Experiment set7IT096 for Phaeobacter inhibens DSM 17395

Compare to:

Sodium butyrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c08600 +1.2 8.8 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c36020 +1.2 2.2 putative 3'-5'-exonuclease compare
PGA1_c08590 +1.2 7.9 heme NO binding domain-containing protein compare
PGA1_c35770 +1.1 1.4 putative flagella basal body P-ring formation protein FlgA compare
PGA1_c03880 +1.0 9.0 putative transcriptional activator protein RaiR compare
PGA1_c23500 +0.9 7.7 phosphoenolpyruvate-protein phosphotransferase PtsP compare
PGA1_c01200 +0.9 5.7 putative phosphocarrier, HPr family compare
PGA1_c06670 +0.9 4.1 carbamoyl-phosphate synthase small chain compare
PGA1_c34880 +0.9 7.5 putative response regulator compare
PGA1_c07710 +0.9 1.6 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c33190 +0.9 4.4 putative anti-sigma-B factor antagonist compare
PGA1_c07900 +0.9 6.5 alpha-glucoside transport ATP-binding protein AglK compare
PGA1_c15740 +0.9 1.7 phosphate transport system protein PhoU compare
PGA1_c34650 +0.8 1.5 UPF0090 protein YhbC compare
PGA1_c00680 +0.8 2.6 transcriptional regulator, arsR family compare
PGA1_c24050 +0.8 1.7 hypothetical protein compare
PGA1_c26030 +0.8 2.3 transcriptional regulator, MarR family compare
PGA1_c21060 +0.7 3.8 cold shock protein CspA compare
PGA1_c03390 +0.7 5.1 acetoacetyl-CoA reductase PhaB compare
PGA1_c18380 +0.7 1.2 Phage Head-Tail Attachment. compare
PGA1_c11540 +0.7 1.1 gamma-glutamylputrescine synthetase PuuA compare
PGA1_c36110 +0.7 2.5 monofunctional biosynthetic peptidoglycan transglycosylase MtgA compare
PGA1_262p00610 +0.7 1.0 metallophosphoesterase compare
PGA1_c02050 +0.7 2.5 acetylglutamate kinase ArgB compare
PGA1_c11170 +0.7 1.5 segregation and condensation protein A compare
PGA1_c24770 +0.7 2.0 putative leucine-responsive regulatory protein compare
PGA1_c07860 +0.7 5.3 alpha-glucosides-binding periplasmic protein AglE compare
PGA1_c10730 +0.7 2.3 ribose-5-phosphate isomerase B compare
PGA1_262p00770 +0.6 1.4 putative lytic murein transglycosylase compare
PGA1_c24850 +0.6 2.4 Uncharacterized conserved small protein containing a coiled-coil domain compare
PGA1_c05390 +0.6 2.9 glycosyl transferase compare
PGA1_c18580 +0.6 2.3 hypothetical protein compare
PGA1_78p00500 +0.6 2.5 putative transcriptional regulator compare
PGA1_c07880 +0.6 4.0 alpha-glucoside transport system permease protein AglG compare
PGA1_c05860 +0.6 2.1 holliday junction ATP-dependent DNA helicase RuvA compare
PGA1_c07890 +0.6 4.3 cytoplasmic trehalase (AlgA) (from data) compare
PGA1_c34890 +0.6 4.5 putative histidine-containing phosphotransfer protein compare
PGA1_c18260 +0.6 1.7 phage major tail tube protein compare
PGA1_c04950 +0.6 1.1 GTP-dependent nucleic acid-binding protein EngD compare
PGA1_c16360 +0.6 1.7 putative transriptional regulator, AsnC family compare
PGA1_c07870 +0.6 3.7 alpha-glucoside transport system permease protein AglF compare
PGA1_c02810 +0.5 4.1 P-hydroxybenzoate hydroxylase PobA compare
PGA1_c30000 +0.5 1.7 ATP-dependent Clp protease adaptor protein ClpS compare
PGA1_c13510 +0.5 1.2 hypothetical protein compare
PGA1_c06420 +0.5 2.0 acetyltransferase domain-containing protein compare
PGA1_262p01120 +0.5 1.6 hypothetical protein compare
PGA1_c27660 +0.5 1.9 hypothetical protein compare
