Experiment set7IT090 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2335.1 -3.9 -3.8 Transport ATP-binding protein CydC compare
Xcc-8004.3054.1 -3.6 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3041.1 -3.3 -4.5 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.2921.1 -3.3 -3.2 ferrous iron transport protein compare
Xcc-8004.1651.1 -3.2 -7.8 putative Cytochrome bd2, subunit I compare
Xcc-8004.1652.1 -3.1 -10.2 putative Cytochrome bd2, subunit II compare
Xcc-8004.2182.1 -3.1 -13.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2334.1 -3.1 -7.9 Transport ATP-binding protein CydD compare
Xcc-8004.3979.1 -2.8 -9.8 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.4620.1 -2.6 -7.6 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1660.1 -2.5 -1.2 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.2861.1 -2.5 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.3976.1 -2.5 -3.7 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1241.1 -2.4 -5.5 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.574.1 -2.4 -7.6 Di-/tripeptide transporter compare
Xcc-8004.1359.1 -2.3 -6.5 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3576.1 -2.3 -7.6 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.1727.1 -2.3 -2.9 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.2922.1 -2.2 -2.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.2652.1 -2.0 -2.0 response regulator compare
Xcc-8004.1365.1 -2.0 -1.5 FIG01211058: hypothetical protein compare
Xcc-8004.4039.1 -2.0 -2.9 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.5368.1 -1.9 -2.5 FIG01210868: hypothetical protein compare
Xcc-8004.3674.1 -1.9 -3.6 FIG01209931: hypothetical protein compare
Xcc-8004.2923.1 -1.9 -6.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.2055.1 -1.8 -1.9 Mobile element protein compare
Xcc-8004.4046.1 -1.8 -8.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4170.1 -1.8 -2.4 LSU ribosomal protein L25p compare
Xcc-8004.5189.1 -1.8 -2.7 FIG01212821: hypothetical protein compare
Xcc-8004.2920.1 -1.8 -7.3 Ferrous iron transport protein B compare
Xcc-8004.130.1 -1.8 -5.2 hypothetical protein compare
Xcc-8004.1809.1 -1.8 -2.0 extracellular serine protease compare
Xcc-8004.1236.1 -1.8 -4.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.950.1 -1.8 -1.4 General secretion pathway protein L compare
Xcc-8004.3211.1 -1.8 -2.4 protein of unknown function DUF88 compare
Xcc-8004.3346.1 -1.8 -2.9 hypothetical protein compare
Xcc-8004.3040.1 -1.7 -2.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.1790.1 -1.7 -2.4 Zinc uptake regulation protein ZUR compare
Xcc-8004.3728.1 -1.7 -1.3 hypothetical protein compare
Xcc-8004.5202.1 -1.7 -4.2 Twin-arginine translocation protein TatC compare
Xcc-8004.2343.1 -1.6 -1.9 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.3492.1 -1.6 -1.3 FIG01211425: hypothetical protein compare
Xcc-8004.5343.1 -1.6 -5.9 hypothetical protein compare
Xcc-8004.1955.1 -1.6 -5.7 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.3310.1 -1.6 -3.6 Chromosome partition protein smc compare
Xcc-8004.2199.1 -1.6 -1.6 Hemerythrin-like protein PA1673 compare
Xcc-8004.1880.1 -1.5 -6.8 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.1615.1 -1.5 -1.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.623.1 -1.5 -1.6 Phosphoserine phosphatase compare
Xcc-8004.2337.1 -1.5 -4.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4810.1 -1.5 -6.8 hypothetical protein compare
Xcc-8004.3103.1 -1.5 -1.7 hypothetical protein compare
Xcc-8004.1961.1 -1.5 -1.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.2011.1 -1.5 -1.2 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.3647.1 -1.5 -4.1 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.3676.1 -1.4 -2.8 Translation elongation factor LepA compare
Xcc-8004.3395.1 -1.4 -2.5 Transcriptional regulator, GntR family compare
Xcc-8004.1162.1 -1.4 -2.5 FIG01210644: hypothetical protein compare
Xcc-8004.565.1 -1.4 -4.5 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.4954.1 -1.4 -5.7 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.2339.1 -1.4 -1.8 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.3775.1 -1.4 -2.2 FIG001154: CcsA-related protein compare
Xcc-8004.3703.1 -1.4 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3049.1 -1.4 -5.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1437.1 -1.4 -4.3 Kup system potassium uptake protein compare
