Experiment set7IT087 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_4027 -4.7 -2.1 hypothetical protein compare
Pf1N1B4_3993 -4.2 -2.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_3636 -3.2 -1.1 FIG00953562: hypothetical protein compare
Pf1N1B4_5029 -2.5 -3.3 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_3272 -2.4 -2.5 hypothetical protein compare
Pf1N1B4_5107 -2.4 -2.8 Putative collagenase compare
Pf1N1B4_1958 -2.3 -1.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4569 -2.2 -3.0 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_15 -2.2 -1.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2453 -2.2 -2.5 hypothetical protein compare
Pf1N1B4_4476 -2.1 -3.9 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_5243 -2.1 -2.5 hypothetical protein compare
Pf1N1B4_3849 -2.1 -2.8 Transcriptional regulator, GntR family compare
Pf1N1B4_12 -2.1 -3.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_4145 -2.0 -1.5 hypothetical protein compare
Pf1N1B4_448 -2.0 -1.4 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_4833 -2.0 -3.7 DNA-binding response regulator, LuxR family compare
Pf1N1B4_5030 -2.0 -3.1 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_1408 -1.9 -3.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_4318 -1.9 -1.3 hypothetical protein compare
Pf1N1B4_4317 -1.9 -0.8 DNA/RNA non-specific endonuclease compare
Pf1N1B4_284 -1.9 -7.6 Universal stress protein family compare
Pf1N1B4_3976 -1.9 -6.1 Transmembrane regulator protein PrtR compare
Pf1N1B4_2545 -1.9 -9.0 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_5745 -1.8 -2.4 FIG139928: Putative protease compare
Pf1N1B4_3656 -1.8 -1.8 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_4474 -1.8 -2.2 transcription regulator protein compare
Pf1N1B4_4505 -1.8 -2.9 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_3149 -1.8 -3.4 hypothetical protein compare
Pf1N1B4_2880 -1.7 -8.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_977 -1.7 -1.2 Molybdenum cofactor biosynthesis protein MoaC compare
Pf1N1B4_5904 -1.7 -2.2 FIG00955320: hypothetical protein compare
Pf1N1B4_5265 -1.7 -2.3 hypothetical protein compare
Pf1N1B4_6 -1.7 -1.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_3907 -1.7 -2.9 FIG00953287: hypothetical protein compare
Pf1N1B4_1627 -1.6 -3.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1626 -1.6 -3.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5357 -1.6 -1.8 hypothetical protein compare
Pf1N1B4_4343 -1.6 -2.5 hypothetical protein compare
Pf1N1B4_5756 -1.6 -3.3 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf1N1B4_901 -1.6 -0.8 hypothetical protein compare
Pf1N1B4_106 -1.6 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1725 -1.6 -7.2 Sulfate transport system permease protein CysW compare
Pf1N1B4_3984 -1.6 -2.4 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) compare
Pf1N1B4_5095 -1.6 -2.2 hypothetical protein compare
Pf1N1B4_22 -1.6 -3.9 Transcriptional regulator, TetR family compare
Pf1N1B4_5652 -1.5 -2.1 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_1534 -1.5 -9.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1113 -1.5 -4.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_4957 -1.5 -0.7 Transcriptional regulator, TetR family compare
Pf1N1B4_3485 -1.5 -3.1 hypothetical protein compare
Pf1N1B4_3918 -1.5 -3.5 Thiamin biosynthesis lipoprotein ApbE compare
Pf1N1B4_1067 -1.5 -2.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_4582 -1.5 -1.3 hypothetical protein compare
Pf1N1B4_4900 -1.5 -1.8 Alkaline proteinase inhibitor precursor compare
Pf1N1B4_2339 -1.5 -0.7 COG1872 compare
Pf1N1B4_2176 -1.5 -2.0 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_345 -1.5 -1.0 Integration host factor beta subunit compare
Pf1N1B4_4678 -1.4 -1.0 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_2411 -1.4 -0.8 FIG00953568: hypothetical protein compare
Pf1N1B4_5461 -1.4 -2.7 hypothetical protein compare
Pf1N1B4_3868 -1.4 -2.7 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_5136 -1.4 -4.8 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_5292 -1.4 -1.5 hypothetical protein compare
Pf1N1B4_2651 -1.4 -1.9 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_2338 -1.4 -4.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_4715 -1.4 -1.8 Transcriptional regulator compare
Pf1N1B4_3795 -1.4 -2.4 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_4299 -1.4 -1.6 sensor histidine kinase compare
Pf1N1B4_3372 -1.4 -1.7 FIG00962464: hypothetical protein compare
Pf1N1B4_2547 -1.4 -2.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1328 -1.4 -1.4 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_5386 -1.4 -1.6 hypothetical protein compare
Pf1N1B4_5542 -1.3 -1.1 hypothetical protein compare
Pf1N1B4_2085 -1.3 -1.9 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_5137 -1.3 -4.7 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf1N1B4_2958 -1.3 -1.2 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_3936 -1.3 -1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_4024 -1.3 -1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4055 -1.3 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_5740 -1.3 -3.3 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
Pf1N1B4_4950 -1.3 -2.0 formate dehydrogenase formation protein FdhE compare
Pf1N1B4_847 -1.3 -5.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2682 -1.3 -1.7 Antiholin-like protein LrgA compare
Pf1N1B4_4446 -1.3 -1.1 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_3038 -1.3 -3.8 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_2163 -1.3 -0.9 hypothetical protein compare
Pf1N1B4_2036 -1.3 -1.7 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_1726 -1.3 -3.7 Sulfate transport system permease protein CysT compare
Pf1N1B4_3483 -1.3 -3.2 Transcriptional regulatory protein PhoP compare
Pf1N1B4_3625 -1.3 -2.2 Flagellar synthesis regulator FleN compare
Pf1N1B4_1294 -1.3 -0.7 VgrG protein compare
Pf1N1B4_3098 -1.3 -2.4 Ribonuclease HII (EC 3.1.26.4) compare
Pf1N1B4_673 -1.3 -1.2 MoxR-like ATPases compare
Pf1N1B4_2621 -1.3 -1.9 PspA/IM30 family protein compare
Pf1N1B4_153 -1.2 -3.6 Glucoamylase (EC 3.2.1.3) compare
Pf1N1B4_2280 -1.2 -5.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_104 -1.2 -2.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_4414 -1.2 -1.6 Bll6261 protein compare
Pf1N1B4_2792 -1.2 -2.2 FIG00953454: hypothetical protein compare
Pf1N1B4_4834 -1.2 -5.1 Sensor histidine kinase compare
Pf1N1B4_2102 -1.2 -1.9 hypothetical protein compare
Pf1N1B4_51 -1.2 -2.3 hypothetical protein compare
Pf1N1B4_3830 -1.2 -1.5 CrfX protein compare
Pf1N1B4_1535 -1.2 -3.0 hypothetical protein compare
Pf1N1B4_3831 -1.2 -3.0 CmpX compare
Pf1N1B4_1624 -1.2 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_3627 -1.2 -1.4 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_34 -1.2 -0.6 Xanthine permease compare
Pf1N1B4_2936 -1.2 -6.9 Putative sulfate permease compare
Pf1N1B4_115 -1.2 -0.7 Membrane protein mosC compare
Pf1N1B4_3141 -1.2 -1.5 FIG00959768: hypothetical protein compare
Pf1N1B4_2549 -1.2 -4.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2683 -1.2 -4.2 LrgA-associated membrane protein LrgB compare
Pf1N1B4_4835 -1.2 -0.5 Carbon starvation protein A compare
Pf1N1B4_4019 -1.2 -2.0 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family compare
Pf1N1B4_5105 -1.2 -1.1 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_2733 -1.2 -2.1 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_1227 -1.2 -2.0 FIG00954870: hypothetical protein compare
Pf1N1B4_5666 -1.2 -0.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_4063 -1.2 -2.5 CrcB protein compare
Pf1N1B4_4602 -1.1 -1.4 Transcriptional regulators, LysR family compare
Pf1N1B4_1704 -1.1 -0.8 hypothetical protein compare
Pf1N1B4_5851 -1.1 -2.5 Transcriptional regulator, RpiR family compare
Pf1N1B4_1262 -1.1 -2.9 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_2054 -1.1 -2.7 FIG00964469: hypothetical protein compare