PGA1_c00800 +0.5 2.1 hypothetical protein compare
PGA1_c26850 +0.5 1.4 Predicted metal-binding protein compare
PGA1_c02020 +0.5 2.3 Predicted metal-binding protein compare
PGA1_c23980 +0.5 1.7 translation elongation factor P compare
PGA1_c12150 +0.5 3.6 dihydroorotate dehydrogenase PyrD compare
PGA1_c35410 +0.5 1.9 hypothetical protein compare
PGA1_c06330 +0.5 2.0 putative ribosomal-protein-alanine acetyltransferase compare
PGA1_c18340 +0.5 2.0 putative baseplate assembly protein W compare
PGA1_c04900 +0.5 1.9 peptidyl-tRNA hydrolase Pth compare
PGA1_78p00510 +0.5 1.5 multidrug transporter MdtB compare
PGA1_c13750 +0.5 2.0 phosphopantetheine binding protein compare
PGA1_c01170 +0.5 3.2 HPr kinase/phosphorylase-like protein compare
PGA1_262p00720 +0.5 1.2 serine/threonine-protein kinase RsbT-like protein compare
PGA1_c29600 +0.5 2.2 hypothetical protein compare
PGA1_c12660 +0.5 2.9 D-lactate transporter, permease component 2 (from data) compare
PGA1_262p00250 +0.5 1.2 ferritin-like protein compare
PGA1_c02460 +0.5 3.8 hypothetical protein compare
PGA1_c17050 +0.4 0.9 N-acetyl-gamma-glutamyl-phosphate reductase ArgC compare
PGA1_c02450 +0.4 3.2 putative outer membrane efflux protein compare
PGA1_c15660 +0.4 2.4 enoyl-CoA hydratase/isomerase family protein compare
PGA1_c33490 +0.4 1.0 inositol-1-monophosphatase SuhB compare
PGA1_262p01630 +0.4 0.9 hypothetical protein compare
PGA1_c23590 +0.4 1.8 hypothetical protein compare
PGA1_c32670 +0.4 2.0 putative phosphoglycerate mutase family protein compare
PGA1_c10900 +0.4 3.0 putative orotate phosphoribosyltransferase compare
PGA1_262p01020 +0.4 2.4 dipeptide transport system permease protein DppC compare
PGA1_c29760 +0.4 1.8 iojap-like ribosome-associated protein compare
PGA1_262p00030 +0.4 1.9 Glycosyl hydrolases family 16./Hemolysin-type calcium-binding repeat (2 copies). compare
PGA1_262p01165 +0.4 0.9 hypothetical protein compare
PGA1_c14890 +0.4 1.4 Uncharacterized conserved protein compare
PGA1_c11710 +0.4 1.9 transcriptional regulator, LysR family compare
PGA1_c23870 +0.4 2.1 nitrile hydratase subunit beta compare
PGA1_c15760 +0.4 1.6 putative phosphate transport system permease protein PstA compare
PGA1_c03210 +0.4 2.1 branched-chain amino acid transport protein azlD-like protein compare
PGA1_c09090 +0.4 1.2 thiamine biosynthesis protein ThiS compare
PGA1_c20890 +0.4 1.9 Molybdopterin biosynthesis enzyme compare
PGA1_c02440 +0.4 3.2 putative ATP-binding/permease fusion ABC transporter compare
PGA1_65p00170 +0.4 1.9 putative capsular polysaccharide biosynthesis protein compare
PGA1_c31720 +0.4 2.3 hypothetical protein compare
PGA1_c19200 +0.4 0.9 Predicted Fe-S protein compare
PGA1_c11430 +0.4 1.9 hypothetical protein compare
PGA1_c29430 +0.4 1.2 3-mercaptopyruvate sulfurtransferase compare
PGA1_c13640 +0.4 2.0 Phosphopantetheine attachment site. compare
PGA1_c18350 +0.4 1.8 putative baseplate assembly protein V compare
PGA1_c12830 +0.4 2.0 transcriptional regulator, TetR family compare
PGA1_c09250 +0.4 2.1 Protein of unknown function (DUF2867). compare
PGA1_c03060 +0.4 2.6 aspartate carbamoyltransferase PyrB compare
PGA1_c12960 +0.4 1.9 putative extracellular solute-binding protein compare
PGA1_262p00380 +0.4 1.2 sugar transferase compare
PGA1_c15710 +0.4 1.4 acyl-CoA dehydrogenase compare
PGA1_c09580 +0.4 1.4 antibiotic biosynthesis monooxygenase-like protein compare
PGA1_c10580 +0.4 1.8 ribonuclease J 1 compare
PGA1_c33970 +0.4 1.5 putative chloramphenicol phosphotransferase-like protein compare
PGA1_c19630 +0.4 2.2 oxidoreductase, molybdopterin binding compare
PGA1_c15590 +0.4 3.4 putative transcriptional activator protein compare
PGA1_c17020 +0.4 1.1 Protein of unknown function (DUF3154). compare
PGA1_c03290 +0.4 1.5 transcription elongation factor GreA compare
PGA1_c15220 +0.4 1.5 inosine-5'-monophosphate dehydrogenase GuaB compare
PGA1_c31930 +0.4 2.7 putative transporter, MFS family compare
PGA1_78p00170 +0.4 0.9 putative sn-glycerol-3-phosphate transport system permease protein UgpA compare
PGA1_c29120 +0.4 0.9 hypothetical protein compare
PGA1_c12730 +0.4 0.9 TIGR01244 family protein compare
PGA1_c22370 +0.4 1.6 hypothetical protein compare
PGA1_c16140 +0.4 2.6 putative lipoprotein transport protein compare
PGA1_c17030 +0.4 1.0 peptidoglycan binding domain-containing protein compare
PGA1_c21160 +0.4 1.9 putative metallopeptidase compare
PGA1_262p00370 +0.4 1.9 putative polysaccharide synthase compare
PGA1_c15790 +0.4 1.4 putative phosphate transporter, phosphate-binding protein compare
PGA1_c12420 +0.4 1.9 cytochrome c SoxX compare
PGA1_78p00270 +0.4 1.2 lipoyl synthase LipA compare
PGA1_c07650 +0.4 2.5 hypothetical protein compare
PGA1_c19100 +0.4 0.9 hypothetical protein compare
PGA1_c26040 +0.4 1.5 hypothetical protein compare
PGA1_c28880 +0.4 2.0 hypothetical protein compare
PGA1_c04310 +0.3 0.8 Protein of unknown function (DUF1045). compare
PGA1_262p01000 +0.3 1.0 dipeptide transport ATP-binding protein DppF compare
PGA1_c26300 +0.3 1.3 ABC transporter, ATP-binding protein compare
PGA1_c05530 +0.3 1.3 putative allantoin catabolism protein compare
PGA1_c04220 +0.3 1.8 putative phosphonate metabolism compare
PGA1_c11470 +0.3 0.8 acetyltransferase domain-containing protein compare
PGA1_c12160 +0.3 1.7 Uncharacterized protein conserved in bacteria compare
PGA1_c12670 +0.3 2.3 D-lactate transporter, substrate binding component (from data) compare
PGA1_c12320 +0.3 1.9 Uncharacterized protein conserved in bacteria compare
PGA1_c07160 +0.3 2.2 FOG: WD40 repeat compare
PGA1_c20010 +0.3 2.8 glutamate-ammonia-ligase adenylyltransferase GlnE compare
PGA1_c24820 +0.3 1.9 phenazine biosynthesis protein compare
PGA1_c18080 +0.3 2.1 hypothetical protein compare
PGA1_65p00450 +0.3 1.6 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c05380 +0.3 2.3 hypothetical protein compare
PGA1_c32520 +0.3 2.0 Protein of unknown function (DUF2938). compare
PGA1_262p00920 +0.3 1.1 Membrane proteins related to metalloendopeptidases compare
PGA1_c32450 +0.3 2.1 orotidine 5'-phosphate decarboxylase PyrF compare
PGA1_c02430 +0.3 2.3 type I secretion membrane fusion protein, HlyD family compare
PGA1_c08840 +0.3 1.8 hypothetical protein compare
PGA1_c13370 +0.3 0.3 Methionine synthase component, methyltransferase domain (EC:2.1.1.13) (from data) compare
PGA1_c09470 +0.3 1.6 putative ATP-binding protein compare
PGA1_c01960 +0.3 1.3 putative hydrolase compare
PGA1_c09260 +0.3 1.2 Uncharacterized conserved protein compare
PGA1_78p00540 +0.3 1.2 hypothetical protein compare
PGA1_c31910 +0.3 1.8 YGGT family. compare
PGA1_c26320 +0.3 1.7 hypothetical protein compare
PGA1_262p01250 +0.3 0.6 transcriptional regulator, crp family compare
PGA1_c04010 +0.3 0.6 putative universal stress protein compare
PGA1_262p01310 +0.3 1.8 putative flavin-containing monooxygenase compare
PGA1_262p00470 +0.3 1.2 Plasmid stabilization system protein compare
PGA1_c12550 +0.3 1.1 hypothetical protein compare
PGA1_c26830 +0.3 1.6 phenylacetic acid degradation protein PaaZ compare
PGA1_c31830 +0.3 1.6 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
PGA1_c01150 +0.3 2.5 transcriptional regulatory protein ChvI compare
PGA1_c10130 +0.3 2.1 glutathione import ATP-binding protein GsiA compare
PGA1_c22840 +0.3 1.6 putative type IV secretory pathway virB3 protein compare
PGA1_c06390 +0.3 1.7 putative sulfate transporter compare
PGA1_c16750 +0.3 1.2 putative MFS-type transporter compare
PGA1_c20140 +0.3 1.6 putative arginine-tRNA-protein transferase compare
PGA1_c28180 +0.3 1.9 putative phosphatidyltransferase compare
PGA1_c12580 +0.3 1.4 Uncharacterized protein conserved in bacteria (DUF2155). compare
PGA1_c11190 +0.3 1.1 hypothetical protein compare
PGA1_262p01780 +0.3 1.4 transcriptional regulator, LysR family compare
PGA1_262p01300 +0.3 1.1 Cupin domain. compare
PGA1_c03080 +0.3 1.1 molybdenum cofactor biosynthesis protein B compare
PGA1_c27240 +0.3 0.8 hypothetical protein compare
PGA1_c20240 +0.3 1.9 Helix-turn-helix. compare
PGA1_c10910 +0.3 2.0 dihydroorotase PyrC compare
PGA1_c29010 +0.3 1.8 putative helix-turn-helix protein compare
PGA1_c14700 +0.3 0.9 hypothetical protein compare
PGA1_c07270 +0.3 1.2 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
PGA1_c25200 +0.3 1.6 putative cation transport protein ChaC compare
PGA1_c09290 +0.3 1.4 WGR domain. compare
PGA1_c33060 +0.3 1.7 glyoxalase-like protein compare
PGA1_c22060 +0.3 1.2 Putative virion core protein (lumpy skin disease virus) compare
PGA1_c02550 +0.3 1.8 protocatechuate 3,4-dioxygenase alpha chain compare
PGA1_c05470 +0.3 0.6 hydroxyisourate hydrolase compare
PGA1_262p00340 +0.3 1.3 oligopeptide ABC transporter, ATP binding protein compare
PGA1_c31780 +0.3 0.9 DNA polymerase I compare
PGA1_c01160 +0.3 2.3 sensor protein ChvG compare
PGA1_c08950 +0.3 1.3 hypothetical protein compare
PGA1_c20820 +0.3 1.4 Predicted periplasmic or secreted protein compare
PGA1_c21000 +0.3 1.6 Predicted integral membrane protein (DUF2282). compare
PGA1_c17260 +0.3 0.8 hypothetical protein compare
PGA1_c10350 +0.3 1.8 Predicted kinase compare
PGA1_c07720 +0.3 1.3 universal stress protein compare
PGA1_c23540 +0.3 1.7 O-succinylhomoserine sulfhydrylase MetZ compare
PGA1_c28910 +0.3 1.5 carboxymuconolactone decarboxylase-like protein compare
PGA1_c10110 +0.3 1.8 glutathione transport system permease protein GsiC compare
PGA1_c22680 +0.3 1.0 Arc-like DNA binding domain. compare
PGA1_c26890 +0.3 1.2 putative endoribonuclease compare
PGA1_c30900 +0.3 0.8 hypothetical protein compare
PGA1_c20230 +0.3 1.6 hypothetical protein compare
PGA1_c24400 +0.3 1.4 hypothetical protein compare
PGA1_c10630 +0.3 1.6 SnoaL-like polyketide cyclase. compare
PGA1_c31160 +0.3 1.4 conserved hypothetical protein, steroid delta-isomerase-related compare
PGA1_c07510 +0.3 2.3 DNA/RNA helicase-like protein compare
PGA1_262p00740 +0.3 1.3 putative peptidase, family M20/M25/M40 compare


Specific Phenotypes

None in this experiment

For Phaeobacter inhibens DSM 17395 in carbon source experiments

For carbon source Sodium butyrate across organisms