Experiment set7IT092 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with Furfuryl Alcohol 0.064 vol%

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c07900 +2.0 17.1 alpha-glucoside transport ATP-binding protein AglK compare
PGA1_c07870 +2.0 15.8 alpha-glucoside transport system permease protein AglF compare
PGA1_c07880 +2.0 15.7 alpha-glucoside transport system permease protein AglG compare
PGA1_c07860 +1.9 15.1 alpha-glucosides-binding periplasmic protein AglE compare
PGA1_c07890 +1.8 14.1 cytoplasmic trehalase (AlgA) (from data) compare
PGA1_c08590 +1.2 8.7 heme NO binding domain-containing protein compare
PGA1_c08600 +1.2 9.0 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c18380 +1.2 1.8 Phage Head-Tail Attachment. compare
PGA1_c34880 +1.1 8.8 putative response regulator compare
PGA1_c35770 +1.1 3.2 putative flagella basal body P-ring formation protein FlgA compare
PGA1_c33190 +1.0 6.5 putative anti-sigma-B factor antagonist compare
PGA1_c07710 +1.0 1.9 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c00600 +0.8 1.7 putative acetyltransferase compare
PGA1_c34890 +0.8 6.3 putative histidine-containing phosphotransfer protein compare
PGA1_c17260 +0.8 2.8 hypothetical protein compare
PGA1_c23540 +0.8 5.0 O-succinylhomoserine sulfhydrylase MetZ compare
PGA1_c19870 +0.8 2.7 hypothetical protein compare
PGA1_c30000 +0.7 2.1 ATP-dependent Clp protease adaptor protein ClpS compare
PGA1_c11710 +0.7 3.9 transcriptional regulator, LysR family compare
PGA1_c34770 +0.7 4.7 Uncharacterized protein conserved in bacteria compare
PGA1_262p00720 +0.7 1.8 serine/threonine-protein kinase RsbT-like protein compare
PGA1_c12390 +0.7 1.7 putative protein SoxS compare
PGA1_c23800 +0.7 3.6 hypothetical protein compare
PGA1_c09290 +0.7 3.7 WGR domain. compare
PGA1_262p01280 +0.7 1.6 transcriptional regulator, TetR family compare
PGA1_78p00030 +0.7 1.4 putative multicopper oxidase compare
PGA1_262p00700 +0.7 1.6 stressosome protein rsbS-like protein compare
PGA1_c12550 +0.7 1.7 hypothetical protein compare
PGA1_c02440 +0.7 5.3 putative ATP-binding/permease fusion ABC transporter compare
PGA1_c02050 +0.6 2.2 acetylglutamate kinase ArgB compare
PGA1_c30580 +0.6 2.2 TIGR02300 family protein compare
PGA1_262p00250 +0.6 2.5 ferritin-like protein compare
PGA1_c02460 +0.6 5.0 hypothetical protein compare
PGA1_c02450 +0.6 4.5 putative outer membrane efflux protein compare
PGA1_c12580 +0.6 3.0 Uncharacterized protein conserved in bacteria (DUF2155). compare
PGA1_c20140 +0.6 3.3 putative arginine-tRNA-protein transferase compare
PGA1_c17790 +0.6 1.5 putative gene transfer agent protein compare
PGA1_c30660 +0.6 2.2 putative addiction module antidote protein, HigA family compare
PGA1_c14190 +0.5 3.1 putative transcriptional regulator, AraC family compare
PGA1_c14800 +0.5 1.7 nitrogen regulation protein NtrY compare
PGA1_c15590 +0.5 4.7 putative transcriptional activator protein compare
PGA1_c16360 +0.5 1.5 putative transriptional regulator, AsnC family compare
PGA1_c09050 +0.5 2.4 thiamine-phosphate pyrophosphorylase ThiE compare
PGA1_c11540 +0.5 1.0 gamma-glutamylputrescine synthetase PuuA compare
PGA1_c15790 +0.5 1.8 putative phosphate transporter, phosphate-binding protein compare
PGA1_c13340 +0.5 2.0 Accessory protein for co(II)balamin reduction (DUF1638) (EC:2.1.1.13) (from data) compare
PGA1_c34560 +0.5 4.2 ABC-type phosphate transport system, periplasmic component compare
PGA1_c05390 +0.5 2.3 glycosyl transferase compare
PGA1_c00610 +0.5 1.1 acetyltransferase, GNAT family compare
PGA1_c32520 +0.5 2.1 Protein of unknown function (DUF2938). compare
PGA1_c11830 +0.5 1.9 hypothetical protein compare
PGA1_c18340 +0.5 2.0 putative baseplate assembly protein W compare
PGA1_262p00660 +0.5 1.3 Predicted periplasmic protein compare
PGA1_78p00150 +0.5 0.9 putative HTH-type transcriptional regulator compare
PGA1_c01150 +0.5 3.5 transcriptional regulatory protein ChvI compare
PGA1_65p00450 +0.5 1.8 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c13350 +0.5 1.3 Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) (from data) compare
PGA1_78p00140 +0.5 0.8 Sugar phosphate isomerases/epimerases compare
PGA1_c31930 +0.5 3.4 putative transporter, MFS family compare
PGA1_c13510 +0.4 1.3 hypothetical protein compare
PGA1_262p01310 +0.4 2.3 putative flavin-containing monooxygenase compare
PGA1_c11490 +0.4 2.7 pyrimidine-specific ribonucleoside hydrolase RihA compare
PGA1_c10580 +0.4 2.3 ribonuclease J 1 compare
PGA1_262p01165 +0.4 1.2 hypothetical protein compare
PGA1_c20880 +0.4 1.5 molybdenum hydroxylase family protein, small subunit compare
PGA1_c08780 +0.4 1.2 hypothetical protein compare
PGA1_c14490 +0.4 0.9 Uncharacterized conserved small protein compare
PGA1_262p00920 +0.4 1.0 Membrane proteins related to metalloendopeptidases compare
PGA1_c17400 +0.4 2.0 Uncharacterized protein conserved in bacteria compare
PGA1_c31260 +0.4 3.9 Protein of unknown function (DUF3131). compare
PGA1_262p00710 +0.4 0.8 serine/threonine-protein kinase RsbT-like protein compare
PGA1_c24300 +0.4 2.4 Uracil-DNA glycosylase compare
PGA1_c26030 +0.4 0.7 transcriptional regulator, MarR family compare
PGA1_65p00370 +0.4 1.9 putative glycosyl transferase compare
PGA1_c22490 +0.4 1.3 hypothetical protein compare
PGA1_c17050 +0.4 1.3 N-acetyl-gamma-glutamyl-phosphate reductase ArgC compare
PGA1_c31270 +0.4 3.8 putative glycosyltransferase / polysaccharide deacetylase compare
PGA1_c33600 +0.4 0.8 hypothetical protein compare
PGA1_c34590 +0.4 2.4 putative peptidylprolyl isomerase compare
PGA1_c24320 +0.4 2.8 putative capsule polysaccharide export inner-membrane protein compare
PGA1_c17830 +0.4 1.6 putative gene transfer agent prohead protease compare
PGA1_c12300 +0.4 2.9 glucans biosynthesis glucosyltransferase H compare
PGA1_262p02010 +0.4 1.0 Uncharacterized conserved protein compare
PGA1_c02430 +0.4 2.6 type I secretion membrane fusion protein, HlyD family compare
PGA1_c08890 +0.4 2.4 putative capsule polysaccharide export outer membrane protein compare
PGA1_c14960 +0.4 2.0 putative transcriptional regulator compare
PGA1_c09470 +0.4 1.8 putative ATP-binding protein compare
PGA1_262p01360 +0.4 1.4 transcriptional regulator, LysR family compare
PGA1_c20000 +0.4 1.1 hypothetical protein compare
PGA1_c05400 +0.4 3.0 putative glycosyl transferase, family 2 compare
PGA1_c03290 +0.4 1.8 transcription elongation factor GreA compare
PGA1_c32670 +0.4 1.9 putative phosphoglycerate mutase family protein compare
PGA1_c10090 +0.4 1.9 YeeE/YedE family (DUF395). compare
PGA1_c34120 +0.4 1.3 HTH-type transcriptional regulator PetP compare
PGA1_c05380 +0.4 2.5 hypothetical protein compare
PGA1_c20890 +0.4 1.8 Molybdopterin biosynthesis enzyme compare
PGA1_c01270 +0.4 0.9 Hypoxia induced protein conserved region. compare
PGA1_c06140 +0.4 2.3 putative bacterial type II/III secretion system protein compare
PGA1_c06330 +0.4 2.2 putative ribosomal-protein-alanine acetyltransferase compare
PGA1_262p01250 +0.4 0.9 transcriptional regulator, crp family compare
PGA1_c13500 +0.4 1.2 hypothetical protein compare
PGA1_c02780 +0.4 2.6 Membrane-bound metallopeptidase compare
PGA1_c15660 +0.4 1.6 enoyl-CoA hydratase/isomerase family protein compare
PGA1_c12310 +0.4 2.4 glucans biosynthesis protein G compare
PGA1_262p01800 +0.4 2.0 putative membrane dipeptidase compare
PGA1_c12370 +0.4 2.1 YeeE/YedE family (DUF395). compare
PGA1_c20670 +0.4 1.6 TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, small permease component (from data) compare
PGA1_c17420 +0.4 1.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA compare
PGA1_c21060 +0.4 1.3 cold shock protein CspA compare
PGA1_c02900 +0.4 0.8 putative molybdopterin-converting factor subunit 1 compare
PGA1_c09960 +0.4 1.3 putative transcriptional regulator, TetR family compare
PGA1_65p00150 +0.4 1.2 Protein of unknown function (DUF2886). compare
PGA1_c31380 +0.4 1.2 hypothetical protein compare
PGA1_c23670 +0.4 1.8 Putative peptidoglycan binding domain. compare
PGA1_262p00090 +0.4 1.6 putative exopolysaccharide biosynthesis transport protein compare
PGA1_c07650 +0.4 2.5 hypothetical protein compare
PGA1_c06120 +0.4 2.4 Flp pilus assembly protein, ATPase CpaE compare
PGA1_c31210 +0.4 1.3 Protein of unknown function (DUF2948). compare
PGA1_c24820 +0.4 1.5 phenazine biosynthesis protein compare
PGA1_c31880 +0.4 3.3 signal transduction histidine kinase compare
PGA1_c03170 +0.4 1.7 hypothetical protein compare
PGA1_c29600 +0.4 1.9 hypothetical protein compare
PGA1_c15630 +0.4 2.1 putative aminoglycoside phosphotransferase compare
PGA1_c17020 +0.4 1.5 Protein of unknown function (DUF3154). compare
PGA1_c24840 +0.4 1.6 small heat shock protein IbpA compare
PGA1_c08420 +0.4 2.1 putative 3-hydroxyacyl-CoA dehydrogenase compare
PGA1_262p00050 +0.4 1.3 putative glycosyl transferase compare
PGA1_c04010 +0.4 0.8 putative universal stress protein compare
PGA1_c18570 +0.4 1.7 hypothetical protein compare
PGA1_c01160 +0.4 2.6 sensor protein ChvG compare
PGA1_c03080 +0.3 1.2 molybdenum cofactor biosynthesis protein B compare
PGA1_c11930 +0.3 1.3 Cytidine deaminase (EC 3.5.4.5) (from data) compare
PGA1_c17130 +0.3 1.6 hypothetical protein compare
PGA1_c19050 +0.3 1.0 hypothetical protein compare
PGA1_c17030 +0.3 1.1 peptidoglycan binding domain-containing protein compare
PGA1_c22370 +0.3 2.0 hypothetical protein compare
PGA1_c31780 +0.3 0.9 DNA polymerase I compare
PGA1_c03040 +0.3 1.8 hypothetical protein compare
PGA1_262p01420 +0.3 0.9 Protein of unknown function (DUF3726). compare
PGA1_c13750 +0.3 1.7 phosphopantetheine binding protein compare
PGA1_262p02100 +0.3 2.0 methyltransferase, cheR type compare
PGA1_c24220 +0.3 1.0 ornithine carbamoyltransferase ArgF compare
PGA1_78p00270 +0.3 1.0 lipoyl synthase LipA compare
PGA1_c34510 +0.3 2.4 hypothetical protein compare
PGA1_c34950 +0.3 1.7 putative branched-chain-amino-acid aminotransferase, subunit B compare
PGA1_c05290 +0.3 2.6 polysaccharide biosynthesis protein ExoT-like protein compare
PGA1_c21160 +0.3 1.9 putative metallopeptidase compare
PGA1_c15070 +0.3 1.9 Nickel uptake substrate-specific transmembrane region. compare
PGA1_262p01710 +0.3 1.4 putative glutathione transport system permease protein compare
PGA1_c03365 +0.3 1.4 Uncharacterized small protein compare
PGA1_c22150 +0.3 1.8 Uncharacterized proteins of the AP superfamily compare
PGA1_262p00750 +0.3 1.5 Threonine dehydratase compare
PGA1_c11470 +0.3 1.2 acetyltransferase domain-containing protein compare
PGA1_c08900 +0.3 1.8 putative capsule polysaccharide export protein KpsS compare
PGA1_c05470 +0.3 0.7 hydroxyisourate hydrolase compare
PGA1_c34710 +0.3 1.4 glutaredoxin GrxC compare
PGA1_c34230 +0.3 1.9 putative HTH-type transcriptional regulator, AraC family compare
PGA1_c23070 +0.3 1.8 putative ribose transport system permease protein compare
PGA1_c03210 +0.3 2.0 branched-chain amino acid transport protein azlD-like protein compare
PGA1_262p00290 +0.3 1.7 putative transcriptional regulator compare
PGA1_c05310 +0.3 2.1 putative glycosyl transferase compare
PGA1_c20960 +0.3 1.6 carboxylesterase bioH-like protein compare
PGA1_c26040 +0.3 1.5 hypothetical protein compare
PGA1_262p01630 +0.3 0.6 hypothetical protein compare
PGA1_78p00340 +0.3 0.8 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
PGA1_c05530 +0.3 1.7 putative allantoin catabolism protein compare
PGA1_c13890 +0.3 1.1 Predicted enzyme related to lactoylglutathione lyase compare
PGA1_262p00560 +0.3 1.2 uracil DNA glycosylase-like protein compare
PGA1_c25260 +0.3 1.3 PA14 domain. compare
PGA1_c18150 +0.3 2.0 Hemolysin-type calcium-binding repeat (2 copies). compare
PGA1_c28030 +0.3 1.5 Panthothenate kinase compare
PGA1_c05760 +0.3 1.0 putative tyrosine recombinase XerC compare
PGA1_c10350 +0.3 1.8 Predicted kinase compare
PGA1_c00790 +0.3 1.2 hypothetical protein compare
PGA1_c06640 +0.3 1.7 putative pyrimidine 5'-nucleotidase compare
PGA1_c22500 +0.3 1.3 hypothetical protein compare
PGA1_c06700 +0.3 1.8 Integral membrane protein compare
PGA1_c10670 +0.3 1.5 putative putrescine transport ATP-binding protein compare
PGA1_65p00110 +0.3 1.1 putative amino-acid ABC transporter, periplasmic solute-binding protein compare
PGA1_c17700 +0.3 1.4 hypothetical protein compare
PGA1_c03390 +0.3 2.0 acetoacetyl-CoA reductase PhaB compare
PGA1_c11810 +0.3 0.8 hypothetical protein compare
PGA1_c07490 +0.3 0.3 Putative sterol carrier protein compare
PGA1_c18300 +0.3 2.1 hypothetical protein compare
PGA1_c26570 +0.3 1.9 putative glyoxylate/hydroxypyruvate reductase A compare
PGA1_c31760 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
PGA1_c31170 +0.3 1.0 phosphotyrosine protein phosphatase-like protein compare
PGA1_c11460 +0.3 0.9 hypothetical protein compare
PGA1_262p00910 +0.3 1.1 putative cation transort protein compare
PGA1_c09140 +0.3 1.4 dethiobiotin synthetase BioD compare
PGA1_c24230 +0.3 1.7 acetylornithine aminotransferase ArgD compare
PGA1_c05360 +0.3 2.2 putative glycosyl transferase compare
PGA1_262p00070 +0.3 1.5 Lipid A core - O-antigen ligase and related enzymes compare
PGA1_c17200 +0.3 0.9 transcriptional regulator, TetR family compare
PGA1_c34200 +0.3 1.6 carnitinyl-CoA dehydratase CaiD compare
PGA1_c17660 +0.3 0.7 hypothetical protein compare
PGA1_c30410 +0.3 0.8 HTH-type transcriptional regulator, AsnC family compare
PGA1_262p00610 +0.3 0.4 metallophosphoesterase compare
PGA1_c06980 +0.3 0.6 hypothetical protein compare
PGA1_c11160 +0.3 1.0 putative beta-hexosaminidase compare


Specific Phenotypes

None in this experiment

For Phaeobacter inhibens DSM 17395 in stress experiments

For stress Furfuryl Alcohol across organisms