Experiment set7IT095 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM L-Ornithine

200 most important genes:

  gene name fitness t score description  
MMP_RS07345 -6.4 -8.8 glycine synthesis protein GlyXL (from data) compare
MMP_RS04450 -6.0 -13.2 P-II family nitrogen regulator compare
MMP_RS08715 -5.9 -2.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03450 -5.5 -3.3 glycine synthesis protein GlyXS (from data) compare
MMP_RS04460 -5.2 -26.9 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS05500 -5.1 -12.2 2-isopropylmalate synthase compare
MMP_RS04465 -5.1 -20.5 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS04455 -5.1 -25.1 nitrogenase subunit alpha compare
MMP_RS01500 -5.0 -3.1 CBS domain-containing protein compare
MMP_RS08790 -5.0 -2.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS04440 -4.9 -12.4 nitrogenase iron protein compare
MMP_RS06355 -4.9 -4.4 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS04470 -4.8 -20.6 nitrogenase compare
MMP_RS01795 -4.7 -2.3 methanogenesis marker 6 protein compare
MMP_RS07185 -4.7 -16.7 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04710 -4.6 -2.8 hypothetical protein compare
MMP_RS00555 -4.6 -9.3 MFS transporter compare
MMP_RS04445 -4.6 -9.1 P-II family nitrogen regulator compare
MMP_RS02675 -4.6 -4.8 hypothetical protein compare
MMP_RS05515 -4.6 -12.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS02685 -4.4 -15.9 molybdate ABC transporter substrate-binding protein compare
MMP_RS02670 -4.4 -14.9 ATP-binding cassette domain-containing protein compare
MMP_RS03445 -4.4 -1.3 methanogenesis marker 17 protein compare
MMP_RS02010 -4.3 -12.7 PHP domain-containing protein compare
MMP_RS01755 -4.2 -1.8 DUF2097 domain-containing protein compare
MMP_RS08720 -4.2 -2.3 4Fe-4S binding protein compare
MMP_RS07635 -4.2 -12.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01175 -4.2 -6.7 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS01265 -4.2 -3.4 hypothetical protein compare
MMP_RS08165 -4.1 -2.6 phosphoglycerate dehydrogenase compare
MMP_RS02355 -4.1 -4.8 30S ribosomal protein S27ae compare
MMP_RS06120 -4.1 -3.3 UPF0147 family protein compare
MMP_RS06730 -4.1 -3.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS03015 -4.0 -12.8 GTP 3' 8-cyclase MoaA compare
MMP_RS02145 -4.0 -12.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS03315 -4.0 -1.9 ferrous iron transport protein A compare
MMP_RS06625 -4.0 -2.7 DNA primase compare
MMP_RS01225 -3.9 -6.3 DUF5379 domain-containing protein compare
MMP_RS05250 -3.9 -2.6 NFYB/HAP3 family transcription factor subunit compare
MMP_RS02680 -3.8 -11.6 ABC transporter permease compare
MMP_RS02730 -3.8 -15.8 ModD protein compare
MMP_RS07525 -3.8 -9.7 4Fe-4S binding protein compare
MMP_RS03435 -3.8 -2.5 ketol-acid reductoisomerase compare
MMP_RS06475 -3.8 -5.8 FAD-dependent oxidoreductase compare
MMP_RS00455 -3.7 -11.5 orotate phosphoribosyltransferase-like protein compare
MMP_RS06350 -3.7 -11.3 HesA/MoeB/ThiF family protein compare
MMP_RS00040 -3.7 -5.0 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS04090 -3.7 -3.4 hypothetical protein compare
MMP_RS06400 -3.7 -2.5 4Fe-4S binding protein compare
MMP_RS07735 -3.7 -1.1 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07730 -3.6 -2.6 pyruvate synthase subunit beta compare
MMP_RS07605 -3.5 -4.0 diadenylate cyclase compare
MMP_RS05930 -3.4 -3.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS06295 -3.4 -10.3 methanogenesis marker 14 protein compare
MMP_RS08435 -3.4 -3.1 Era-like GTP-binding protein compare
MMP_RS08860 -3.4 -8.7 MinD/ParA family protein compare
MMP_RS08635 -3.4 -2.9 UbiA family prenyltransferase compare
MMP_RS06895 -3.3 -2.3 selenocysteine-specific translation elongation factor compare
MMP_RS08650 -3.3 -4.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01800 -3.3 -5.4 TIGR00303 family protein compare
MMP_RS07845 -3.3 -2.7 LL-diaminopimelate aminotransferase compare
MMP_RS07435 -3.3 -2.8 GMP synthase subunit A compare
MMP_RS04585 -3.2 -13.7 AIR synthase related protein compare
MMP_RS01020 -3.2 -1.5 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03035 -3.2 -5.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01545 -3.2 -1.5 CBS domain-containing protein compare
