Experiment set7IT096 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -6.7 -4.6 Tol-Pal system protein TolB compare
IAI47_00655 -6.5 -6.3 glycosyltransferase family 4 protein compare
IAI47_17000 -5.2 -7.9 lipoprotein NlpI compare
IAI47_10845 -5.0 -3.5 major outer membrane lipoprotein compare
IAI47_13700 -5.0 -5.9 Tol-Pal system protein TolQ compare
IAI47_08085 -4.7 -3.3 helix-turn-helix domain-containing protein compare
IAI47_09235 -4.5 -3.1 type I DNA topoisomerase compare
IAI47_08705 -4.5 -6.1 carboxy terminal-processing peptidase compare
IAI47_12280 -4.4 -12.9 glucan biosynthesis protein G compare
IAI47_12275 -4.2 -19.8 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_09040 -4.2 -2.9 NAD-dependent epimerase compare
IAI47_09580 -4.2 -4.1 FNR family transcription factor compare
IAI47_08700 -4.1 -6.8 RNA chaperone ProQ compare
IAI47_15635 -4.0 -4.4 RNA polymerase-binding protein DksA compare
IAI47_18480 -3.9 -16.2 lipid III flippase WzxE compare
IAI47_12865 -3.7 -10.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_00780 -3.6 -3.5 6-phosphofructokinase compare
IAI47_05070 -3.5 -1.5 outer membrane protein assembly factor BamB compare
IAI47_11830 -3.2 -10.1 muramoyltetrapeptide carboxypeptidase compare
IAI47_13415 -3.2 -17.1 L,D-transpeptidase family protein compare
IAI47_17965 -3.1 -14.1 glucose-6-phosphate isomerase compare
IAI47_03725 -3.1 -10.3 phosphoglycerate dehydrogenase compare
IAI47_18055 -3.0 -9.0 DNA-binding protein HU-alpha compare
IAI47_12885 -3.0 -11.1 pyruvate formate lyase 1-activating protein compare
IAI47_09055 -3.0 -13.9 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_15485 -2.9 -2.0 molecular chaperone Skp compare
IAI47_00300 -2.9 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_13695 -2.9 -1.2 colicin uptake protein TolR compare
IAI47_16350 -2.9 -11.2 phosphoserine phosphatase compare
IAI47_17155 -2.9 -13.6 calcium/sodium antiporter compare
IAI47_12570 -2.8 -1.7 tRNA-Ser compare
IAI47_04120 -2.6 -15.4 GTP diphosphokinase compare
IAI47_18400 -2.6 -2.5 tyrosine recombinase XerC compare
IAI47_17005 -2.6 -7.0 polyribonucleotide nucleotidyltransferase compare
IAI47_06135 -2.5 -4.1 phosphohistidine phosphatase SixA compare
IAI47_12880 -2.5 -16.4 formate C-acetyltransferase compare
IAI47_08440 -2.2 -3.0 crossover junction endodeoxyribonuclease RuvC compare
IAI47_05155 -2.2 -14.5 polyphosphate kinase 1 compare
IAI47_05090 -2.2 -4.9 hypothetical protein compare
IAI47_13625 -2.2 -8.7 CDF family zinc transporter ZitB compare
IAI47_10520 -2.2 -3.9 pyridoxamine 5'-phosphate oxidase compare
IAI47_00460 -2.1 -2.9 glutamate--ammonia ligase compare
IAI47_17020 -2.1 -3.4 30S ribosome-binding factor RbfA compare
IAI47_08445 -2.1 -2.0 Holliday junction branch migration protein RuvA compare
IAI47_03820 -2.1 -4.1 site-specific tyrosine recombinase XerD compare
IAI47_07025 -2.0 -6.5 glycosyltransferase family 4 protein compare
IAI47_04895 -2.0 -3.8 pyridoxine 5'-phosphate synthase compare
IAI47_00760 -2.0 -4.5 envelope stress response regulator transcription factor CpxR compare
IAI47_12925 -2.0 -4.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_01005 -2.0 -10.5 DUF413 domain-containing protein compare
IAI47_01000 -2.0 -13.1 HTH-type transcriptional regulator HdfR compare
IAI47_21595 -2.0 -8.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_06565 -2.0 -2.2 YejL family protein compare
IAI47_15970 -1.9 -2.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_18470 -1.9 -10.8 ECA oligosaccharide polymerase compare
IAI47_00940 -1.9 -7.9 HTH-type transcriptional repressor FabR compare
IAI47_13690 -1.9 -0.8 cell envelope integrity protein TolA compare
IAI47_12470 -1.9 -11.4 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_01475 -1.9 -9.4 MurR/RpiR family transcriptional regulator compare
IAI47_03550 -1.8 -11.0 membrane-bound lytic murein transglycosylase MltC compare
IAI47_06245 -1.8 -3.5 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_00375 -1.8 -14.7 ribose operon transcriptional repressor RbsR compare
IAI47_03375 -1.8 -9.0 peptide chain release factor 3 compare
IAI47_13720 -1.8 -3.8 cytochrome d ubiquinol oxidase subunit II compare
IAI47_13770 -1.8 -9.2 citrate synthase compare
IAI47_12645 -1.8 -3.7 porin OmpA compare
