Experiment set7S400 for Methanococcus maripaludis JJ

Compare to:

McCas_formate_complete sodium nitrite 0.125 mM

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00370 -4.2 -1.6 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS00270 -4.2 -2.3 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS00210 -3.9 -1.7 DUF530 family protein compare
MMJJ_RS00355 -3.9 -2.0 ribonuclease P protein component 4 compare
MMJJ_RS09375 -3.9 -1.3 hypothetical protein compare
MMJJ_RS02040 -3.9 -2.0 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS08625 -3.8 -3.7 magnesium/cobalt transporter CorA compare
MMJJ_RS06875 -3.8 -2.3 hypothetical protein compare
MMJJ_RS03875 -3.6 -2.9 CBS domain-containing protein compare
MMJJ_RS03200 -3.6 -1.5 uroporphyrinogen-III synthase compare
MMJJ_RS04975 -3.6 -2.1 glycosyltransferase family 4 protein compare
MMJJ_RS05065 -3.5 -3.2 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS06695 -3.5 -2.3 amidohydrolase compare
MMJJ_RS03785 -3.5 -1.8 hypothetical protein compare
MMJJ_RS03190 -3.4 -1.9 phosphopyruvate hydratase compare
MMJJ_RS03965 -3.4 -1.6 DNA-directed RNA polymerase subunit L compare
MMJJ_RS08795 -3.3 -2.3 phosphoglucosamine mutase compare
MMJJ_RS03815 -3.3 -1.3 nascent polypeptide-associated complex protein compare
MMJJ_RS05930 -3.3 -1.4 cell division protein SepF compare
MMJJ_RS04800 -3.3 -4.4 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS00275 -3.2 -1.4 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS00570 -3.2 -1.4 ribonuclease P compare
MMJJ_RS05360 -3.2 -5.9 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS00040 -3.1 -8.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS08840 -3.1 -3.9 calcium/sodium antiporter compare
MMJJ_RS06180 -3.1 -3.1 tryptophan--tRNA ligase compare
MMJJ_RS06155 -3.0 -4.2 phosphatidylglycerophosphatase A compare
MMJJ_RS01880 -3.0 -2.5 RlmE family RNA methyltransferase compare
MMJJ_RS02935 -3.0 -2.4 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS00125 -3.0 -2.1 KEOPS complex subunit Cgi121 compare
MMJJ_RS00475 -3.0 -2.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS02045 -2.9 -2.1 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06625 -2.8 -1.1 pyruvate synthase subunit PorB compare
MMJJ_RS05995 -2.8 -2.0 ATP-binding cassette domain-containing protein compare
MMJJ_RS06250 -2.8 -2.3 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS07380 -2.8 -7.0 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS04615 -2.8 -4.1 methanogenesis marker 3 protein compare
MMJJ_RS02920 -2.7 -1.5 30S ribosomal protein S27ae compare
MMJJ_RS04200 -2.7 -4.5 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06390 -2.7 -1.5 NADPH-dependent F420 reductase compare
MMJJ_RS01820 -2.7 -4.7 MJ1244 family protein compare
MMJJ_RS08020 -2.7 -6.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07950 -2.7 -2.2 4Fe-4S binding protein compare
MMJJ_RS00050 -2.7 -8.4 AAA family ATPase compare
MMJJ_RS06855 -2.6 -0.9 DUF2104 domain-containing protein compare
MMJJ_RS08320 -2.6 -1.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS03065 -2.6 -10.3 CBS domain-containing protein compare
MMJJ_RS01815 -2.6 -3.9 DUF134 domain-containing protein compare
MMJJ_RS04730 -2.6 -1.8 tyrosine decarboxylase MfnA compare
MMJJ_RS02090 -2.6 -3.6 tyramine--L-glutamate ligase compare
MMJJ_RS06110 -2.6 -1.7 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS05420 -2.6 -2.8 DNA-directed DNA polymerase II small subunit compare
MMJJ_RS06915 -2.5 -11.4 helix-turn-helix domain-containing protein compare
MMJJ_RS06750 -2.5 -1.5 homoaconitase large subunit compare
MMJJ_RS04970 -2.5 -1.7 DUF655 domain-containing protein compare
MMJJ_RS03895 -2.5 -1.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS03580 -2.5 -1.8 TIGR00303 family protein compare
MMJJ_RS03140 -2.5 -9.2 tRNA-dihydrouridine synthase compare
MMJJ_RS00580 -2.5 -1.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS06760 -2.5 -3.7 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS07720 -2.5 -1.3 UPF0058 family protein compare
MMJJ_RS01810 -2.5 -1.4 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS04655 -2.5 -5.8 FAD-dependent oxidoreductase compare
MMJJ_RS03660 -2.4 -2.2 DUF447 family protein compare
MMJJ_RS04675 -2.4 -4.3 thiamine pyrophosphate-binding protein compare
MMJJ_RS05135 -2.4 -1.2 50S ribosomal protein L18Ae compare