MMP_RS02240 -3.2 -3.5 methanogenesis marker 7 protein compare
MMP_RS07445 -3.2 -6.4 helix-turn-helix domain-containing protein compare
MMP_RS03700 -3.2 -11.7 sodium:proton antiporter compare
MMP_RS03025 -3.2 -8.3 molybdenum cofactor guanylyltransferase compare
MMP_RS02800 -3.1 -8.1 nucleotidyltransferase domain-containing protein compare
MMP_RS01610 -3.1 -5.3 hypothetical protein compare
MMP_RS06725 -3.1 -12.6 hypothetical protein compare
MMP_RS06270 -3.1 -8.2 TIGR00300 family protein compare
MMP_RS04685 -3.0 -3.4 DUF126 domain-containing protein compare
MMP_RS00305 -3.0 -2.6 phosphoribosyl-ATP diphosphatase compare
MMP_RS06020 -3.0 -5.4 archaeoflavoprotein AfpA compare
MMP_RS07365 -3.0 -15.7 2-phosphoglycerate kinase compare
MMP_RS07600 -2.9 -3.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS04605 -2.9 -7.7 cobalt ECF transporter T component CbiQ compare
MMP_RS06285 -2.9 -3.3 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS03600 -2.8 -3.4 triose-phosphate isomerase compare
MMP_RS02900 -2.8 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08500 -2.8 -7.0 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS08440 -2.8 -3.6 cell division protein SepF compare
MMP_RS00915 -2.8 -8.2 DUF116 domain-containing protein compare
MMP_RS04900 -2.7 -19.1 hypothetical protein compare
MMP_RS03475 -2.7 -1.1 hypothetical protein compare
MMP_RS03960 -2.7 -1.4 hypothetical protein compare
MMP_RS07390 -2.7 -3.1 cell division protein FtsZ compare
MMP_RS07075 -2.7 -6.5 phosphomannomutase/phosphoglucomutase compare
MMP_RS06315 -2.7 -1.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS01220 -2.7 -10.0 hypothetical protein compare
MMP_RS05430 -2.7 -5.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS03110 -2.7 -7.6 glycosyltransferase family 2 protein compare
MMP_RS02345 -2.6 -5.1 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS08300 -2.6 -1.5 metal-sulfur cluster assembly factor compare
MMP_RS07200 -2.6 -7.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00985 -2.6 -6.8 CDC48 family AAA ATPase compare
MMP_RS00810 -2.6 -9.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS04780 -2.6 -3.8 ribonuclease P compare
MMP_RS05265 -2.6 -3.2 2-isopropylmalate synthase compare
MMP_RS01830 -2.5 -2.0 tRNA-Val compare
MMP_RS01005 -2.5 -2.0 riboflavin synthase compare
MMP_RS04890 -2.5 -1.2 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08645 -2.5 -8.3 UPF0179 family protein compare
MMP_RS00300 -2.5 -0.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07380 -2.5 -2.8 transcription elongation factor Spt5 compare
MMP_RS01385 -2.5 -0.9 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00735 -2.5 -4.8 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS03640 -2.4 -4.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05925 -2.4 -4.5 small nuclear ribonucleoprotein compare
MMP_RS01725 -2.4 -4.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS02245 -2.4 -5.0 hypothetical protein compare
MMP_RS01380 -2.4 -6.0 PHP domain-containing protein compare
MMP_RS05425 -2.4 -4.5 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS00725 -2.3 -8.0 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS08460 -2.3 -2.9 proteasome-activating nucleotidase compare
MMP_RS03580 -2.3 -4.6 signal recognition particle-docking protein FtsY compare
MMP_RS06395 -2.3 -3.2 ThiF family adenylyltransferase compare
MMP_RS06670 -2.2 -6.0 glucose-6-phosphate isomerase compare
MMP_RS04850 -2.2 -16.0 UPF0254 family protein compare
MMP_RS09020 -2.2 -2.1 hypothetical protein compare
MMP_RS00310 -2.2 -6.8 CBS domain-containing protein compare
MMP_RS01875 -2.2 -11.4 N-acetyltransferase compare
MMP_RS07695 -2.2 -6.6 DUF3236 domain-containing protein compare
MMP_RS08785 -2.1 -1.2 RNA-protein complex protein Nop10 compare
MMP_RS08745 -2.1 -7.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01890 -2.1 -6.7 nucleotide sugar dehydrogenase compare
MMP_RS07545 -2.1 -1.2 HTH domain-containing protein compare
MMP_RS00685 -2.1 -4.2 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00730 -2.1 -4.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS06230 -2.1 -3.1 helix-turn-helix domain-containing protein compare
MMP_RS04720 -2.1 -3.6 DedA family protein compare
MMP_RS01880 -2.0 -7.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS01085 -2.0 -2.4 hypothetical protein compare
MMP_RS05550 -2.0 -0.9 cation:proton antiporter compare
MMP_RS06855 -2.0 -8.2 hypothetical protein compare
MMP_RS00695 -2.0 -1.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01885 -2.0 -9.0 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS05345 -2.0 -7.5 hypothetical protein compare
MMP_RS07535 -2.0 -7.6 4Fe-4S binding protein compare
MMP_RS08855 -2.0 -9.2 hypothetical protein compare
MMP_RS07355 -1.9 -1.1 transcription factor S compare
MMP_RS05845 -1.9 -1.9 tRNA-intron lyase compare
MMP_RS04790 -1.9 -9.1 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS00315 -1.9 -6.6 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS00515 -1.9 -1.0 DUF655 domain-containing protein compare
MMP_RS08210 -1.9 -2.0 phosphatidylglycerophosphatase A compare
MMP_RS05640 -1.9 -5.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS04870 -1.9 -4.2 TIGR02253 family HAD-type hydrolase compare
MMP_RS07090 -1.9 -8.3 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06340 -1.9 -7.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS02780 -1.9 -6.1 hypothetical protein compare
MMP_RS04615 -1.8 -2.9 PDGLE domain-containing protein compare
MMP_RS05535 -1.8 -5.3 hypothetical protein compare
MMP_RS00320 -1.8 -2.3 class I SAM-dependent methyltransferase compare
MMP_RS07700 -1.8 -10.1 DUF1188 domain-containing protein compare
MMP_RS06105 -1.8 -8.1 hydrogenase maturation peptidase HycI compare
MMP_RS05440 -1.8 -8.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS07710 -1.8 -6.4 cell division protein FtsZ compare
MMP_RS05540 -1.7 -2.5 hypothetical protein compare
MMP_RS04620 -1.7 -9.4 cobalt transporter CbiM compare
MMP_RS02195 -1.7 -3.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS00520 -1.7 -1.9 RNA polymerase Rpb4 family protein compare
MMP_RS01665 -1.7 -3.4 DUF2111 domain-containing protein compare
MMP_RS06940 -1.7 -3.9 polyprenyl diphosphate synthase compare
MMP_RS01925 -1.7 -6.4 DUF1616 domain-containing protein compare
MMP_RS03420 -1.7 -2.8 acetolactate synthase small subunit compare
MMP_RS05555 -1.7 -1.9 DUF4040 domain-containing protein compare
MMP_RS01955 -1.7 -3.4 hypothetical protein compare
MMP_RS06975 -1.6 -1.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS01325 -1.6 -1.8 dihydroneopterin aldolase family protein compare
MMP_RS08330 -1.6 -4.5 NADH-quinone oxidoreductase subunit H compare
MMP_RS05460 -1.6 -9.0 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS02165 -1.6 -7.6 tRNA-dihydrouridine synthase compare
MMP_RS06885 -1.6 -1.9 50S ribosome-binding GTPase compare
MMP_RS01900 -1.6 -8.7 hypothetical protein compare
MMP_RS08155 -1.6 -7.8 hypothetical protein compare
MMP_RS04955 -1.6 -5.3 DNA topoisomerase I compare
MMP_RS06175 -1.6 -4.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS00895 -1.5 -3.2 hypothetical protein compare
MMP_RS01445 -1.5 -6.2 hypothetical protein compare
MMP_RS01975 -1.5 -8.7 hypothetical protein compare
MMP_RS06900 -1.5 -3.0 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07575 -1.5 -4.3 RNA ligase partner protein compare
MMP_RS03120 -1.5 -3.9 hypothetical protein compare
MMP_RS08570 -1.5 -8.3 coenzyme F420-0:L-glutamate ligase compare
MMP_RS04695 -1.5 -5.0 selenide water dikinase SelD compare
MMP_RS00750 -1.4 -1.9 fumarate hydratase compare
MMP_RS07330 -1.4 -10.5 membrane protein compare
MMP_RS06630 -1.4 -0.8 UPF0058 family protein compare
MMP_RS05295 -1.4 -7.6 minichromosome maintenance protein MCM compare
MMP_RS08705 -1.4 -6.4 sulfopyruvate decarboxylase subunit beta compare
MMP_RS07705 -1.4 -6.2 transcriptional regulator compare
MMP_RS08820 -1.4 -5.9 hypothetical protein compare
MMP_RS06980 -1.4 -4.5 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS05635 -1.4 -7.5 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS03550 -1.4 -1.3 DUF2124 domain-containing protein compare
MMP_RS00035 -1.3 -4.8 DUF2098 family protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Ornithine in Methanococcus maripaludis S2

For nitrogen source L-Ornithine across organisms