Experiment set7S443 for Methanococcus maripaludis JJ

Compare to:

McCas_formate_complete sodium nitrite 0.416666666666667 mM

200 most important genes:

  gene name fitness t score description  
MMJJ_RS07505 -4.9 -0.5 DNA-directed RNA polymerase subunit K compare
MMJJ_RS03490 -4.6 -1.0 ribonuclease VapC compare
MMJJ_RS07960 -4.5 -1.1 quinolinate synthase NadA compare
MMJJ_RS09295 -4.3 -0.5 hypothetical protein compare
MMJJ_RS04970 -4.3 -0.9 DUF655 domain-containing protein compare
MMJJ_RS00050 -4.2 -6.9 AAA family ATPase compare
MMJJ_RS00035 -4.2 -17.3 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS08535 -4.1 -1.3 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS04485 -4.1 -5.2 riboflavin synthase compare
MMJJ_RS00045 -4.0 -11.8 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS04595 -4.0 -2.6 hypothetical protein compare
MMJJ_RS00935 -4.0 -10.4 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS03270 -4.0 -0.9 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00040 -3.9 -6.0 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS04755 -3.9 -9.9 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMJJ_RS02040 -3.8 -1.0 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS00055 -3.8 -6.5 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS00060 -3.8 -14.2 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS04475 -3.8 -2.1 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS03185 -3.7 -0.6 alanine--tRNA ligase compare
MMJJ_RS06915 -3.7 -11.0 helix-turn-helix domain-containing protein compare
MMJJ_RS00065 -3.6 -8.5 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS09175 -3.5 -0.5 anthranilate synthase component I compare
MMJJ_RS05765 -3.5 -0.5 flagellar protein E compare
MMJJ_RS04975 -3.5 -0.9 glycosyltransferase family 4 protein compare
MMJJ_RS02045 -3.5 -0.9 molybdenum cofactor guanylyltransferase compare
MMJJ_RS05575 -3.5 -1.7 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS06660 -3.5 -5.8 DUF1188 domain-containing protein compare
MMJJ_RS06375 -3.5 -1.6 UbiX family flavin prenyltransferase compare
MMJJ_RS00075 -3.5 -8.4 AAA family ATPase compare
MMJJ_RS06180 -3.5 -1.1 tryptophan--tRNA ligase compare
MMJJ_RS07975 -3.5 -6.7 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS01865 -3.4 -3.4 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS00370 -3.4 -0.7 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS00270 -3.4 -1.0 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS06600 -3.3 -0.8 DUF555 domain-containing protein compare
MMJJ_RS05065 -3.3 -1.7 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS05380 -3.3 -0.7 hypothetical protein compare
MMJJ_RS05535 -3.3 -9.6 hypothetical protein compare
MMJJ_RS01880 -3.3 -1.3 RlmE family RNA methyltransferase compare
MMJJ_RS00080 -3.2 -11.9 DUF166 domain-containing protein compare
MMJJ_RS04750 -3.2 -6.3 5,10-methenyltetrahydromethanopterin hydrogenase compare
MMJJ_RS08430 -3.2 -4.8 small nuclear ribonucleoprotein compare
MMJJ_RS04760 -3.2 -12.1 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS08035 -3.1 -4.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS07950 -3.1 -0.9 4Fe-4S binding protein compare
MMJJ_RS08170 -3.1 -0.9 diaminopimelate decarboxylase compare
MMJJ_RS09375 -3.1 -0.6 hypothetical protein compare
MMJJ_RS06875 -3.1 -1.0 hypothetical protein compare
MMJJ_RS00285 -3.0 -11.4 UPF0254 family protein compare
MMJJ_RS07955 -3.0 -7.8 ThiF family adenylyltransferase compare
MMJJ_RS05720 -3.0 -0.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS08320 -3.0 -0.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS06860 -3.0 -0.9 hypothetical protein compare
MMJJ_RS08020 -3.0 -6.5 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08080 -3.0 -6.6 TIGR00300 family protein compare
MMJJ_RS07415 -3.0 -1.1 polyprenyl diphosphate synthase compare
MMJJ_RS07035 -3.0 -0.7 glycosyl transferase compare
MMJJ_RS07245 -2.9 -1.3 amidohydrolase family protein compare
MMJJ_RS04800 -2.9 -1.9 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS05360 -2.9 -3.7 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS00215 -2.9 -0.8 CCA tRNA nucleotidyltransferase compare
MMJJ_RS00345 -2.8 -7.6 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS03875 -2.8 -1.3 CBS domain-containing protein compare