MMJJ_RS03615 -2.4 -2.0 cobalt-precorrin-8 methylmutase compare
MMJJ_RS03840 -2.4 -2.8 DHH family phosphoesterase compare
MMJJ_RS02200 -2.4 -7.6 chorismate pyruvate-lyase family protein compare
MMJJ_RS05650 -2.4 -1.3 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS01600 -2.4 -1.2 radical SAM protein compare
MMJJ_RS01870 -2.4 -1.0 methanogenesis marker 15 protein compare
MMJJ_RS00035 -2.4 -12.2 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS08430 -2.4 -4.6 small nuclear ribonucleoprotein compare
MMJJ_RS08500 -2.3 -4.8 L-sulfolactate dehydrogenase compare
MMJJ_RS00045 -2.3 -11.4 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS08095 -2.3 -3.2 cobyric acid synthase CobQ compare
MMJJ_RS08335 -2.3 -1.7 ABC transporter ATP-binding protein compare
MMJJ_RS07245 -2.3 -3.5 amidohydrolase family protein compare
MMJJ_RS00055 -2.3 -8.8 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS08330 -2.3 -1.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS00060 -2.2 -12.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS05445 -2.2 -1.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS05535 -2.2 -9.7 hypothetical protein compare
MMJJ_RS04790 -2.2 -2.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS09175 -2.2 -1.0 anthranilate synthase component I compare
MMJJ_RS06705 -2.2 -2.9 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS06725 -2.1 -10.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06860 -2.1 -2.4 hypothetical protein compare
MMJJ_RS05950 -2.1 -1.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS05155 -2.1 -4.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS05575 -2.1 -2.2 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS05655 -2.1 -5.8 HisA/HisF family protein compare
MMJJ_RS00080 -2.1 -9.8 DUF166 domain-containing protein compare
MMJJ_RS05415 -2.1 -1.2 hypothetical protein compare
MMJJ_RS03670 -2.1 -2.3 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS01355 -2.1 -2.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS06240 -2.1 -1.6 dihydropteroate synthase-like protein compare
MMJJ_RS05330 -2.1 -1.1 DNA polymerase II large subunit compare
MMJJ_RS04995 -2.1 -4.7 Tfx family DNA-binding protein compare
MMJJ_RS07670 -2.1 -11.4 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS01755 -2.0 -1.0 ferrous iron transport protein B compare
MMJJ_RS07665 -2.0 -13.7 formate dehydrogenase subunit alpha compare
MMJJ_RS00425 -2.0 -2.9 hypothetical protein compare
MMJJ_RS09030 -2.0 -10.5 hypothetical protein compare
MMJJ_RS06255 -2.0 -6.1 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS07345 -2.0 -4.8 homocysteine biosynthesis protein compare
MMJJ_RS07945 -2.0 -1.9 4Fe-4S binding protein compare
MMJJ_RS06840 -2.0 -2.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS07960 -2.0 -1.9 quinolinate synthase NadA compare
MMJJ_RS04150 -1.9 -2.2 DUF5379 domain-containing protein compare
MMJJ_RS06490 -1.9 -1.0 methanogenesis marker 2 protein compare
MMJJ_RS09035 -1.9 -4.0 OB-fold nucleic acid binding domain-containing protein compare
MMJJ_RS07275 -1.9 -1.8 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS07410 -1.9 -2.3 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS05610 -1.9 -3.2 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS03765 -1.9 -4.6 hypothetical protein compare
MMJJ_RS05070 -1.9 -1.6 DNA primase catalytic subunit PriS compare
MMJJ_RS01750 -1.9 -1.4 ferrous iron transport protein A compare
MMJJ_RS07590 -1.9 -8.2 flap endonuclease-1 compare
MMJJ_RS07715 -1.9 -2.0 UbiD family decarboxylase compare
MMJJ_RS04985 -1.8 -2.6 glutamyl-tRNA reductase compare
MMJJ_RS05590 -1.8 -1.3 homoserine dehydrogenase compare
MMJJ_RS00030 -1.8 -8.4 thymidylate synthase compare
MMJJ_RS07630 -1.8 -7.1 hypothetical protein compare
MMJJ_RS05620 -1.8 -2.5 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS03710 -1.8 -5.0 DUF2111 domain-containing protein compare
MMJJ_RS04685 -1.8 -5.8 carbamoyltransferase HypF compare
MMJJ_RS07190 -1.8 -3.2 RtcB family protein compare
MMJJ_RS08170 -1.8 -1.7 diaminopimelate decarboxylase compare
MMJJ_RS03270 -1.8 -1.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS06485 -1.8 -1.8 phosphoglycerate kinase compare
MMJJ_RS08340 -1.8 -3.3 archaeoflavoprotein AfpA compare
MMJJ_RS05190 -1.8 -4.2 gamma carbonic anhydrase family protein compare
