Experiment set7IT088 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2335.1 -3.8 -4.5 Transport ATP-binding protein CydC compare
Xcc-8004.3041.1 -3.6 -4.4 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.1615.1 -3.5 -2.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1858.1 -3.3 -1.4 FIG01211170: hypothetical protein compare
Xcc-8004.623.1 -3.3 -2.3 Phosphoserine phosphatase compare
Xcc-8004.1241.1 -3.3 -5.7 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.2921.1 -3.2 -3.8 ferrous iron transport protein compare
Xcc-8004.2182.1 -2.9 -14.7 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.1651.1 -2.9 -8.1 putative Cytochrome bd2, subunit I compare
Xcc-8004.288.1 -2.8 -1.4 Ferredoxin compare
Xcc-8004.3976.1 -2.6 -3.6 2-methylaconitate cis-trans isomerase compare
Xcc-8004.4620.1 -2.6 -7.8 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1652.1 -2.6 -6.8 putative Cytochrome bd2, subunit II compare
Xcc-8004.3395.1 -2.5 -3.7 Transcriptional regulator, GntR family compare
Xcc-8004.797.1 -2.4 -1.5 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Xcc-8004.2923.1 -2.4 -8.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.1359.1 -2.3 -5.8 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4477.1 -2.3 -2.4 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.4200.1 -2.2 -1.9 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.4810.1 -2.2 -8.4 hypothetical protein compare
Xcc-8004.1372.1 -2.1 -2.0 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4596.1 -2.1 -8.5 hypothetical protein compare
Xcc-8004.3855.1 -2.1 -6.1 FIG01209965: hypothetical protein compare
Xcc-8004.1790.1 -2.0 -2.5 Zinc uptake regulation protein ZUR compare
Xcc-8004.741.1 -2.0 -1.3 hypothetical protein compare
Xcc-8004.130.1 -1.9 -4.5 hypothetical protein compare
Xcc-8004.3979.1 -1.9 -7.7 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.574.1 -1.9 -6.3 Di-/tripeptide transporter compare
Xcc-8004.1027.1 -1.9 -1.9 Two-component system sensor protein compare
Xcc-8004.4529.1 -1.9 -1.5 FIG01210979: hypothetical protein compare
Xcc-8004.951.1 -1.9 -1.8 General secretion pathway protein M compare
Xcc-8004.2922.1 -1.8 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.4844.1 -1.7 -0.9 FIG01210764: hypothetical protein compare
Xcc-8004.5133.1 -1.7 -1.6 FIG01212313: hypothetical protein compare
Xcc-8004.3752.1 -1.7 -1.1 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.4507.1 -1.7 -6.0 Glycosyltransferase compare
Xcc-8004.1809.1 -1.7 -1.2 extracellular serine protease compare
Xcc-8004.3676.1 -1.7 -3.1 Translation elongation factor LepA compare
Xcc-8004.2334.1 -1.7 -3.0 Transport ATP-binding protein CydD compare
Xcc-8004.4884.1 -1.7 -2.0 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.2920.1 -1.6 -6.0 Ferrous iron transport protein B compare
Xcc-8004.269.1 -1.6 -3.2 FIG136845: Rhodanese-related sulfurtransferase compare
Xcc-8004.318.1 -1.6 -4.5 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.127.1 -1.6 -1.8 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4292.1 -1.5 -2.3 Taurine transport ATP-binding protein TauB compare
Xcc-8004.3674.1 -1.5 -2.0 FIG01209931: hypothetical protein compare
Xcc-8004.3230.1 -1.5 -2.5 Phage DNA invertase compare
Xcc-8004.2652.1 -1.5 -2.5 response regulator compare
Xcc-8004.3783.1 -1.5 -6.1 Two-component system sensor protein compare
Xcc-8004.957.1 -1.5 -2.9 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.3576.1 -1.5 -3.5 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.4046.1 -1.5 -6.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1045.1 -1.5 -2.7 hypothetical protein compare
Xcc-8004.5343.1 -1.5 -3.9 hypothetical protein compare
Xcc-8004.2910.1 -1.4 -3.9 Regulatory protein, RpfE type compare
Xcc-8004.1228.1 -1.4 -5.1 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.1961.1 -1.4 -1.4 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.3632.1 -1.4 -2.2 FIG01209689: hypothetical protein compare
Xcc-8004.1226.1 -1.4 -2.2 FIG01210021: hypothetical protein compare
Xcc-8004.1841.1 -1.4 -2.5 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.3054.1 -1.4 -1.2 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1437.1 -1.4 -4.0 Kup system potassium uptake protein compare
Xcc-8004.3375.1 -1.3 -3.1 hypothetical protein compare
Xcc-8004.2343.1 -1.3 -1.8 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.3281.1 -1.3 -3.6 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.3346.1 -1.3 -2.6 hypothetical protein compare
Xcc-8004.1436.1 -1.3 -1.4 Holliday junction DNA helicase RuvA compare
Xcc-8004.3310.1 -1.3 -3.6 Chromosome partition protein smc compare
Xcc-8004.4039.1 -1.3 -1.9 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.3686.1 -1.3 -5.1 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.4538.1 -1.3 -1.6 hypothetical protein compare
Xcc-8004.659.1 -1.3 -2.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2924.1 -1.3 -3.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.1880.1 -1.3 -6.5 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.934.1 -1.3 -1.4 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.1871.1 -1.2 -3.1 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.3049.1 -1.2 -4.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.319.1 -1.2 -6.8 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.4013.1 -1.2 -1.4 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.3212.1 -1.2 -2.2 phage-related integrase compare
Xcc-8004.4633.1 -1.2 -2.0 FIG01210488: hypothetical protein compare
Xcc-8004.4231.1 -1.2 -1.0 two-component system regulatory protein compare
Xcc-8004.4251.1 -1.2 -1.9 hypothetical protein compare
Xcc-8004.471.1 -1.1 -3.3 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.4732.1 -1.1 -1.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.2867.1 -1.1 -0.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1236.1 -1.1 -2.8 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1906.1 -1.1 -1.9 lipoprotein compare
Xcc-8004.878.1 -1.1 -4.1 Sugar kinase compare
Xcc-8004.3165.1 -1.1 -2.0 Glycosyltransferase (EC 2.4.1.-) compare
Xcc-8004.494.1 -1.1 -3.9 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.4290.1 -1.1 -1.8 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Xcc-8004.337.1 -1.1 -1.8 ATPase, AFG1 family compare
Xcc-8004.4945.1 -1.1 -0.8 FIG01210349: hypothetical protein compare
Xcc-8004.1204.1 -1.1 -1.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.1266.1 -1.1 -2.1 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.4024.1 -1.1 -3.8 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.1162.1 -1.1 -1.6 FIG01210644: hypothetical protein compare
Xcc-8004.5253.1 -1.1 -0.9 hypothetical protein compare
Xcc-8004.3536.1 -1.1 -4.0 FIG01210913: hypothetical protein compare
Xcc-8004.4699.1 -1.1 -0.8 Flagellar motor protein compare
Xcc-8004.2229.1 -1.1 -4.9 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.321.1 -1.1 -6.2 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.399.1 -1.1 -1.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.360.1 -1.0 -2.1 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Xcc-8004.772.1 -1.0 -2.3 protease, putative compare
Xcc-8004.1097.1 -1.0 -2.5 FIG01210707: hypothetical protein compare
Xcc-8004.2217.1 -1.0 -2.2 FIG01209779: hypothetical protein compare
Xcc-8004.2011.1 -1.0 -1.0 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.3687.1 -1.0 -2.3 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.1164.1 -1.0 -1.6 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.5021.1 -1.0 -1.3 FIG01211474: hypothetical protein compare
Xcc-8004.2497.1 -1.0 -0.7 Mobile element protein compare
Xcc-8004.3612.1 -1.0 -1.0 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.3498.1 -1.0 -0.7 hypothetical protein compare
Xcc-8004.3595.1 -1.0 -0.9 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.2259.1 -1.0 -2.9 PhbF compare
Xcc-8004.782.1 -1.0 -2.1 hypothetical protein compare
Xcc-8004.4961.1 -1.0 -2.2 Two-component system regulatory protein compare
Xcc-8004.244.1 -0.9 -3.2 FIG01209881: hypothetical protein compare
Xcc-8004.4294.1 -0.9 -2.0 membrane protein, putative compare
Xcc-8004.2346.1 -0.9 -1.3 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.2389.1 -0.9 -1.1 protein of unknown function DUF1244 compare
Xcc-8004.3013.1 -0.9 -1.5 hypothetical protein compare
Xcc-8004.5189.1 -0.9 -1.4 FIG01212821: hypothetical protein compare
Xcc-8004.1839.1 -0.9 -1.2 FIG01210863: hypothetical protein compare
Xcc-8004.3688.1 -0.9 -4.1 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare
Xcc-8004.5368.1 -0.9 -1.6 FIG01210868: hypothetical protein compare
Xcc-8004.2529.1 -0.9 -2.8 FIG01210734: hypothetical protein compare
Xcc-8004.4829.1 -0.9 -2.3 Transamidase GatB domain protein compare
Xcc-8004.3438.1 -0.9 -5.6 Serine peptidase compare
Xcc-8004.4291.1 -0.9 -3.5 Taurine-binding periplasmic protein TauA compare
Xcc-8004.2230.1 -0.9 -2.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.3848.1 -0.9 -2.8 FIG01212003: hypothetical protein compare
Xcc-8004.3846.1 -0.9 -1.7 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Xcc-8004.1515.1 -0.9 -2.2 hypothetical protein compare
Xcc-8004.4568.1 -0.9 -1.2 FIG01210028: hypothetical protein compare
Xcc-8004.1768.1 -0.9 -1.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.3710.1 -0.9 -1.5 hypothetical protein compare
Xcc-8004.3723.1 -0.9 -1.0 hypothetical protein compare
Xcc-8004.4105.1 -0.9 -1.3 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.601.1 -0.9 -2.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4976.1 -0.9 -5.6 hypothetical protein compare
Xcc-8004.2337.1 -0.9 -2.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4168.1 -0.9 -2.3 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.2936.1 -0.9 -5.8 Amino acid transporters compare
Xcc-8004.577.1 -0.9 -2.4 Transcriptional regulator, MarR family compare
Xcc-8004.1710.1 -0.8 -2.8 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.1955.1 -0.8 -2.6 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1082.1 -0.8 -1.2 FIG01211203: hypothetical protein compare
Xcc-8004.4954.1 -0.8 -3.8 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.5335.1 -0.8 -1.3 FIG01214241: hypothetical protein compare
Xcc-8004.5098.1 -0.8 -1.2 hypothetical protein compare
Xcc-8004.983.1 -0.8 -1.9 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.2945.1 -0.8 -1.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.4510.1 -0.8 -0.7 ATP binding component of ABC-transporter compare
Xcc-8004.4514.1 -0.8 -5.6 Glycosyltransferase compare
Xcc-8004.4604.1 -0.8 -3.0 hypothetical protein compare
Xcc-8004.1694.1 -0.8 -5.1 Ferrichrome-iron receptor compare
Xcc-8004.965.1 -0.8 -2.7 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Xcc-8004.1596.1 -0.8 -3.4 hypothetical protein compare
Xcc-8004.936.1 -0.8 -1.0 FIG01209778: hypothetical protein compare
Xcc-8004.3514.1 -0.8 -3.3 FIG01211598: hypothetical protein compare
Xcc-8004.1062.1 -0.8 -3.2 chemotaxis protein compare
Xcc-8004.3690.1 -0.8 -4.1 Transcriptional regulator, XRE family protein compare
Xcc-8004.3040.1 -0.8 -1.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.1873.1 -0.8 -1.5 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.1361.1 -0.8 -0.9 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.111.1 -0.8 -1.0 FIG01211861: hypothetical protein compare
Xcc-8004.171.1 -0.8 -0.7 hypothetical protein compare
Xcc-8004.5252.1 -0.8 -2.7 FIG01210658: hypothetical protein compare
Xcc-8004.1658.1 -0.8 -3.3 hypothetical protein compare
Xcc-8004.3958.1 -0.8 -0.8 Low molecular weight heat shock protein compare
Xcc-8004.4285.1 -0.8 -2.7 two-component system sensor protein compare
Xcc-8004.1810.1 -0.8 -2.4 FIG01210140: hypothetical protein compare
Xcc-8004.108.1 -0.8 -1.9 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Xcc-8004.2520.1 -0.8 -1.4 DNA repair protein RadC compare
Xcc-8004.3321.1 -0.8 -1.2 FIG01209847: hypothetical protein compare
Xcc-8004.1622.1 -0.8 -2.1 Membrane protein with DUF350 domain compare
Xcc-8004.4239.1 -0.8 -2.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.364.1 -0.8 -1.8 hypothetical protein compare
Xcc-8004.787.1 -0.8 -0.6 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.1601.1 -0.8 -3.0 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.4371.1 -0.8 -2.6 rRNA small subunit methyltransferase I compare
Xcc-8004.235.1 -0.7 -1.4 ComA operon protein 2 compare
Xcc-8004.3759.1 -0.7 -1.7 hypothetical protein compare
Xcc-8004.4250.1 -0.7 -1.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.1434.1 -0.7 -1.0 FIG000859: hypothetical protein YebC compare
Xcc-8004.3698.1 -0.7 -0.9 hypothetical protein compare
Xcc-8004.1897.1 -0.7 -2.0 Acyl-CoA thioester hydrolase compare
Xcc-8004.4503.1 -0.7 -2.3 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.4956.1 -0.7 -1.8 Cytochrome B561 compare
Xcc-8004.1243.1 -0.7 -2.0 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.4824.1 -0.7 -3.3 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3451.1 -0.7 -1.2 hypothetical protein compare
Xcc-8004.570.1 -0.7 -4.8 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) compare
Xcc-8004.2610.1 -0.7 -2.4 FIG01211014: hypothetical protein compare
Xcc-8004.2574.1 -0.7 -1.3 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.3211.1 -0.7 -1.2 protein of unknown function DUF88 compare
Xcc-8004.2449.1 -0.7 -2.1 Glucokinase (EC 2.7.1.2) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments