Experiment set7IT090 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -6.9 -4.8 Tol-Pal system protein TolB compare
IAI47_00655 -6.0 -7.2 glycosyltransferase family 4 protein compare
IAI47_15635 -5.9 -4.1 RNA polymerase-binding protein DksA compare
IAI47_17000 -5.1 -11.9 lipoprotein NlpI compare
IAI47_13700 -5.1 -6.0 Tol-Pal system protein TolQ compare
IAI47_08705 -4.7 -3.2 carboxy terminal-processing peptidase compare
IAI47_09040 -4.3 -2.9 NAD-dependent epimerase compare
IAI47_08085 -4.2 -5.8 helix-turn-helix domain-containing protein compare
IAI47_12280 -4.2 -14.6 glucan biosynthesis protein G compare
IAI47_12275 -4.1 -21.7 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_10845 -4.0 -5.5 major outer membrane lipoprotein compare
IAI47_12930 -3.9 -5.4 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_16390 -3.9 -1.6 tRNA-Leu compare
IAI47_08700 -3.8 -7.6 RNA chaperone ProQ compare
IAI47_05070 -3.6 -1.5 outer membrane protein assembly factor BamB compare
IAI47_08440 -3.5 -3.3 crossover junction endodeoxyribonuclease RuvC compare
IAI47_09235 -3.4 -3.3 type I DNA topoisomerase compare
IAI47_00780 -3.4 -5.1 6-phosphofructokinase compare
IAI47_18480 -3.3 -11.0 lipid III flippase WzxE compare
IAI47_18400 -3.2 -3.1 tyrosine recombinase XerC compare
IAI47_15485 -3.1 -2.0 molecular chaperone Skp compare
IAI47_13695 -3.0 -1.2 colicin uptake protein TolR compare
IAI47_18830 -3.0 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_13885 -3.0 -2.8 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_12925 -3.0 -5.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_17965 -2.9 -13.5 glucose-6-phosphate isomerase compare
IAI47_17155 -2.9 -13.1 calcium/sodium antiporter compare
IAI47_16085 -2.8 -2.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_07020 -2.7 -1.8 hypothetical protein compare
IAI47_04895 -2.7 -5.3 pyridoxine 5'-phosphate synthase compare
IAI47_15595 -2.6 -2.9 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_18055 -2.5 -6.9 DNA-binding protein HU-alpha compare
IAI47_17005 -2.5 -7.4 polyribonucleotide nucleotidyltransferase compare
IAI47_09055 -2.5 -13.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_07025 -2.5 -7.9 glycosyltransferase family 4 protein compare
IAI47_11760 -2.5 -1.7 TonB-dependent siderophore receptor compare
IAI47_09580 -2.4 -4.6 FNR family transcription factor compare
IAI47_04120 -2.4 -15.3 GTP diphosphokinase compare
IAI47_13415 -2.4 -12.3 L,D-transpeptidase family protein compare
IAI47_03725 -2.4 -8.0 phosphoglycerate dehydrogenase compare
IAI47_12865 -2.4 -10.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_21595 -2.3 -11.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_00760 -2.3 -4.7 envelope stress response regulator transcription factor CpxR compare
IAI47_12470 -2.2 -13.7 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_00300 -2.2 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_12885 -2.2 -9.6 pyruvate formate lyase 1-activating protein compare
IAI47_08450 -2.1 -3.5 Holliday junction branch migration DNA helicase RuvB compare
IAI47_06565 -2.1 -2.4 YejL family protein compare
IAI47_18470 -2.1 -11.7 ECA oligosaccharide polymerase compare
IAI47_16420 -2.1 -12.6 LacI family DNA-binding transcriptional regulator compare
IAI47_17560 -2.0 -2.0 ROK family transcriptional regulator compare
IAI47_05155 -2.0 -14.0 polyphosphate kinase 1 compare
IAI47_00940 -2.0 -8.7 HTH-type transcriptional repressor FabR compare
IAI47_13690 -2.0 -0.8 cell envelope integrity protein TolA compare
IAI47_01000 -2.0 -13.3 HTH-type transcriptional regulator HdfR compare
IAI47_07015 -2.0 -6.8 ABC transporter ATP-binding protein compare
IAI47_11310 -2.0 -4.1 redox-regulated ATPase YchF compare
IAI47_16350 -2.0 -7.7 phosphoserine phosphatase compare
IAI47_06245 -2.0 -3.8 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_11415 -1.9 -2.5 hypothetical protein compare
IAI47_17235 -1.9 -10.8 stringent starvation protein A compare
IAI47_00465 -1.8 -3.8 ribosome-dependent GTPase TypA compare
IAI47_13725 -1.8 -6.5 cytochrome ubiquinol oxidase subunit I compare
IAI47_09305 -1.8 -3.6 cyclic di-GMP phosphodiesterase compare
IAI47_11830 -1.8 -7.5 muramoyltetrapeptide carboxypeptidase compare
IAI47_01475 -1.8 -8.4 MurR/RpiR family transcriptional regulator compare
IAI47_16995 -1.8 -2.6 protein YrbN compare
IAI47_12880 -1.8 -12.9 formate C-acetyltransferase compare
IAI47_15970 -1.8 -2.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_04110 -1.7 -14.8 two-component sensor histidine kinase BarA compare
IAI47_15540 -1.7 -10.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_09360 -1.7 -1.6 peptide ABC transporter ATP-binding protein SapF compare
IAI47_07165 -1.7 -2.3 exodeoxyribonuclease I compare
IAI47_00375 -1.7 -14.0 ribose operon transcriptional repressor RbsR compare
IAI47_08355 -1.6 -3.8 flagellar protein FlhE compare
IAI47_07180 -1.6 -7.1 DUF496 family protein compare
IAI47_21600 -1.6 -3.4 EamA family transporter compare
IAI47_18490 -1.6 -3.9 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_00460 -1.6 -2.5 glutamate--ammonia ligase compare
IAI47_13625 -1.5 -7.1 CDF family zinc transporter ZitB compare
IAI47_13770 -1.5 -8.7 citrate synthase compare
IAI47_06235 -1.5 -5.2 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_03820 -1.5 -3.4 site-specific tyrosine recombinase XerD compare
IAI47_07030 -1.5 -6.1 HAD family hydrolase compare
IAI47_03550 -1.5 -9.0 membrane-bound lytic murein transglycosylase MltC compare
IAI47_04805 -1.4 -4.1 outer membrane protein assembly factor BamE compare
IAI47_12305 -1.4 -6.8 hypothetical protein compare
IAI47_06915 -1.4 -7.9 outer membrane assembly protein AsmA compare
IAI47_16520 -1.4 -8.2 hypothetical protein compare
IAI47_03375 -1.4 -7.6 peptide chain release factor 3 compare
IAI47_01005 -1.4 -8.4 DUF413 domain-containing protein compare
IAI47_07350 -1.4 -1.0 hypothetical protein compare
IAI47_18520 -1.4 -10.8 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_05090 -1.4 -2.6 hypothetical protein compare
IAI47_13720 -1.4 -2.7 cytochrome d ubiquinol oxidase subunit II compare
IAI47_06965 -1.3 -1.9 glycosyltransferase family 2 protein compare
IAI47_04300 -1.3 -5.2 recombinase RecA compare
IAI47_12920 -1.3 -3.3 thioredoxin-disulfide reductase compare
IAI47_07010 -1.3 -2.7 ABC transporter permease compare
IAI47_17020 -1.3 -2.9 30S ribosome-binding factor RbfA compare
IAI47_10520 -1.3 -2.8 pyridoxamine 5'-phosphate oxidase compare
IAI47_18415 -1.3 -2.5 lipoprotein compare
IAI47_03680 -1.2 -8.2 transketolase compare
IAI47_13925 -1.2 -1.7 tRNA-Met compare
IAI47_12565 -1.2 -8.0 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_13180 -1.2 -4.1 manganese-binding transcriptional regulator MntR compare
IAI47_13050 -1.1 -3.2 YbjN domain-containing protein compare
IAI47_18530 -1.1 -2.7 thioredoxin TrxA compare
IAI47_12645 -1.1 -3.2 porin OmpA compare
IAI47_05325 -1.1 -2.9 DUF1471 domain-containing protein compare
IAI47_17165 -1.1 -6.6 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_11995 -1.1 -4.0 beta-N-acetylhexosaminidase compare
IAI47_01750 -1.1 -4.9 glycerol-3-phosphate dehydrogenase compare
IAI47_08500 -1.1 -4.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
IAI47_17185 -1.1 -4.5 RNA polymerase factor sigma-54 compare
IAI47_16415 -1.0 -7.0 nucleoside hydrolase compare
IAI47_18705 -1.0 -6.5 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_00895 -1.0 -8.2 phosphoenolpyruvate carboxylase compare
IAI47_05050 -1.0 -4.6 cytoskeleton protein RodZ compare
IAI47_05425 -1.0 -3.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_06120 -1.0 -1.9 YfcZ/YiiS family protein compare
IAI47_20595 -1.0 -3.3 GhoT/OrtT family toxin compare
IAI47_14640 -1.0 -3.0 DNA-binding protein HU-beta compare
IAI47_05035 -1.0 -1.9 nucleoside-diphosphate kinase compare
IAI47_16990 -1.0 -3.0 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_00445 -1.0 -6.6 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_00675 -1.0 -7.5 glycosyltransferase family 9 protein compare
IAI47_00500 -1.0 -7.5 ATP-dependent DNA helicase RecG compare
IAI47_00330 -1.0 -7.6 low affinity potassium transporter Kup compare
IAI47_13890 -0.9 -5.2 ROK family transcriptional regulator compare
IAI47_07475 -0.9 -0.9 hypothetical protein compare
IAI47_19550 -0.9 -1.2 DUF1471 domain-containing protein compare
IAI47_02040 -0.9 -4.0 peptidylprolyl isomerase compare
IAI47_04830 -0.9 -2.3 autonomous glycyl radical cofactor GrcA compare
IAI47_06240 -0.9 -3.9 aspartate-semialdehyde dehydrogenase compare
IAI47_02345 -0.9 -1.5 5S ribosomal RNA compare
IAI47_03615 -0.9 -5.1 glutathione synthase compare
IAI47_14945 -0.9 -2.3 pyrroline-5-carboxylate reductase compare
IAI47_06030 -0.9 -3.2 hypothetical protein compare
IAI47_16195 -0.9 -5.3 transaldolase compare
IAI47_19685 -0.9 -2.9 hypothetical protein compare
IAI47_06135 -0.9 -2.5 phosphohistidine phosphatase SixA compare
IAI47_02260 -0.9 -4.2 Zn(2+)-responsive transcriptional regulator compare
IAI47_12605 -0.9 -5.0 CoA-binding protein compare
IAI47_00410 -0.8 -6.2 molybdenum cofactor guanylyltransferase MobA compare
IAI47_10340 -0.8 -2.9 mannose-6-phosphate isomerase compare
IAI47_11450 -0.8 -3.1 ankyrin repeat domain-containing protein compare
IAI47_09170 -0.8 -5.5 tryptophan synthase subunit beta compare
IAI47_21610 -0.8 -5.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_08445 -0.8 -0.8 Holliday junction branch migration protein RuvA compare
IAI47_00455 -0.8 -4.5 nitrogen regulation protein NR(II) compare
IAI47_12655 -0.8 -5.5 Lon protease family protein compare
IAI47_11420 -0.8 -1.7 hypothetical protein compare
IAI47_16080 -0.8 -3.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_08960 -0.8 -4.0 bifunctional nicotinamidase/pyrazinamidase compare
IAI47_07380 -0.8 -2.9 ABC transporter ATP-binding protein compare
IAI47_05510 -0.8 -5.0 putative DNA-binding transcriptional regulator compare
IAI47_17255 -0.8 -1.4 DUF1043 family protein compare
IAI47_00755 -0.8 -5.4 envelope stress sensor histidine kinase CpxA compare
IAI47_00450 -0.8 -5.6 nitrogen regulation protein NR(I) compare
IAI47_11550 -0.8 -1.2 hypothetical protein compare
IAI47_03645 -0.8 -6.1 O-antigen ligase family protein compare
IAI47_10840 -0.8 -2.3 pyruvate kinase PykF compare
IAI47_10790 -0.8 -2.1 YnhF family membrane protein compare
IAI47_09400 -0.8 -2.3 envelope stress response membrane protein PspB compare
IAI47_19890 -0.8 -1.5 hypothetical protein compare
IAI47_00110 -0.8 -3.5 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_18015 -0.8 -5.5 homoserine O-succinyltransferase compare
IAI47_09340 -0.7 -4.6 DUF1275 domain-containing protein compare
IAI47_09095 -0.7 -2.4 YciU family protein compare
IAI47_11475 -0.7 -0.8 hypothetical protein compare
IAI47_05080 -0.7 -2.5 zinc ribbon domain-containing protein compare
IAI47_17700 -0.7 -4.7 N-acetylmuramic acid 6-phosphate etherase compare
IAI47_07040 -0.7 -1.9 acyltransferase compare
IAI47_00670 -0.7 -5.5 sugar glycosyltransferase compare
IAI47_03640 -0.7 -5.3 glycosyltransferase compare
IAI47_08430 -0.7 -1.8 dihydroneopterin triphosphate diphosphatase compare
IAI47_13475 -0.7 -2.1 molybdopterin synthase catalytic subunit MoaE compare
IAI47_18250 -0.7 -4.2 transcription/translation regulatory transformer protein RfaH compare
IAI47_07450 -0.7 -1.3 winged helix-turn-helix domain-containing protein compare
IAI47_04870 -0.7 -3.0 elongation factor 4 compare
IAI47_16355 -0.7 -4.8 YtjB family periplasmic protein compare
IAI47_16365 -0.7 -3.6 ribosomal protein S18-alanine N-acetyltransferase compare
IAI47_13145 -0.7 -3.7 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_19945 -0.7 -0.7 hypothetical protein compare
IAI47_02600 -0.7 -4.7 FtsH protease activity modulator HflK compare
IAI47_04425 -0.7 -3.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_04695 -0.7 -2.8 hypothetical protein compare
IAI47_08855 -0.7 -2.4 septum site-determining protein MinC compare
IAI47_02705 -0.7 -4.3 DUF1107 domain-containing protein compare
IAI47_10935 -0.7 -3.3 vitamin B12 ABC transporter ATP-binding protein BtuD compare
IAI47_01650 -0.7 -4.8 gluconate operon transcriptional repressor GntR compare
IAI47_13065 -0.7 -1.2 DUF1418 family protein compare
IAI47_14585 -0.7 -3.5 P-II family nitrogen regulator compare
IAI47_07360 -0.7 -1.7 hypothetical protein compare
IAI47_08485 -0.6 -4.0 pyruvate kinase compare
IAI47_10320 -0.6 -0.3 Rrf2 family transcriptional regulator compare
IAI47_07070 -0.6 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_07085 -0.6 -4.2 histidinol-phosphate transaminase compare
IAI47_19675 -0.6 -1.3 ParD-like family protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50 across organisms