MMJJ_RS06155 -2.8 -1.2 phosphatidylglycerophosphatase A compare
MMJJ_RS03920 -2.8 -11.4 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS07190 -2.8 -1.9 RtcB family protein compare
MMJJ_RS05770 -2.8 -1.1 flagellar protein D compare
MMJJ_RS08335 -2.8 -0.6 ABC transporter ATP-binding protein compare
MMJJ_RS07715 -2.8 -1.5 UbiD family decarboxylase compare
MMJJ_RS06225 -2.8 -0.7 adenosylmethionine decarboxylase compare
MMJJ_RS06695 -2.8 -1.1 amidohydrolase compare
MMJJ_RS01830 -2.8 -1.3 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS01355 -2.8 -1.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS08810 -2.7 -0.4 DUF4040 domain-containing protein compare
MMJJ_RS00475 -2.7 -1.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS00355 -2.7 -1.1 ribonuclease P protein component 4 compare
MMJJ_RS00195 -2.7 -1.3 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS02200 -2.7 -4.1 chorismate pyruvate-lyase family protein compare
MMJJ_RS04730 -2.7 -0.8 tyrosine decarboxylase MfnA compare
MMJJ_RS03170 -2.7 -4.1 DUF5612 domain-containing protein compare
MMJJ_RS02090 -2.7 -1.1 tyramine--L-glutamate ligase compare
MMJJ_RS05070 -2.7 -0.6 DNA primase catalytic subunit PriS compare
MMJJ_RS04655 -2.7 -3.4 FAD-dependent oxidoreductase compare
MMJJ_RS00125 -2.7 -0.8 KEOPS complex subunit Cgi121 compare
MMJJ_RS00360 -2.7 -0.8 adenosylhomocysteinase compare
MMJJ_RS08840 -2.6 -1.8 calcium/sodium antiporter compare
MMJJ_RS07360 -2.6 -0.7 TIGR00269 family protein compare
MMJJ_RS08795 -2.6 -1.1 phosphoglucosamine mutase compare
MMJJ_RS03615 -2.6 -0.7 cobalt-precorrin-8 methylmutase compare
MMJJ_RS08500 -2.6 -4.2 L-sulfolactate dehydrogenase compare
MMJJ_RS03785 -2.6 -0.7 hypothetical protein compare
MMJJ_RS00600 -2.6 -1.0 hydroxymethylbilane synthase compare
MMJJ_RS00210 -2.6 -0.9 DUF530 family protein compare
MMJJ_RS09035 -2.6 -3.4 OB-fold nucleic acid binding domain-containing protein compare
MMJJ_RS07945 -2.5 -0.7 4Fe-4S binding protein compare
MMJJ_RS03110 -2.5 -1.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS07155 -2.5 -6.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS00205 -2.5 -1.8 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS08625 -2.5 -3.8 magnesium/cobalt transporter CorA compare
MMJJ_RS09190 -2.5 -0.5 tryptophan synthase subunit beta compare
MMJJ_RS04200 -2.5 -1.9 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS05590 -2.4 -1.0 homoserine dehydrogenase compare
MMJJ_RS06665 -2.4 -3.9 DUF3236 domain-containing protein compare
MMJJ_RS03115 -2.4 -3.0 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS05420 -2.4 -2.0 DNA-directed DNA polymerase II small subunit compare
MMJJ_RS01500 -2.4 -4.9 transcriptional regulator compare
MMJJ_RS00030 -2.4 -9.3 thymidylate synthase compare
MMJJ_RS04700 -2.4 -2.2 deoxyhypusine synthase compare
MMJJ_RS07720 -2.4 -0.5 UPF0058 family protein compare
MMJJ_RS07470 -2.4 -0.5 50S ribosome-binding GTPase compare
MMJJ_RS08585 -2.4 -4.4 M42 family metallopeptidase compare
MMJJ_RS03620 -2.3 -1.0 DUF2097 domain-containing protein compare
MMJJ_RS06910 -2.3 -0.6 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06750 -2.3 -0.6 homoaconitase large subunit compare
MMJJ_RS04520 -2.3 -1.0 coenzyme F430 synthase compare
MMJJ_RS04615 -2.3 -1.8 methanogenesis marker 3 protein compare
MMJJ_RS06835 -2.3 -8.7 4Fe-4S binding protein compare
MMJJ_RS01530 -2.3 -1.7 YwbE family protein compare
MMJJ_RS05445 -2.3 -0.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS06250 -2.3 -0.9 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS05610 -2.3 -0.9 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS06255 -2.3 -3.6 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS05930 -2.2 -0.5 cell division protein SepF compare
MMJJ_RS05935 -2.2 -0.7 Era-like GTP-binding protein compare
MMJJ_RS05415 -2.2 -0.5 hypothetical protein compare
MMJJ_RS07410 -2.2 -1.3 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS04180 -2.2 -1.3 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS06110 -2.2 -0.6 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS05190 -2.2 -3.1 gamma carbonic anhydrase family protein compare
MMJJ_RS06390 -2.2 -0.5 NADPH-dependent F420 reductase compare
MMJJ_RS00550 -2.2 -6.7 AIR synthase-related protein compare