Xcc-8004.1243.1 -1.4 -4.9 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.321.1 -1.4 -8.4 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.318.1 -1.3 -4.0 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.3723.1 -1.3 -2.0 hypothetical protein compare
Xcc-8004.4596.1 -1.3 -6.3 hypothetical protein compare
Xcc-8004.409.1 -1.3 -3.3 hypothetical protein compare
Xcc-8004.2924.1 -1.3 -4.0 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.1137.1 -1.3 -1.4 FIG006231: RNA-binding protein compare
Xcc-8004.3320.1 -1.3 -1.3 FIG01209869: hypothetical protein compare
Xcc-8004.2711.1 -1.3 -1.6 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.3281.1 -1.3 -5.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.3187.1 -1.3 -4.2 Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE compare
Xcc-8004.2497.1 -1.2 -0.8 Mobile element protein compare
Xcc-8004.2228.1 -1.2 -3.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.601.1 -1.2 -5.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.178.1 -1.2 -1.3 hypothetical protein compare
Xcc-8004.1601.1 -1.2 -4.2 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.3954.1 -1.2 -3.1 HflC protein compare
Xcc-8004.990.1 -1.2 -2.2 FIG01210796: hypothetical protein compare
Xcc-8004.319.1 -1.2 -5.7 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.1228.1 -1.2 -5.1 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.3686.1 -1.2 -4.7 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.3855.1 -1.1 -4.6 FIG01209965: hypothetical protein compare
Xcc-8004.315.1 -1.1 -2.5 FIG01211941: hypothetical protein compare
Xcc-8004.1436.1 -1.1 -1.3 Holliday junction DNA helicase RuvA compare
Xcc-8004.4105.1 -1.1 -2.3 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.1720.1 -1.1 -2.4 UPF0301 protein YqgE compare
Xcc-8004.957.1 -1.1 -1.6 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1082.1 -1.1 -1.5 FIG01211203: hypothetical protein compare
Xcc-8004.837.1 -1.1 -1.5 FIG01210690: hypothetical protein compare
Xcc-8004.465.1 -1.1 -2.1 Transcriptional regulator PobR, AraC family compare
Xcc-8004.1914.1 -1.1 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.127.1 -1.1 -1.3 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4283.1 -1.1 -0.6 Diacylglycerol kinase (EC 2.7.1.107) compare
Xcc-8004.1027.1 -1.1 -1.0 Two-component system sensor protein compare
Xcc-8004.1747.1 -1.1 -2.1 FIG01210249: hypothetical protein compare
Xcc-8004.1058.1 -1.1 -1.7 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.571.1 -1.1 -5.7 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Xcc-8004.2282.1 -1.1 -2.5 tRNA:Cm32/Um32 methyltransferase compare
Xcc-8004.2935.1 -1.1 -7.8 Amino acid transporters compare
Xcc-8004.5125.1 -1.1 -2.3 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.576.1 -1.1 -1.7 FIG01210281: hypothetical protein compare
Xcc-8004.1677.1 -1.1 -3.0 FIG01209993: hypothetical protein compare
Xcc-8004.3982.1 -1.0 -3.9 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.3687.1 -1.0 -3.0 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.1959.1 -1.0 -1.1 hypothetical protein compare
Xcc-8004.3688.1 -1.0 -4.7 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare
Xcc-8004.5297.1 -1.0 -2.2 Thioredoxin reductase (EC 1.8.1.9) compare
Xcc-8004.5087.1 -1.0 -1.8 FIG027190: Putative transmembrane protein compare
Xcc-8004.3459.1 -1.0 -1.9 FIG01212836: hypothetical protein compare
Xcc-8004.4275.1 -1.0 -3.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.683.1 -1.0 -1.4 hypothetical protein compare
Xcc-8004.659.1 -1.0 -1.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.4976.1 -1.0 -6.8 hypothetical protein compare
Xcc-8004.2879.1 -1.0 -0.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.5024.1 -1.0 -2.1 FIG01210241: hypothetical protein compare
Xcc-8004.271.1 -1.0 -2.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.287.1 -1.0 -2.5 Haloalkane dehalogenase-like protein compare
Xcc-8004.3119.1 -1.0 -2.7 GTP-binding protein HflX compare
Xcc-8004.1244.1 -1.0 -4.2 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.3660.1 -1.0 -2.4 Cold shock protein CspD compare
Xcc-8004.3479.1 -1.0 -1.1 aklaviketone reductase compare
Xcc-8004.2449.1 -1.0 -3.0 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.1166.1 -1.0 -3.6 FIG01210744: hypothetical protein compare
Xcc-8004.3783.1 -0.9 -3.7 Two-component system sensor protein compare
Xcc-8004.1710.1 -0.9 -2.8 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.1838.1 -0.9 -1.0 FIG002958: hypothetical protein compare
Xcc-8004.570.1 -0.9 -5.3 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) compare
Xcc-8004.4221.1 -0.9 -2.9 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.1007.1 -0.9 -0.7 acetylxylan esterase compare
Xcc-8004.494.1 -0.9 -3.4 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.805.1 -0.9 -1.4 Zinc transport protein ZntB compare
Xcc-8004.2358.1 -0.9 -3.7 Segregation and condensation protein A compare
Xcc-8004.4294.1 -0.9 -3.1 membrane protein, putative compare
Xcc-8004.2290.1 -0.9 -3.2 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Xcc-8004.721.1 -0.9 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4956.1 -0.9 -2.7 Cytochrome B561 compare
Xcc-8004.4848.1 -0.9 -5.2 Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) compare
Xcc-8004.3612.1 -0.9 -0.9 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.1514.1 -0.9 -1.8 L-asparaginase (EC 3.5.1.1) compare
Xcc-8004.2259.1 -0.9 -2.8 PhbF compare
Xcc-8004.3473.1 -0.9 -1.0 FIG01213437: hypothetical protein compare
Xcc-8004.787.1 -0.9 -0.7 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.3689.1 -0.9 -3.8 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
Xcc-8004.5114.1 -0.9 -3.5 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.4285.1 -0.8 -4.2 two-component system sensor protein compare
Xcc-8004.4065.1 -0.8 -3.7 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.280.1 -0.8 -2.8 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.2012.1 -0.8 -2.5 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.970.1 -0.8 -2.1 Probable cytochrome c2 compare
Xcc-8004.4824.1 -0.8 -4.3 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1718.1 -0.8 -1.4 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.629.1 -0.8 -2.2 hypothetical protein compare
Xcc-8004.337.1 -0.8 -1.9 ATPase, AFG1 family compare
Xcc-8004.2989.1 -0.8 -2.0 hypothetical protein compare
Xcc-8004.3752.1 -0.8 -1.0 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.3759.1 -0.8 -2.0 hypothetical protein compare
Xcc-8004.3313.1 -0.8 -2.0 LSU ribosomal protein L9p compare
Xcc-8004.619.1 -0.8 -2.2 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) compare
Xcc-8004.1023.1 -0.8 -3.5 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.4719.1 -0.8 -1.7 Diguanylate cyclase (GGDEF domain) with GAF sensor compare
Xcc-8004.1871.1 -0.8 -2.1 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.4099.1 -0.8 -2.7 hypothetical protein compare
Xcc-8004.3948.1 -0.8 -2.6 FIG01211207: hypothetical protein compare
Xcc-8004.1170.1 -0.8 -3.1 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.4373.1 -0.8 -2.0 LppC putative lipoprotein compare
Xcc-8004.3128.1 -0.8 -3.1 COGs COG3737 compare
Xcc-8004.3792.1 -0.8 -0.7 Mobile element protein compare
Xcc-8004.459.1 -0.8 -1.2 4-hydroxybenzoate transporter compare
Xcc-8004.205.1 -0.8 -4.2 Ribose operon repressor compare
Xcc-8004.1398.1 -0.8 -4.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Xcc-8004.461.1 -0.8 -1.9 Transcriptional regulator, MarR family compare
Xcc-8004.4499.1 -0.8 -1.6 Mobile element protein compare
Xcc-8004.5366.1 -0.8 -4.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.2529.1 -0.8 -2.0 FIG01210734: hypothetical protein compare
Xcc-8004.2346.1 -0.8 -1.2 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.1326.1 -0.8 -2.2 hypothetical protein compare
Xcc-8004.791.1 -0.7 -1.5 FIG01211375: hypothetical protein compare
Xcc-8004.482.1 -0.7 -2.0 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Xcc-8004.5073.1 -0.7 -2.4 FIG01210860: hypothetical protein compare
Xcc-8004.2217.1 -0.7 -1.6 FIG01209779: hypothetical protein compare
Xcc-8004.4844.1 -0.7 -0.5 FIG01210764: hypothetical protein compare
Xcc-8004.5252.1 -0.7 -2.1 FIG01210658: hypothetical protein compare
Xcc-8004.2620.1 -0.7 -3.7 NfuA Fe-S protein maturation compare
Xcc-8004.4747.1 -0.7 -3.1 Protein of unknown function Smg compare
Xcc-8004.4478.1 -0.7 -4.3 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Xcc-8004.666.1 -0.7 -2.2 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase-related protein compare
Xcc-8004.781.1 -0.7 -2.4 inner membrane protein compare
Xcc-8004.4375.1 -0.7 -1.7 Putative membrane-bound metal-dependent hydrolases compare
Xcc-8004.3566.1 -0.7 -2.1 FIG01211130: hypothetical protein compare
Xcc-8004.3726.1 -0.7 -1.0 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.2319.1 -0.7 -1.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.5128.1 -0.7 -2.5 Cobalt-zinc-cadmium resistance protein CzcD compare
Xcc-8004.4416.1 -0.7 -3.7 hypothetical protein compare
Xcc-8004.3710.1 -0.7 -0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments