Experiment set7IT089 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.3041.1 -5.3 -3.6 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.3721.1 -5.1 -2.4 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.787.1 -4.9 -1.3 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.1652.1 -4.7 -9.9 putative Cytochrome bd2, subunit II compare
Xcc-8004.4322.1 -4.5 -1.7 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.2652.1 -4.4 -2.5 response regulator compare
Xcc-8004.2921.1 -4.0 -2.7 ferrous iron transport protein compare
Xcc-8004.3728.1 -3.7 -2.3 hypothetical protein compare
Xcc-8004.94.1 -3.6 -1.4 Transcriptional regulator, LuxR family compare
Xcc-8004.3451.1 -3.3 -3.0 hypothetical protein compare
Xcc-8004.165.1 -3.2 -1.2 hypothetical protein compare
Xcc-8004.3322.1 -3.2 -1.7 FIG01211446: hypothetical protein compare
Xcc-8004.1651.1 -3.2 -7.3 putative Cytochrome bd2, subunit I compare
Xcc-8004.4039.1 -3.0 -3.4 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.2182.1 -2.9 -14.2 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.1135.1 -2.8 -2.6 FIG01210448: hypothetical protein compare
Xcc-8004.2922.1 -2.8 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.3321.1 -2.7 -2.1 FIG01209847: hypothetical protein compare
Xcc-8004.689.1 -2.7 -1.7 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.3742.1 -2.7 -2.6 Type III effector compare
Xcc-8004.2335.1 -2.7 -5.3 Transport ATP-binding protein CydC compare
Xcc-8004.1720.1 -2.7 -2.6 UPF0301 protein YqgE compare
Xcc-8004.3979.1 -2.7 -10.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.2334.1 -2.6 -6.6 Transport ATP-binding protein CydD compare
Xcc-8004.340.1 -2.6 -2.7 Organic hydroperoxide resistance protein compare
Xcc-8004.1241.1 -2.6 -3.7 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3855.1 -2.6 -8.5 FIG01209965: hypothetical protein compare
Xcc-8004.3498.1 -2.5 -0.9 hypothetical protein compare
Xcc-8004.4477.1 -2.5 -2.0 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.4596.1 -2.5 -7.8 hypothetical protein compare
Xcc-8004.4620.1 -2.5 -7.6 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2228.1 -2.4 -6.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.4697.1 -2.4 -2.9 FIG01210654: hypothetical protein compare
Xcc-8004.2059.1 -2.4 -1.6 hypothetical protein compare
Xcc-8004.574.1 -2.4 -7.7 Di-/tripeptide transporter compare
Xcc-8004.1615.1 -2.4 -1.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.3576.1 -2.4 -7.0 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.1236.1 -2.3 -5.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.704.1 -2.3 -2.8 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) compare
Xcc-8004.1372.1 -2.3 -1.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1955.1 -2.2 -4.9 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.4884.1 -2.1 -2.3 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.3723.1 -2.1 -2.4 hypothetical protein compare
Xcc-8004.130.1 -2.1 -4.9 hypothetical protein compare
Xcc-8004.1790.1 -2.0 -2.9 Zinc uptake regulation protein ZUR compare
Xcc-8004.2422.1 -2.0 -2.8 Putative stress-responsive transcriptional regulator compare
Xcc-8004.3976.1 -2.0 -3.0 2-methylaconitate cis-trans isomerase compare
Xcc-8004.4810.1 -2.0 -7.4 hypothetical protein compare
Xcc-8004.3710.1 -2.0 -1.6 hypothetical protein compare
Xcc-8004.957.1 -2.0 -2.9 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.2923.1 -1.9 -6.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.3703.1 -1.9 -0.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1437.1 -1.9 -5.3 Kup system potassium uptake protein compare
Xcc-8004.2259.1 -1.9 -5.2 PhbF compare
Xcc-8004.1839.1 -1.8 -1.6 FIG01210863: hypothetical protein compare
Xcc-8004.948.1 -1.8 -1.7 General secretion pathway protein J compare
Xcc-8004.2497.1 -1.8 -0.8 Mobile element protein compare
Xcc-8004.1359.1 -1.7 -4.0 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4368.1 -1.7 -1.9 FIG01209977: hypothetical protein compare
Xcc-8004.1727.1 -1.7 -2.2 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.2833.1 -1.7 -2.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.5125.1 -1.7 -3.3 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.4844.1 -1.7 -0.8 FIG01210764: hypothetical protein compare
Xcc-8004.1763.1 -1.7 -1.2 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1568.1 -1.7 -1.0 Glycine cleavage system H protein compare
Xcc-8004.618.1 -1.7 -2.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.2920.1 -1.6 -5.6 Ferrous iron transport protein B compare
Xcc-8004.623.1 -1.6 -1.5 Phosphoserine phosphatase compare
Xcc-8004.559.1 -1.6 -1.6 FIG01213048: hypothetical protein compare
Xcc-8004.3346.1 -1.5 -2.9 hypothetical protein compare
Xcc-8004.319.1 -1.5 -6.5 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.1562.1 -1.5 -2.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Xcc-8004.5202.1 -1.5 -3.5 Twin-arginine translocation protein TatC compare
Xcc-8004.2910.1 -1.5 -3.0 Regulatory protein, RpfE type compare
Xcc-8004.1436.1 -1.4 -1.4 Holliday junction DNA helicase RuvA compare
Xcc-8004.4306.1 -1.4 -0.8 hypothetical protein compare
Xcc-8004.3754.1 -1.4 -1.8 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.3040.1 -1.4 -2.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.1334.1 -1.4 -1.1 hypothetical protein compare
Xcc-8004.298.1 -1.4 -2.8 Hypothetical protein YaeJ with similarity to translation release factor compare
Xcc-8004.2571.1 -1.4 -3.5 FIG141694: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.4099.1 -1.4 -2.9 hypothetical protein compare
Xcc-8004.1772.1 -1.3 -1.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.2346.1 -1.3 -1.7 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.2559.1 -1.3 -1.7 hypothetical protein compare
Xcc-8004.1710.1 -1.3 -3.8 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.2337.1 -1.3 -2.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4285.1 -1.3 -5.4 two-component system sensor protein compare
Xcc-8004.1138.1 -1.3 -2.9 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.1228.1 -1.3 -4.1 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.778.1 -1.3 -2.2 FIG01214273: hypothetical protein compare
Xcc-8004.5352.1 -1.3 -2.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.471.1 -1.3 -3.3 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.4313.1 -1.3 -1.7 hypothetical protein compare
Xcc-8004.322.1 -1.3 -2.3 Predicted transcriptional regulator LiuX of leucine degradation pathway, AcrR family compare
Xcc-8004.210.1 -1.3 -4.1 FIG01210591: hypothetical protein compare
Xcc-8004.898.1 -1.3 -1.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3663.1 -1.3 -1.9 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.1243.1 -1.2 -3.8 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.2449.1 -1.2 -2.6 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.4986.1 -1.2 -1.5 FIG01209754: hypothetical protein compare
Xcc-8004.2095.1 -1.2 -3.5 3-oxoacyl-(acyl carrier protein) synthase (EC 2.3.1.41) compare
Xcc-8004.1427.1 -1.2 -2.5 Type I antifreeze protein compare
Xcc-8004.500.1 -1.2 -1.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Xcc-8004.3049.1 -1.2 -4.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.998.1 -1.2 -1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4046.1 -1.2 -4.6 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4640.1 -1.2 -1.0 FIG01210726: hypothetical protein compare
Xcc-8004.1909.1 -1.2 -2.3 FIG01212339: hypothetical protein compare
Xcc-8004.5087.1 -1.2 -1.0 FIG027190: Putative transmembrane protein compare
Xcc-8004.2011.1 -1.2 -1.0 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.659.1 -1.2 -1.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2569.1 -1.1 -1.2 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.318.1 -1.1 -2.9 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.3374.1 -1.1 -1.4 hypothetical protein compare
Xcc-8004.429.1 -1.1 -1.0 hypothetical protein compare
Xcc-8004.5130.1 -1.1 -2.3 hypothetical protein compare
Xcc-8004.1768.1 -1.1 -1.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.4545.1 -1.1 -2.7 Lactoylglutathione lyase (EC 4.4.1.5) compare
Xcc-8004.3740.1 -1.1 -2.0 Type III secretion HpaB protein compare
Xcc-8004.417.1 -1.1 -2.3 hypothetical protein compare
Xcc-8004.4013.1 -1.1 -1.3 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.1400.1 -1.1 -1.2 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.1880.1 -1.1 -4.4 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.5343.1 -1.1 -3.2 hypothetical protein compare
Xcc-8004.4373.1 -1.1 -2.0 LppC putative lipoprotein compare
Xcc-8004.3752.1 -1.1 -1.2 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.1744.1 -1.1 -2.8 hypothetical protein compare
Xcc-8004.3167.1 -1.1 -2.0 biotin synthesis protein compare
Xcc-8004.4976.1 -1.1 -5.0 hypothetical protein compare
Xcc-8004.4069.1 -1.1 -1.9 FIG01211525: hypothetical protein compare
Xcc-8004.2924.1 -1.1 -2.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.1619.1 -1.1 -1.5 PspA/IM30 family protein compare
Xcc-8004.2520.1 -1.1 -2.2 DNA repair protein RadC compare
Xcc-8004.3741.1 -1.1 -1.7 Type III effector HrpW, hairpin with pectate lyase domain compare
Xcc-8004.4824.1 -1.1 -4.0 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.773.1 -1.1 -1.9 Transcriptional regulator marR family compare
Xcc-8004.1133.1 -1.1 -1.1 Rubredoxin compare
Xcc-8004.565.1 -1.0 -2.8 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.5114.1 -1.0 -2.8 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.5253.1 -1.0 -0.8 hypothetical protein compare
Xcc-8004.576.1 -1.0 -1.2 FIG01210281: hypothetical protein compare
Xcc-8004.3222.1 -1.0 -1.2 Mobile element protein compare
Xcc-8004.3310.1 -1.0 -2.2 Chromosome partition protein smc compare
Xcc-8004.1515.1 -1.0 -1.2 hypothetical protein compare
Xcc-8004.4790.1 -1.0 -1.8 N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) compare
Xcc-8004.360.1 -1.0 -1.4 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Xcc-8004.3036.1 -1.0 -1.4 L-Proline/Glycine betaine transporter ProP compare
Xcc-8004.3426.1 -1.0 -2.8 Chaperone protein DnaJ compare
Xcc-8004.4935.1 -1.0 -1.8 FIG01213190: hypothetical protein compare
Xcc-8004.3955.1 -1.0 -2.7 HflK protein compare
Xcc-8004.645.1 -1.0 -0.9 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.1718.1 -1.0 -0.9 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.2936.1 -1.0 -5.5 Amino acid transporters compare
Xcc-8004.3183.1 -1.0 -2.9 RNA polymerase sigma factor RpoE compare
Xcc-8004.4204.1 -1.0 -1.6 FIG01210014: hypothetical protein compare
Xcc-8004.290.1 -1.0 -2.8 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.4672.1 -1.0 -1.4 hypothetical protein compare
Xcc-8004.2935.1 -1.0 -5.8 Amino acid transporters compare
Xcc-8004.3783.1 -1.0 -3.5 Two-component system sensor protein compare
Xcc-8004.494.1 -1.0 -2.7 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.4233.1 -1.0 -0.8 two-component system sensor protein compare
Xcc-8004.1226.1 -1.0 -0.7 FIG01210021: hypothetical protein compare
Xcc-8004.4221.1 -1.0 -2.6 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.3702.1 -1.0 -2.0 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.2911.1 -1.0 -0.7 Transcription elongation factor GreA compare
Xcc-8004.4829.1 -0.9 -1.5 Transamidase GatB domain protein compare
Xcc-8004.5166.1 -0.9 -2.1 hypothetical protein compare
Xcc-8004.4675.1 -0.9 -0.8 FIG01211280: hypothetical protein compare
Xcc-8004.3981.1 -0.9 -2.7 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.321.1 -0.9 -5.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.1007.1 -0.9 -0.9 acetylxylan esterase compare
Xcc-8004.3119.1 -0.9 -2.1 GTP-binding protein HflX compare
Xcc-8004.1567.1 -0.9 -2.0 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.3162.1 -0.9 -1.8 FIG01211092: hypothetical protein compare
Xcc-8004.556.1 -0.9 -1.5 component of multidrug efflux system compare
Xcc-8004.1244.1 -0.9 -3.6 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.2701.1 -0.9 -2.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3794.1 -0.9 -0.8 Mobile element protein compare
Xcc-8004.3211.1 -0.9 -1.3 protein of unknown function DUF88 compare
Xcc-8004.2229.1 -0.9 -3.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.4953.1 -0.9 -3.1 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Xcc-8004.1658.1 -0.9 -3.3 hypothetical protein compare
Xcc-8004.3685.1 -0.9 -1.8 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Xcc-8004.5108.1 -0.9 -2.7 Uncharacterized protein ImpA compare
Xcc-8004.3556.1 -0.9 -1.9 FIG01213161: hypothetical protein compare
Xcc-8004.4231.1 -0.9 -0.7 two-component system regulatory protein compare
Xcc-8004.3281.1 -0.9 -2.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.4503.1 -0.9 -2.2 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.2865.1 -0.9 -1.2 FIG01210234: hypothetical protein compare
Xcc-8004.2168.1 -0.9 -1.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.4339.1 -0.9 -1.5 FIG01211792: hypothetical protein compare
Xcc-8004.3064.1 -0.9 -3.5 Xylose isomerase (EC 5.3.1.5) compare
Xcc-8004.4290.1 -0.9 -1.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Xcc-8004.3803.1 -0.9 -0.5 hypothetical protein compare
Xcc-8004.5203.1 -0.9 -0.9 Twin-arginine translocation protein TatB compare
Xcc-8004.4507.1 -0.9 -2.4 Glycosyltransferase compare
Xcc-8004.1166.1 -0.8 -1.8 FIG01210744: hypothetical protein compare
Xcc-8004.1873.1 -0.8 -1.7 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.1911.1 -0.8 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments