Experiment set7IT093 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with Cholin acetate 15 mM

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c08600 +1.6 13.2 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c08590 +1.5 10.7 heme NO binding domain-containing protein compare
PGA1_c33190 +1.5 8.3 putative anti-sigma-B factor antagonist compare
PGA1_c34880 +1.4 11.7 putative response regulator compare
PGA1_c34890 +1.2 9.3 putative histidine-containing phosphotransfer protein compare
PGA1_c17260 +1.2 2.9 hypothetical protein compare
PGA1_c13510 +1.2 2.2 hypothetical protein compare
PGA1_65p00450 +1.2 4.4 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c18380 +1.0 1.9 Phage Head-Tail Attachment. compare
PGA1_c07900 +1.0 7.0 alpha-glucoside transport ATP-binding protein AglK compare
PGA1_c02460 +0.9 8.0 hypothetical protein compare
PGA1_c26030 +0.9 2.1 transcriptional regulator, MarR family compare
PGA1_c02440 +0.9 7.1 putative ATP-binding/permease fusion ABC transporter compare
PGA1_c20140 +0.9 4.8 putative arginine-tRNA-protein transferase compare
PGA1_c07710 +0.9 2.0 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c07890 +0.9 6.3 cytoplasmic trehalase (AlgA) (from data) compare
PGA1_65p00370 +0.8 3.4 putative glycosyl transferase compare
PGA1_c30000 +0.8 3.0 ATP-dependent Clp protease adaptor protein ClpS compare
PGA1_c07860 +0.8 5.8 alpha-glucosides-binding periplasmic protein AglE compare
PGA1_c02450 +0.8 6.1 putative outer membrane efflux protein compare
PGA1_c07870 +0.8 4.6 alpha-glucoside transport system permease protein AglF compare
PGA1_65p00150 +0.8 2.7 Protein of unknown function (DUF2886). compare
PGA1_c11540 +0.8 1.6 gamma-glutamylputrescine synthetase PuuA compare
PGA1_c35770 +0.8 1.6 putative flagella basal body P-ring formation protein FlgA compare
PGA1_c02430 +0.8 5.5 type I secretion membrane fusion protein, HlyD family compare
PGA1_c14720 +0.7 0.7 Oligoketide cyclase/lipid transport protein compare
PGA1_c14190 +0.7 4.4 putative transcriptional regulator, AraC family compare
PGA1_c07880 +0.7 4.8 alpha-glucoside transport system permease protein AglG compare
PGA1_c07950 +0.7 1.6 hypothetical protein compare
PGA1_c27240 +0.7 1.6 hypothetical protein compare
PGA1_262p00310 +0.6 2.4 glutathione transport system permease protein GsiC compare
PGA1_c14700 +0.6 3.0 hypothetical protein compare
PGA1_c31880 +0.6 5.8 signal transduction histidine kinase compare
PGA1_78p00270 +0.6 1.5 lipoyl synthase LipA compare
PGA1_c06330 +0.6 2.2 putative ribosomal-protein-alanine acetyltransferase compare
PGA1_c31270 +0.6 5.4 putative glycosyltransferase / polysaccharide deacetylase compare
PGA1_262p00770 +0.6 1.7 putative lytic murein transglycosylase compare
PGA1_c05390 +0.6 3.1 glycosyl transferase compare
PGA1_c21900 +0.6 1.8 Uncharacterized conserved small protein compare
PGA1_c09290 +0.6 2.7 WGR domain. compare
PGA1_c23800 +0.6 3.2 hypothetical protein compare
PGA1_c12310 +0.5 3.8 glucans biosynthesis protein G compare
PGA1_c01830 +0.5 1.3 Uncharacterized conserved small protein compare
PGA1_c04010 +0.5 0.8 putative universal stress protein compare
PGA1_c15590 +0.5 4.9 putative transcriptional activator protein compare
PGA1_c05360 +0.5 4.0 putative glycosyl transferase compare
PGA1_78p00030 +0.5 1.0 putative multicopper oxidase compare
PGA1_c32520 +0.5 2.9 Protein of unknown function (DUF2938). compare
PGA1_c17200 +0.5 1.6 transcriptional regulator, TetR family compare
PGA1_65p00170 +0.5 2.1 putative capsular polysaccharide biosynthesis protein compare
PGA1_c06420 +0.5 1.9 acetyltransferase domain-containing protein compare
PGA1_c31260 +0.5 4.7 Protein of unknown function (DUF3131). compare
PGA1_c20000 +0.5 1.3 hypothetical protein compare
PGA1_c10740 +0.5 2.3 Predicted ATPase (AAA+ superfamily) compare
PGA1_262p00420 +0.5 2.0 Transcriptional regulator/sugar kinase compare
PGA1_c12330 +0.5 2.1 hypothetical protein compare
PGA1_c13750 +0.5 2.2 phosphopantetheine binding protein compare
PGA1_c08890 +0.5 2.5 putative capsule polysaccharide export outer membrane protein compare
PGA1_262p00330 +0.5 2.2 oligopeptide ABC transporter, ATP binding protein compare
PGA1_c22500 +0.5 2.0 hypothetical protein compare
PGA1_c08780 +0.5 1.3 hypothetical protein compare
PGA1_c15380 +0.5 1.0 Uncharacterized conserved protein compare
PGA1_c16750 +0.5 2.1 putative MFS-type transporter compare
PGA1_c16360 +0.5 1.9 putative transriptional regulator, AsnC family compare
PGA1_c31230 +0.5 1.3 hypothetical protein compare
PGA1_c02020 +0.5 2.1 Predicted metal-binding protein compare
PGA1_c06000 +0.4 1.7 chorismate mutase-like protein compare
PGA1_c31830 +0.4 2.3 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
PGA1_c11710 +0.4 2.1 transcriptional regulator, LysR family compare
PGA1_262p00100 +0.4 1.6 putative glycosyl transferase compare
PGA1_262p01310 +0.4 2.3 putative flavin-containing monooxygenase compare
PGA1_c05180 +0.4 1.3 Predicted small integral membrane protein compare
PGA1_262p01410 +0.4 1.1 malate/L-lactate dehydrogenase-like protein compare
PGA1_262p00430 +0.4 1.5 glucose transporter, periplasmic substrate-binding component (from data) compare
PGA1_c21330 +0.4 2.1 uncharacterized peroxidase-related enzyme compare
PGA1_65p00070 +0.4 1.1 putative regulatory protein, LuxR family compare
PGA1_78p00150 +0.4 0.9 putative HTH-type transcriptional regulator compare
PGA1_262p00840 +0.4 2.4 hypothetical protein compare
PGA1_c17680 +0.4 0.8 hypothetical protein compare
PGA1_262p01390 +0.4 1.5 hypothetical protein compare
PGA1_c24050 +0.4 1.2 hypothetical protein compare
PGA1_c29280 +0.4 2.1 peroxiredoxin compare
PGA1_c05400 +0.4 2.7 putative glycosyl transferase, family 2 compare
PGA1_c12300 +0.4 2.6 glucans biosynthesis glucosyltransferase H compare
PGA1_c05380 +0.4 2.9 hypothetical protein compare
PGA1_65p00350 +0.4 2.6 hemolysin-like protein compare
PGA1_c11160 +0.4 1.6 putative beta-hexosaminidase compare
PGA1_262p00470 +0.4 0.8 Plasmid stabilization system protein compare
PGA1_c11390 +0.4 1.2 putative ATP-dependent RNA helicase RhlE compare
PGA1_c16210 +0.4 0.8 iron-sulfur cluster binding domain-containing protein compare
PGA1_262p00250 +0.4 1.2 ferritin-like protein compare
PGA1_c01150 +0.4 3.1 transcriptional regulatory protein ChvI compare
PGA1_c32670 +0.4 1.7 putative phosphoglycerate mutase family protein compare
PGA1_c17050 +0.4 1.1 N-acetyl-gamma-glutamyl-phosphate reductase ArgC compare
PGA1_c11490 +0.4 2.5 pyrimidine-specific ribonucleoside hydrolase RihA compare
PGA1_c16120 +0.4 1.4 hypothetical protein compare
PGA1_c21010 +0.4 2.2 component of stress sensing system, with PGA1_c21020 (DUF2063) (from data) compare
PGA1_c01810 +0.4 2.4 putative transcriptional regulator, GntR family compare
PGA1_c11400 +0.4 1.8 ferric uptake regulation protein Fur compare
PGA1_c13640 +0.4 2.1 Phosphopantetheine attachment site. compare
PGA1_c15790 +0.4 1.4 putative phosphate transporter, phosphate-binding protein compare
PGA1_c33610 +0.4 1.9 hypothetical protein compare
PGA1_c12420 +0.4 1.8 cytochrome c SoxX compare
PGA1_c17170 +0.4 1.6 hypothetical protein compare
PGA1_c29160 +0.4 2.2 HTH-type transcriptional regulator, LysR family compare
PGA1_262p01020 +0.4 1.8 dipeptide transport system permease protein DppC compare
PGA1_c21640 +0.4 1.0 hypothetical protein compare
PGA1_c12960 +0.4 1.9 putative extracellular solute-binding protein compare
PGA1_c16820 +0.4 1.4 putative threonine efflux protein compare
PGA1_c12730 +0.4 0.8 TIGR01244 family protein compare
PGA1_c24410 +0.4 1.3 hypothetical protein compare
PGA1_65p00270 +0.4 1.6 Hemolysin-type calcium-binding repeat (2 copies). compare
PGA1_c26040 +0.4 1.7 hypothetical protein compare
PGA1_c24420 +0.4 1.5 Uncharacterized conserved protein compare
PGA1_c18970 +0.4 1.9 hypothetical protein compare
PGA1_c07930 +0.3 1.8 two-component system response regulator compare
PGA1_65p00180 +0.3 0.9 putative sugar transferase compare
PGA1_c17400 +0.3 1.8 Uncharacterized protein conserved in bacteria compare
PGA1_c10090 +0.3 1.6 YeeE/YedE family (DUF395). compare
PGA1_c04600 +0.3 1.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
PGA1_c30900 +0.3 1.4 hypothetical protein compare
PGA1_c01160 +0.3 2.5 sensor protein ChvG compare
PGA1_c20480 +0.3 0.6 tRNA-Val compare
PGA1_c15690 +0.3 1.8 short chain dehydrogenase / reductase compare
PGA1_c05370 +0.3 3.0 polyketide synthase compare
PGA1_c35410 +0.3 1.3 hypothetical protein compare
PGA1_78p00060 +0.3 0.4 Uncharacterized protein conserved in bacteria compare
PGA1_262p02160 +0.3 2.1 putative chemotaxis response regulator protein-glutamate methylesterase compare
PGA1_c05310 +0.3 2.3 putative glycosyl transferase compare
PGA1_c11470 +0.3 1.1 acetyltransferase domain-containing protein compare
PGA1_262p02010 +0.3 0.8 Uncharacterized conserved protein compare
PGA1_c10350 +0.3 1.7 Predicted kinase compare
PGA1_c21720 +0.3 1.9 putative S-adenosylmethionine uptake transporter compare
PGA1_c27440 +0.3 1.6 alpha/beta hydrolase domain-containing protein compare
PGA1_c29000 +0.3 1.5 inner membrane lipoprotein compare
PGA1_c10790 +0.3 1.6 Type IV pilus biogenesis. compare
PGA1_c26330 +0.3 1.8 putative thioredoxin compare
PGA1_262p01630 +0.3 0.7 hypothetical protein compare
PGA1_c21060 +0.3 1.7 cold shock protein CspA compare
PGA1_c03920 +0.3 1.3 Putative transmembrane protein (Alph_Pro_TM). compare
PGA1_c22490 +0.3 0.8 hypothetical protein compare
PGA1_c07650 +0.3 2.2 hypothetical protein compare
PGA1_262p01450 +0.3 1.5 putative membrane dipeptidase compare
PGA1_c00550 +0.3 1.7 putative cob(II)yrinic acid a,c-diamide reductase compare
PGA1_c10580 +0.3 1.4 ribonuclease J 1 compare
PGA1_c31930 +0.3 2.3 putative transporter, MFS family compare
PGA1_78p00100 +0.3 0.9 flavohemoprotein Hmp compare
PGA1_c23620 +0.3 1.4 Predicted membrane protein compare
PGA1_78p00120 +0.3 0.8 aldehyde dehydrogenase compare
PGA1_c11410 +0.3 1.6 putative integral membrane protein compare
PGA1_c10000 +0.3 1.8 short chain dehydrogenase / reductase compare
PGA1_c05410 +0.3 2.2 hypothetical protein compare
PGA1_c28600 +0.3 0.5 tRNA-Met compare
PGA1_c34460 +0.3 2.1 hypothetical protein compare
PGA1_c10210 +0.3 1.1 hypothetical protein compare
PGA1_262p01930 +0.3 1.0 putative transcriptional regulator, ArsR family compare
PGA1_c34190 +0.3 1.6 methyltransferase-like protein compare
PGA1_c13000 +0.3 1.3 hypothetical protein compare
PGA1_c03390 +0.3 1.9 acetoacetyl-CoA reductase PhaB compare
PGA1_c34230 +0.3 1.8 putative HTH-type transcriptional regulator, AraC family compare
PGA1_c17740 +0.3 1.6 putative gene transfer agent protein compare
PGA1_c25970 +0.3 1.5 tonB-like protein compare
PGA1_c19050 +0.3 1.1 hypothetical protein compare
PGA1_c28120 +0.3 1.2 xanthine dehydrogenase XdhC compare
PGA1_c32950 +0.3 1.8 tRNA pseudouridine synthase B compare
PGA1_c05260 +0.3 2.1 exopolysaccharide production protein ExoY-like protein compare
PGA1_262p00440 +0.3 1.2 glucose transporter, permease component (from data) compare
PGA1_c13850 +0.3 1.7 SnoaL-like polyketide cyclase. compare
PGA1_c34410 +0.3 1.5 HTH-type transcriptional regulator, GntR family compare
PGA1_c20800 +0.3 1.7 hypothetical protein compare
PGA1_c09960 +0.3 1.1 putative transcriptional regulator, TetR family compare
PGA1_c08500 +0.3 0.9 hypothetical protein compare
PGA1_c15070 +0.3 1.7 Nickel uptake substrate-specific transmembrane region. compare
PGA1_c07910 +0.3 1.6 ABC-type Fe3+ transport system, periplasmic component compare
PGA1_c35560 +0.3 1.8 chemotaxis protein MotB-like protein compare
PGA1_c17810 +0.3 1.4 putative gene transfer agent protein compare
PGA1_c02480 +0.3 2.2 Uncharacterized conserved protein compare
PGA1_c34770 +0.3 1.9 Uncharacterized protein conserved in bacteria compare
PGA1_c32090 +0.3 1.5 glutathione transport system permease protein GsiD compare
PGA1_65p00260 +0.3 1.3 putative metallopeptidase compare
PGA1_c32430 +0.3 1.6 hypothetical protein compare
PGA1_c31570 +0.3 1.7 cytochrome c-like protein compare
PGA1_c15020 +0.3 1.6 D-beta-hydroxybutyrate dehydrogenase BdhA compare
PGA1_c15660 +0.3 1.6 enoyl-CoA hydratase/isomerase family protein compare
PGA1_c12320 +0.3 1.4 Uncharacterized protein conserved in bacteria compare
PGA1_c32060 +0.3 1.7 glutathione-binding protein GsiB compare
PGA1_c34480 +0.3 0.8 UTP--glucose-1-phosphate uridylyltransferase CelA compare
PGA1_c13500 +0.3 1.1 hypothetical protein compare
PGA1_c13240 +0.3 1.7 transcriptional regulator, LysR family compare
PGA1_c14960 +0.3 1.1 putative transcriptional regulator compare
PGA1_c05280 +0.3 1.7 hypothetical protein compare
PGA1_c06120 +0.3 1.7 Flp pilus assembly protein, ATPase CpaE compare
PGA1_c18260 +0.3 1.0 phage major tail tube protein compare
PGA1_c11930 +0.3 1.1 Cytidine deaminase (EC 3.5.4.5) (from data) compare
PGA1_c21950 +0.3 1.3 putative N-acetylmuramoyl-L-alanine amidase AmiD compare
PGA1_c25190 +0.3 1.8 hypothetical protein compare
PGA1_c13690 +0.3 2.0 3-oxoacyl-[acyl-carrier-protein] synthase III compare
PGA1_c13080 +0.3 0.8 transcriptional regulator, GntR family compare
PGA1_c05880 +0.3 0.9 hypothetical protein compare
PGA1_c32530 +0.3 1.7 CobW-like nucleotide-binding protein compare


Specific Phenotypes

None in this experiment

For Phaeobacter inhibens DSM 17395 in stress experiments

For stress Cholin acetate across organisms