1.0 -2.6 tRNA_Arg_CCT compare
Psest_0260 -1.0 -1.1 Cell division protein compare
Psest_2243 -1.0 -0.9 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2458 -1.0 -1.8 MoxR-like ATPases compare
Psest_1052 -1.0 -2.9 Uncharacterized protein involved in chromosome partitioning compare
Psest_3960 -1.0 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2848 -1.0 -2.4 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1200 -1.0 -4.8 putative urate catabolism protein compare
Psest_1743 -1.0 -4.9 Chemotaxis protein histidine kinase and related kinases compare
Psest_1405 -1.0 -5.4 hypothetical protein compare
Psest_1750 -1.0 -2.0 Protein of unknown function (DUF2802). compare
Psest_1511 -1.0 -3.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0691 -1.0 -6.0 ribonuclease R compare
Psest_0915 -1.0 -4.1 hypothetical protein compare
Psest_0589 -1.0 -6.4 Uncharacterized protein conserved in bacteria compare
Psest_4017 -1.0 -8.7 hypothetical protein compare
Psest_1749 -1.0 -4.0 Chemotaxis signal transduction protein compare
Psest_1292 -0.9 -5.7 monothiol glutaredoxin, Grx4 family compare
Psest_1447 -0.9 -2.7 Putative threonine efflux protein compare
Psest_1103 -0.9 -2.5 GTP-binding protein YchF compare
Psest_1777 -0.9 -4.5 hypothetical protein compare
Psest_0327 -0.9 -4.0 Transcriptional regulator compare
Psest_3039 -0.9 -1.3 periplasmic nitrate reductase, NapE protein compare
Psest_4070 -0.9 -5.1 PAS domain S-box compare
Psest_4350 -0.9 -4.9 Transcriptional regulators of sugar metabolism compare
Psest_3187 -0.9 -3.6 hypothetical protein compare
Psest_0884 -0.9 -6.2 Toxin with endonuclease activity YhaV. compare
Psest_2648 -0.9 -1.8 hypothetical protein compare
Psest_2503 -0.9 -3.9 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment