Experiment set7IT092 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM L-Carnitine

200 most important genes:

  gene name fitness t score description  
MMP_RS02145 -5.4 -9.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS02675 -4.9 -6.0 hypothetical protein compare
MMP_RS04710 -4.8 -3.2 hypothetical protein compare
MMP_RS07345 -4.7 -10.0 glycine synthesis protein GlyXL (from data) compare
MMP_RS01175 -4.6 -8.5 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS03315 -4.5 -2.6 ferrous iron transport protein A compare
MMP_RS01500 -4.4 -3.2 CBS domain-containing protein compare
MMP_RS06625 -4.3 -3.3 DNA primase compare
MMP_RS04455 -4.3 -27.2 nitrogenase subunit alpha compare
MMP_RS08720 -4.2 -3.5 4Fe-4S binding protein compare
MMP_RS04460 -4.2 -26.7 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS02010 -4.2 -13.1 PHP domain-containing protein compare
MMP_RS05500 -4.2 -12.1 2-isopropylmalate synthase compare
MMP_RS07185 -4.2 -16.3 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS04450 -4.1 -20.4 P-II family nitrogen regulator compare
MMP_RS06475 -4.1 -8.1 FAD-dependent oxidoreductase compare
MMP_RS06120 -4.1 -3.9 UPF0147 family protein compare
MMP_RS04465 -4.1 -24.5 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS04445 -4.0 -13.2 P-II family nitrogen regulator compare
MMP_RS02685 -4.0 -17.5 molybdate ABC transporter substrate-binding protein compare
MMP_RS04470 -4.0 -26.1 nitrogenase compare
MMP_RS07635 -4.0 -10.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS04440 -3.9 -16.5 nitrogenase iron protein compare
MMP_RS02670 -3.9 -17.0 ATP-binding cassette domain-containing protein compare
MMP_RS08715 -3.9 -3.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02680 -3.9 -8.9 ABC transporter permease compare
MMP_RS07845 -3.8 -2.3 LL-diaminopimelate aminotransferase compare
MMP_RS03700 -3.8 -12.9 sodium:proton antiporter compare
MMP_RS07735 -3.8 -1.3 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07365 -3.7 -14.7 2-phosphoglycerate kinase compare
MMP_RS00555 -3.7 -13.1 MFS transporter compare
MMP_RS03035 -3.6 -6.7 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01755 -3.6 -2.4 DUF2097 domain-containing protein compare
MMP_RS00455 -3.6 -14.7 orotate phosphoribosyltransferase-like protein compare
MMP_RS04890 -3.6 -1.2 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02245 -3.5 -5.9 hypothetical protein compare
MMP_RS01005 -3.5 -2.4 riboflavin synthase compare
MMP_RS06400 -3.5 -2.6 4Fe-4S binding protein compare
MMP_RS07525 -3.4 -9.0 4Fe-4S binding protein compare
MMP_RS04790 -3.4 -17.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS07390 -3.4 -3.9 cell division protein FtsZ compare
MMP_RS01925 -3.4 -14.9 DUF1616 domain-containing protein compare
MMP_RS01380 -3.3 -8.1 PHP domain-containing protein compare
MMP_RS00300 -3.3 -1.1 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06670 -3.3 -10.5 glucose-6-phosphate isomerase compare
MMP_RS08165 -3.3 -2.4 phosphoglycerate dehydrogenase compare
MMP_RS01225 -3.2 -9.1 DUF5379 domain-containing protein compare
MMP_RS08435 -3.1 -4.2 Era-like GTP-binding protein compare
MMP_RS01545 -3.1 -1.8 CBS domain-containing protein compare
MMP_RS01795 -3.0 -3.0 methanogenesis marker 6 protein compare
MMP_RS06285 -3.0 -3.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02730 -3.0 -17.6 ModD protein compare
MMP_RS01455 -3.0 -7.8 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS07075 -3.0 -6.3 phosphomannomutase/phosphoglucomutase compare
MMP_RS06730 -3.0 -2.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS02240 -3.0 -5.9 methanogenesis marker 7 protein compare
MMP_RS07730 -3.0 -3.1 pyruvate synthase subunit beta compare
MMP_RS01900 -3.0 -17.5 hypothetical protein compare
MMP_RS07630 -3.0 -2.9 ATP-binding cassette domain-containing protein compare
MMP_RS00915 -3.0 -11.0 DUF116 domain-containing protein compare
MMP_RS06270 -2.9 -7.9 TIGR00300 family protein compare
MMP_RS03110 -2.9 -11.4 glycosyltransferase family 2 protein compare
MMP_RS07605 -2.9 -5.9 diadenylate cyclase compare
MMP_RS07445 -2.9 -7.6 helix-turn-helix domain-containing protein compare
MMP_RS02345 -2.9 -5.4 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS07200 -2.8 -10.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00040 -2.8 -6.7 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS04685 -2.8 -5.0 DUF126 domain-containing protein compare
MMP_RS07435 -2.8 -3.3 GMP synthase subunit A compare
MMP_RS01955 -2.8 -5.4 hypothetical protein compare
MMP_RS06725 -2.8 -14.7 hypothetical protein compare
MMP_RS01975 -2.8 -17.8 hypothetical protein compare
MMP_RS03580 -2.8 -6.0 signal recognition particle-docking protein FtsY compare
MMP_RS01325 -2.7 -2.9 dihydroneopterin aldolase family protein compare
MMP_RS06295 -2.7 -11.8 methanogenesis marker 14 protein compare
MMP_RS02355 -2.7 -5.5 30S ribosomal protein S27ae compare
MMP_RS07355 -2.7 -1.6 transcription factor S compare
MMP_RS08500 -2.7 -9.2 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS01265 -2.7 -3.1 hypothetical protein compare
MMP_RS08790 -2.7 -3.4 translation initiation factor IF-2 subunit alpha compare
MMP_RS01905 -2.6 -16.8 glycosyltransferase compare
MMP_RS03600 -2.6 -3.1 triose-phosphate isomerase compare
MMP_RS05250 -2.6 -2.6 NFYB/HAP3 family transcription factor subunit compare
MMP_RS03435 -2.6 -2.4 ketol-acid reductoisomerase compare
MMP_RS08440 -2.6 -4.5 cell division protein SepF compare
MMP_RS03445 -2.6 -1.6 methanogenesis marker 17 protein compare
MMP_RS03450 -2.6 -2.9 glycine synthesis protein GlyXS (from data) compare
MMP_RS08650 -2.6 -4.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS05640 -2.6 -10.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS01830 -2.6 -2.6 tRNA-Val compare
MMP_RS05930 -2.6 -3.4 3-isopropylmalate dehydratase large subunit compare
MMP_RS07600 -2.5 -3.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01800 -2.5 -4.9 TIGR00303 family protein compare
MMP_RS01610 -2.5 -5.1 hypothetical protein compare
MMP_RS06630 -2.5 -1.2 UPF0058 family protein compare
MMP_RS04720 -2.4 -4.2 DedA family protein compare
MMP_RS03025 -2.4 -7.7 molybdenum cofactor guanylyltransferase compare
MMP_RS00685 -2.4 -7.0 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08645 -2.4 -10.0 UPF0179 family protein compare
MMP_RS00305 -2.4 -2.9 phosphoribosyl-ATP diphosphatase compare
MMP_RS05280 -2.4 -13.0 COG1361 S-layer family protein compare
MMP_RS01890 -2.4 -5.5 nucleotide sugar dehydrogenase compare
MMP_RS04585 -2.4 -12.8 AIR synthase related protein compare
MMP_RS00515 -2.4 -1.3 DUF655 domain-containing protein compare
MMP_RS05265 -2.4 -3.6 2-isopropylmalate synthase compare
MMP_RS02195 -2.3 -6.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01020 -2.3 -1.8 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03485 -2.3 -8.1 TIGR00267 family protein compare
MMP_RS08155 -2.3 -12.1 hypothetical protein compare
MMP_RS00310 -2.3 -8.4 CBS domain-containing protein compare
MMP_RS03960 -2.3 -1.7 hypothetical protein compare
MMP_RS02900 -2.3 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01960 -2.3 -1.7 hypothetical protein compare
MMP_RS05285 -2.3 -11.0 MMPL family transporter compare
MMP_RS06020 -2.3 -7.0 archaeoflavoprotein AfpA compare
MMP_RS05430 -2.2 -6.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS01880 -2.2 -8.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS01885 -2.2 -9.7 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS04605 -2.2 -5.2 cobalt ECF transporter T component CbiQ compare
MMP_RS01875 -2.2 -11.3 N-acetyltransferase compare
MMP_RS00810 -2.2 -9.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS05515 -2.2 -6.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS09020 -2.2 -2.8 hypothetical protein compare
MMP_RS07710 -2.1 -10.6 cell division protein FtsZ compare
MMP_RS08195 -2.1 -12.7 hypothetical protein compare
MMP_RS01970 -2.1 -13.0 TIGR04279 domain-containing protein compare
MMP_RS07420 -2.1 -5.1 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS00695 -2.1 -1.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05550 -2.1 -1.2 cation:proton antiporter compare
MMP_RS04780 -2.1 -4.5 ribonuclease P compare
MMP_RS05925 -2.1 -4.8 small nuclear ribonucleoprotein compare
MMP_RS01220 -2.0 -6.6 hypothetical protein compare
MMP_RS01915 -2.0 -12.8 DUF354 domain-containing protein compare
MMP_RS00985 -2.0 -6.3 CDC48 family AAA ATPase compare
MMP_RS08860 -2.0 -6.0 MinD/ParA family protein compare
MMP_RS05535 -2.0 -4.9 hypothetical protein compare
MMP_RS07090 -2.0 -8.5 tRNA (adenine-N1)-methyltransferase compare
MMP_RS01725 -1.9 -3.8 class I SAM-dependent methyltransferase family protein compare
MMP_RS06895 -1.9 -1.7 selenocysteine-specific translation elongation factor compare
MMP_RS04955 -1.9 -7.1 DNA topoisomerase I compare
MMP_RS08300 -1.9 -1.6 metal-sulfur cluster assembly factor compare
MMP_RS08635 -1.9 -2.5 UbiA family prenyltransferase compare
MMP_RS07875 -1.9 -5.9 hypothetical protein compare
MMP_RS07575 -1.9 -3.5 RNA ligase partner protein compare
MMP_RS02190 -1.9 -4.8 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS07955 -1.8 -6.1 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS06355 -1.8 -3.7 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05460 -1.8 -9.6 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS03015 -1.8 -6.4 GTP 3' 8-cyclase MoaA compare
MMP_RS04615 -1.8 -2.5 PDGLE domain-containing protein compare
MMP_RS06105 -1.8 -9.5 hydrogenase maturation peptidase HycI compare
MMP_RS06230 -1.8 -3.5 helix-turn-helix domain-containing protein compare
MMP_RS06600 -1.8 -1.8 class III signal peptide-containing protein compare
MMP_RS02800 -1.8 -7.6 nucleotidyltransferase domain-containing protein compare
MMP_RS05540 -1.8 -3.3 hypothetical protein compare
MMP_RS02135 -1.8 -4.5 DUF5612 domain-containing protein compare
MMP_RS01665 -1.8 -3.2 DUF2111 domain-containing protein compare
MMP_RS01910 -1.8 -10.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS06855 -1.7 -8.9 hypothetical protein compare
MMP_RS04090 -1.7 -4.1 hypothetical protein compare
MMP_RS03400 -1.7 -3.7 archease compare
MMP_RS05845 -1.7 -2.5 tRNA-intron lyase compare
MMP_RS04215 -1.7 -6.3 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS08785 -1.7 -1.3 RNA-protein complex protein Nop10 compare
MMP_RS07535 -1.7 -8.5 4Fe-4S binding protein compare
MMP_RS00720 -1.7 -7.5 metal-dependent hydrolase compare
MMP_RS03640 -1.6 -3.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS00730 -1.6 -7.1 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS00895 -1.6 -5.2 hypothetical protein compare
MMP_RS05875 -1.6 -6.2 hydroxyethylthiazole kinase compare
MMP_RS06940 -1.6 -3.8 polyprenyl diphosphate synthase compare
MMP_RS05765 -1.6 -5.7 M42 family metallopeptidase compare
MMP_RS04850 -1.6 -12.9 UPF0254 family protein compare
MMP_RS07555 -1.6 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS08660 -1.6 -9.2 DHH family phosphoesterase compare
MMP_RS02780 -1.6 -6.6 hypothetical protein compare
MMP_RS07750 -1.6 -4.9 DUF357 domain-containing protein compare
MMP_RS05920 -1.6 -0.5 50S ribosomal protein L37e compare
MMP_RS00060 -1.6 -2.2 3-dehydroquinate synthase II compare
MMP_RS07695 -1.6 -6.0 DUF3236 domain-containing protein compare
MMP_RS04900 -1.5 -12.4 hypothetical protein compare
MMP_RS06395 -1.5 -3.8 ThiF family adenylyltransferase compare
MMP_RS08350 -1.5 -1.2 hypothetical protein compare
MMP_RS05555 -1.5 -2.1 DUF4040 domain-containing protein compare
MMP_RS07700 -1.5 -8.7 DUF1188 domain-containing protein compare
MMP_RS01895 -1.5 -10.7 flippase compare
MMP_RS06975 -1.5 -2.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS08210 -1.5 -2.9 phosphatidylglycerophosphatase A compare
MMP_RS01700 -1.5 -1.0 dihydroxy-acid dehydratase compare
MMP_RS07380 -1.5 -1.9 transcription elongation factor Spt5 compare
MMP_RS07705 -1.5 -5.6 transcriptional regulator compare
MMP_RS00115 -1.5 -8.9 radical SAM protein compare
MMP_RS08705 -1.5 -5.7 sulfopyruvate decarboxylase subunit beta compare
MMP_RS01920 -1.5 -10.7 glycosyltransferase family 2 protein compare
MMP_RS05440 -1.4 -7.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS06375 -1.4 -3.8 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS00035 -1.4 -4.5 DUF2098 family protein compare
MMP_RS04500 -1.4 -10.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01385 -1.4 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS04785 -1.4 -7.8 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Carnitine hydrochloride in Methanococcus maripaludis S2

For nitrogen source L-Carnitine hydrochloride across organisms