IAI47_15540 -1.8 -9.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_00465 -1.8 -2.9 ribosome-dependent GTPase TypA compare
IAI47_18830 -1.8 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_13725 -1.7 -6.6 cytochrome ubiquinol oxidase subunit I compare
IAI47_16520 -1.7 -9.6 hypothetical protein compare
IAI47_07030 -1.7 -5.7 HAD family hydrolase compare
IAI47_11760 -1.7 -1.6 TonB-dependent siderophore receptor compare
IAI47_21600 -1.7 -3.3 EamA family transporter compare
IAI47_16420 -1.7 -11.6 LacI family DNA-binding transcriptional regulator compare
IAI47_00875 -1.7 -1.6 met regulon transcriptional regulator MetJ compare
IAI47_10725 -1.7 -2.6 DUF1656 domain-containing protein compare
IAI47_08450 -1.6 -3.3 Holliday junction branch migration DNA helicase RuvB compare
IAI47_12930 -1.6 -4.1 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_11475 -1.6 -1.3 hypothetical protein compare
IAI47_17235 -1.6 -8.7 stringent starvation protein A compare
IAI47_18410 -1.6 -4.0 diaminopimelate epimerase compare
IAI47_11450 -1.6 -4.3 ankyrin repeat domain-containing protein compare
IAI47_04110 -1.5 -12.9 two-component sensor histidine kinase BarA compare
IAI47_12305 -1.5 -6.2 hypothetical protein compare
IAI47_11200 -1.5 -3.1 DotU family type IV/VI secretion system protein compare
IAI47_07180 -1.5 -6.4 DUF496 family protein compare
IAI47_11415 -1.5 -2.0 hypothetical protein compare
IAI47_00330 -1.4 -10.4 low affinity potassium transporter Kup compare
IAI47_05050 -1.4 -4.6 cytoskeleton protein RodZ compare
IAI47_05425 -1.4 -4.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_06235 -1.4 -5.2 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_02260 -1.4 -5.2 Zn(2+)-responsive transcriptional regulator compare
IAI47_11310 -1.4 -3.2 redox-regulated ATPase YchF compare
IAI47_21655 -1.4 -1.2 LacI family DNA-binding transcriptional regulator compare
IAI47_12565 -1.4 -8.9 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_00110 -1.3 -6.4 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_04425 -1.3 -6.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_07020 -1.3 -1.1 hypothetical protein compare
IAI47_07165 -1.3 -1.9 exodeoxyribonuclease I compare
IAI47_13180 -1.3 -5.0 manganese-binding transcriptional regulator MntR compare
IAI47_10840 -1.3 -3.3 pyruvate kinase PykF compare
IAI47_03615 -1.3 -5.4 glutathione synthase compare
IAI47_10340 -1.2 -4.7 mannose-6-phosphate isomerase compare
IAI47_18520 -1.2 -8.3 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_04865 -1.2 -2.2 SoxR-reducing system protein RseC compare
IAI47_00445 -1.2 -7.3 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_04870 -1.2 -4.3 elongation factor 4 compare
IAI47_08355 -1.2 -2.2 flagellar protein FlhE compare
IAI47_10835 -1.2 -1.0 tRNA-Val compare
IAI47_05195 -1.1 -2.2 DnaA inactivator Hda compare
IAI47_04835 -1.1 -5.7 ATP-dependent RNA helicase SrmB compare
IAI47_02040 -1.1 -5.7 peptidylprolyl isomerase compare
IAI47_14855 -1.1 -7.4 phosphate response regulator transcription factor PhoB compare
IAI47_00675 -1.1 -9.2 glycosyltransferase family 9 protein compare
IAI47_07015 -1.1 -2.8 ABC transporter ATP-binding protein compare
IAI47_00755 -1.1 -6.7 envelope stress sensor histidine kinase CpxA compare
IAI47_19690 -1.1 -1.3 hypothetical protein compare
IAI47_18705 -1.1 -6.7 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_09165 -1.1 -5.2 tryptophan synthase subunit alpha compare
IAI47_10565 -1.1 -2.4 DUF4113 domain-containing protein compare
IAI47_18715 -1.1 -2.3 YibL family ribosome-associated protein compare
IAI47_16080 -1.1 -5.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_06915 -1.1 -6.2 outer membrane assembly protein AsmA compare
IAI47_00895 -1.1 -8.0 phosphoenolpyruvate carboxylase compare
IAI47_18530 -1.1 -1.8 thioredoxin TrxA compare
IAI47_00450 -1.1 -7.2 nitrogen regulation protein NR(I) compare
IAI47_08040 -1.0 -2.1 hypothetical protein compare
IAI47_00505 -1.0 -3.8 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_20705 -1.0 -1.2 sulfur carrier protein ThiS compare
IAI47_07095 -1.0 -5.5 ATP phosphoribosyltransferase compare
IAI47_07010 -1.0 -1.2 ABC transporter permease compare
IAI47_09170 -1.0 -6.6 tryptophan synthase subunit beta compare
IAI47_12920 -1.0 -2.6 thioredoxin-disulfide reductase compare
IAI47_04300 -1.0 -4.5 recombinase RecA compare
IAI47_18015 -1.0 -6.2 homoserine O-succinyltransferase compare
IAI47_03595 -1.0 -3.8 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_03400 -1.0 -4.2 deoxyribose-phosphate aldolase compare
IAI47_07065 -1.0 -5.1 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_07085 -0.9 -6.4 histidinol-phosphate transaminase compare
IAI47_04705 -0.9 -0.8 hypothetical protein compare
IAI47_09175 -0.9 -5.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_15155 -0.9 -1.5 DUF943 family protein compare
IAI47_04805 -0.9 -2.4 outer membrane protein assembly factor BamE compare
IAI47_01750 -0.9 -3.7 glycerol-3-phosphate dehydrogenase compare
IAI47_13890 -0.9 -4.5 ROK family transcriptional regulator compare
IAI47_18415 -0.9 -3.1 lipoprotein compare
IAI47_04800 -0.9 -0.9 RnfH family protein compare
IAI47_08850 -0.9 -3.1 septum site-determining protein MinD compare
IAI47_18145 -0.9 -1.4 elongation factor Tu compare
IAI47_08855 -0.9 -2.8 septum site-determining protein MinC compare
IAI47_17165 -0.9 -5.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_09320 -0.9 -5.1 exoribonuclease II compare
IAI47_13065 -0.9 -1.3 DUF1418 family protein compare
IAI47_17700 -0.9 -5.1 N-acetylmuramic acid 6-phosphate etherase compare
IAI47_16990 -0.9 -2.4 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_18740 -0.9 -5.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
IAI47_17185 -0.8 -3.3 RNA polymerase factor sigma-54 compare
IAI47_14850 -0.8 -5.0 phosphate regulon sensor histidine kinase PhoR compare
IAI47_11995 -0.8 -2.9 beta-N-acetylhexosaminidase compare
IAI47_07075 -0.8 -4.3 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_06965 -0.8 -1.3 glycosyltransferase family 2 protein compare
IAI47_14595 -0.8 -5.8 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
IAI47_13480 -0.8 -1.6 molybdopterin synthase sulfur carrier subunit compare
IAI47_15110 -0.8 -2.7 chromophore lyase compare
IAI47_18490 -0.8 -2.6 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_16870 -0.8 -3.8 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_04830 -0.8 -2.8 autonomous glycyl radical cofactor GrcA compare
IAI47_05035 -0.8 -1.4 nucleoside-diphosphate kinase compare
IAI47_17225 -0.8 -6.2 sulfite reductase subunit alpha compare
IAI47_09180 -0.8 -4.6 anthranilate phosphoribosyltransferase compare
IAI47_07490 -0.8 -1.5 DNA-binding protein compare
IAI47_01515 -0.8 -5.7 zinc/cadmium/mercury/lead-transporting ATPase compare
IAI47_12655 -0.8 -5.5 Lon protease family protein compare
IAI47_01650 -0.8 -5.6 gluconate operon transcriptional repressor GntR compare
IAI47_00500 -0.8 -5.5 ATP-dependent DNA helicase RecG compare
IAI47_00935 -0.8 -3.0 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_05510 -0.8 -4.8 putative DNA-binding transcriptional regulator compare
IAI47_13950 -0.8 -0.8 PhoH family protein compare
IAI47_00670 -0.8 -6.5 sugar glycosyltransferase compare
IAI47_02600 -0.8 -5.3 FtsH protease activity modulator HflK compare
IAI47_15120 -0.8 -3.4 glutamate 5-kinase compare
IAI47_07060 -0.8 -4.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_18420 -0.8 -5.1 class I adenylate cyclase compare
IAI47_21610 -0.8 -5.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_03195 -0.8 -1.9 cell division protein FtsP compare
IAI47_00915 -0.7 -5.6 argininosuccinate synthase compare
IAI47_00660 -0.7 -5.4 putative lipopolysaccharide heptosyltransferase III compare
IAI47_13900 -0.7 -5.3 asparagine synthase B compare
IAI47_11625 -0.7 -1.8 DUF1311 domain-containing protein compare
IAI47_12605 -0.7 -4.8 CoA-binding protein compare
IAI47_16195 -0.7 -4.1 transaldolase compare
IAI47_01820 -0.7 -4.1 two-component system response regulator OmpR compare
IAI47_17220 -0.7 -6.3 glutamate synthase large subunit compare
IAI47_02380 -0.7 -1.6 DNA-binding transcriptional regulator Fis compare
IAI47_02385 -0.7 -4.8 tRNA dihydrouridine synthase DusB compare
IAI47_00515 -0.7 -1.4 DNA-directed RNA polymerase subunit omega compare
IAI47_15115 -0.7 -3.9 glutamate-5-semialdehyde dehydrogenase compare
IAI47_12875 -0.7 -3.5 formate transporter FocA compare
IAI47_03135 -0.7 -3.4 outer membrane channel protein TolC compare


Specific Phenotypes

For 2 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50 across organisms