MMJJ_RS09130 -1.8 -1.1 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS01690 -1.8 -1.8 methanogenesis marker 12 protein compare
MMJJ_RS05380 -1.8 -1.2 hypothetical protein compare
MMJJ_RS00195 -1.8 -2.2 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS07660 -1.7 -7.2 carbonic anhydrase compare
MMJJ_RS05560 -1.7 -3.1 30S ribosomal protein S27e compare
MMJJ_RS08065 -1.7 -1.8 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS08005 -1.7 -10.4 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS05935 -1.7 -1.4 Era-like GTP-binding protein compare
MMJJ_RS08080 -1.7 -6.4 TIGR00300 family protein compare
MMJJ_RS08660 -1.7 -2.2 acetylornithine transaminase compare
MMJJ_RS03110 -1.7 -2.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS00600 -1.7 -2.1 hydroxymethylbilane synthase compare
MMJJ_RS01935 -1.7 -2.0 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS05720 -1.7 -1.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS06865 -1.7 -1.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01865 -1.7 -3.3 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS01765 -1.7 -6.1 winged helix-turn-helix domain-containing protein compare
MMJJ_RS06905 -1.6 -1.2 hypothetical protein compare
MMJJ_RS06730 -1.6 -4.6 ATP-binding cassette domain-containing protein compare
MMJJ_RS00075 -1.6 -5.7 AAA family ATPase compare
MMJJ_RS04475 -1.6 -3.0 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS04485 -1.6 -5.6 riboflavin synthase compare
MMJJ_RS07000 -1.6 -0.9 TrkH family potassium uptake protein compare
MMJJ_RS06835 -1.6 -7.4 4Fe-4S binding protein compare
MMJJ_RS03820 -1.6 -2.1 hydrogenase formation protein HypD compare
MMJJ_RS07425 -1.6 -7.7 MBL fold metallo-hydrolase compare
MMJJ_RS04565 -1.6 -2.3 sirohydrochlorin nickelochelatase compare
MMJJ_RS07875 -1.6 -1.3 FAD-dependent oxidoreductase compare
MMJJ_RS05280 -1.5 -0.7 hypothetical protein compare
MMJJ_RS06660 -1.5 -5.7 DUF1188 domain-containing protein compare
MMJJ_RS04050 -1.5 -0.8 dihydroneopterin aldolase family protein compare
MMJJ_RS03230 -1.5 -2.2 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS05295 -1.5 -7.5 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS07640 -1.5 -11.4 cache domain-containing protein compare
MMJJ_RS02275 -1.5 -2.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08055 -1.5 -4.0 methanogenesis marker 14 protein compare
MMJJ_RS03195 -1.5 -2.9 hypothetical protein compare
MMJJ_RS04760 -1.5 -9.2 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS01410 -1.5 -4.5 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS03655 -1.5 -2.7 replication factor C large subunit compare
MMJJ_RS04870 -1.4 -1.3 tRNA-Asp compare
MMJJ_RS08620 -1.4 -2.6 DUF373 family protein compare
MMJJ_RS04505 -1.4 -3.9 CDC48 family AAA ATPase compare
MMJJ_RS08535 -1.4 -1.8 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS08175 -1.4 -6.2 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS07155 -1.4 -5.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06175 -1.4 -1.2 DUF1743 domain-containing protein compare
MMJJ_RS01405 -1.4 -1.0 proline--tRNA ligase compare
MMJJ_RS07360 -1.4 -0.9 TIGR00269 family protein compare
MMJJ_RS03150 -1.4 -2.6 2-phospho-L-lactate transferase compare
MMJJ_RS01285 -1.4 -3.6 CopG family ribbon-helix-helix protein compare
MMJJ_RS00065 -1.3 -5.3 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS08035 -1.3 -4.4 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS07635 -1.3 -6.3 response regulator transcription factor compare
MMJJ_RS03930 -1.3 -6.6 hypothetical protein compare
MMJJ_RS01280 -1.3 -8.4 hydroxylamine reductase conserved
MMJJ_RS00550 -1.3 -5.1 AIR synthase-related protein compare
MMJJ_RS03115 -1.3 -3.3 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS05765 -1.3 -0.8 flagellar protein E compare
MMJJ_RS08345 -1.3 -8.3 flavodoxin family protein compare
MMJJ_RS05490 -1.3 -1.3 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS07040 -1.3 -0.9 preprotein translocase subunit SecY compare
MMJJ_RS07405 -1.3 -2.6 histone family protein compare
MMJJ_RS07655 -1.3 -7.5 hypothetical protein compare
MMJJ_RS04180 -1.3 -1.7 metalloregulator ArsR/SmtB family transcription factor compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium nitrite in Methanococcus maripaludis JJ

For stress Sodium nitrite across organisms