MMJJ_RS07000 -2.2 -0.5 TrkH family potassium uptake protein compare
MMJJ_RS07345 -2.2 -4.3 homocysteine biosynthesis protein compare
MMJJ_RS02035 -2.2 -2.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS06930 -2.2 -1.0 type II methionyl aminopeptidase compare
MMJJ_RS05995 -2.2 -0.9 ATP-binding cassette domain-containing protein compare
MMJJ_RS04565 -2.2 -1.4 sirohydrochlorin nickelochelatase compare
MMJJ_RS04790 -2.1 -1.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS05155 -2.1 -2.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS08340 -2.1 -2.4 archaeoflavoprotein AfpA compare
MMJJ_RS03895 -2.1 -0.8 hydrogenase expression/formation protein HypE compare
MMJJ_RS01415 -2.1 -0.6 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS03060 -2.1 -0.6 methanogenesis marker 7 protein compare
MMJJ_RS06215 -2.1 -2.0 agmatinase compare
MMJJ_RS07785 -2.1 -0.6 fumarate reductase subunit A compare
MMJJ_RS00570 -2.1 -0.6 ribonuclease P compare
MMJJ_RS01820 -2.1 -2.3 MJ1244 family protein compare
MMJJ_RS01405 -2.1 -0.4 proline--tRNA ligase compare
MMJJ_RS08660 -2.0 -1.4 acetylornithine transaminase compare
MMJJ_RS09030 -2.0 -9.6 hypothetical protein compare
MMJJ_RS07705 -2.0 -0.7 GTP-binding protein EngB compare
MMJJ_RS08010 -2.0 -3.9 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS02935 -2.0 -1.4 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS05780 -2.0 -1.2 flagellin compare
MMJJ_RS03150 -1.9 -2.1 2-phospho-L-lactate transferase compare
MMJJ_RS03240 -1.9 -1.1 histone family protein compare
MMJJ_RS00580 -1.9 -0.5 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS03810 -1.9 -1.0 AIR synthase-related protein compare
MMJJ_RS06220 -1.9 -2.6 polyamine aminopropyltransferase compare
MMJJ_RS03190 -1.9 -1.0 phosphopyruvate hydratase compare
MMJJ_RS05280 -1.9 -0.4 hypothetical protein compare
MMJJ_RS07380 -1.9 -4.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS08490 -1.9 -1.9 rubrerythrin family protein compare
MMJJ_RS03840 -1.9 -0.8 DHH family phosphoesterase compare
MMJJ_RS06935 -1.9 -4.9 GTP-binding protein compare
MMJJ_RS08155 -1.8 -1.2 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS04050 -1.8 -0.5 dihydroneopterin aldolase family protein compare
MMJJ_RS04875 -1.8 -0.4 tRNA-Lys compare
MMJJ_RS06270 -1.8 -3.9 dethiobiotin synthase compare
MMJJ_RS07350 -1.8 -1.2 4Fe-4S binding protein compare
MMJJ_RS08620 -1.8 -1.9 DUF373 family protein compare
MMJJ_RS04150 -1.8 -1.1 DUF5379 domain-containing protein compare
MMJJ_RS08370 -1.8 -2.8 hypothetical protein compare
MMJJ_RS05375 -1.8 -8.7 radical SAM protein compare
MMJJ_RS07275 -1.8 -0.6 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS06030 -1.8 -2.4 4Fe-4S binding protein compare
MMJJ_RS05195 -1.8 -2.4 hypothetical protein compare
MMJJ_RS05490 -1.8 -0.8 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS01750 -1.8 -0.7 ferrous iron transport protein A compare
MMJJ_RS01360 -1.8 -0.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06825 -1.8 -6.5 4Fe-4S binding protein compare
MMJJ_RS07915 -1.8 -3.5 CBS domain-containing protein compare
MMJJ_RS06175 -1.8 -0.6 DUF1743 domain-containing protein compare
MMJJ_RS05170 -1.8 -5.2 Nif3-like dinuclear metal center hexameric protein compare
MMJJ_RS03865 -1.8 -0.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS09130 -1.8 -0.5 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS01925 -1.7 -3.9 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMJJ_RS01345 -1.7 -1.8 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS06635 -1.7 -7.8 4Fe-4S binding protein compare
MMJJ_RS09265 -1.7 -1.2 hypothetical protein compare
MMJJ_RS06485 -1.7 -0.9 phosphoglycerate kinase compare
MMJJ_RS00450 -1.7 -0.6 DUF126 domain-containing protein compare
MMJJ_RS03140 -1.7 -4.5 tRNA-dihydrouridine synthase compare
MMJJ_RS06725 -1.7 -5.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS07370 -1.7 -2.8 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS05710 -1.7 -2.1 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS03635 -1.7 -1.2 methionine--tRNA ligase compare
MMJJ_RS03660 -1.6 -0.9 DUF447 family protein compare
MMJJ_RS01285 -1.6 -2.9 CopG family ribbon-helix-helix protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in stress experiments

For stress Sodium nitrite across organisms