Pf1N1B4_2948 -1.1 -1.8 FIG00954698: hypothetical protein compare
Pf1N1B4_5112 -1.1 -1.7 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_3091 -1.1 -2.5 Membrane-associated zinc metalloprotease compare
Pf1N1B4_236 -1.1 -2.3 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_606 -1.1 -2.1 Iron siderophore sensor protein compare
Pf1N1B4_5729 -1.1 -4.8 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_69 -1.1 -0.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_2536 -1.1 -4.9 Probable two-component sensor, near polyamine transporter compare
Pf1N1B4_5962 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_3709 -1.1 -1.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_1533 -1.1 -4.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_4668 -1.1 -3.2 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_5063 -1.1 -2.1 Phosphoribosyl transferase domain protein compare
Pf1N1B4_2112 -1.1 -6.5 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_3719 -1.1 -1.3 Glutathione peroxidase family protein compare
Pf1N1B4_372 -1.1 -3.1 UDP-galactose-lipid carrier transferase (EC 2.-.-.-) compare
Pf1N1B4_2643 -1.1 -0.6 Predicted zinc-binding protein compare
Pf1N1B4_2145 -1.1 -1.0 Translation initiation inhibitor compare
Pf1N1B4_3468 -1.1 -0.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_1749 -1.1 -2.2 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_3331 -1.1 -0.7 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_3130 -1.1 -1.2 Bacteriophage protein GP46 compare
Pf1N1B4_2750 -1.1 -2.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_778 -1.1 -4.3 hypothetical protein compare
Pf1N1B4_5824 -1.1 -0.7 Na(+) H(+) antiporter subunit D compare
Pf1N1B4_5611 -1.1 -1.8 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_952 -1.0 -1.8 Cell division protein MraZ compare
Pf1N1B4_996 -1.0 -2.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_3538 -1.0 -0.6 Transcriptional regulator, AraC family compare
Pf1N1B4_3685 -1.0 -2.3 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_1637 -1.0 -0.8 FIG00954739: hypothetical protein compare
Pf1N1B4_3284 -1.0 -3.2 Antitoxin 1 compare
Pf1N1B4_1504 -1.0 -0.5 Acyl carrier protein compare
Pf1N1B4_384 -1.0 -0.6 proteinase inhibitor compare
Pf1N1B4_2303 -1.0 -4.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_3585 -1.0 -2.5 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Pf1N1B4_733 -1.0 -0.5 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_5734 -1.0 -2.9 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_1724 -1.0 -2.1 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_3206 -1.0 -2.7 Short chain dehydrogenase compare
Pf1N1B4_5437 -1.0 -3.4 hypothetical protein compare
Pf1N1B4_2184 -1.0 -3.5 Autolysis response regulater LytR compare
Pf1N1B4_2739 -1.0 -2.3 acetyltransferase, GNAT family compare
Pf1N1B4_2224 -1.0 -0.7 FIG00953390: hypothetical protein compare
Pf1N1B4_2894 -1.0 -1.4 FIG00956317: hypothetical protein compare
Pf1N1B4_3793 -1.0 -0.7 COG2010: Cytochrome c, mono- and diheme variants compare
Pf1N1B4_2695 -1.0 -1.7 Rare lipoprotein A precursor compare
Pf1N1B4_981 -1.0 -2.7 UPF0246 protein YaaA compare
Pf1N1B4_4433 -1.0 -2.0 FIG035246: DoxX family protein compare
Pf1N1B4_4345 -1.0 -2.7 hypothetical protein compare
Pf1N1B4_742 -1.0 -3.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_4078 -1.0 -2.3 GDP-mannose pyrophosphatase YffH compare
Pf1N1B4_201 -1.0 -1.7 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_2271 -1.0 -2.2 ATPases of the AAA+ class compare
Pf1N1B4_5312 -1.0 -2.7 Putative activity regulator of membrane protease YbbK compare
Pf1N1B4_4614 -1.0 -3.0 Membrane alanine aminopeptidase N (EC 3.4.11.2) compare
Pf1N1B4_1159 -1.0 -0.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_525 -1.0 -1.4 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_2442 -1.0 -3.0 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_1691 -1.0 -0.5 hypothetical protein compare
Pf1N1B4_196 -1.0 -2.4 FIG137594: Putative iron-regulated membrane protein compare
Pf1N1B4_681 -1.0 -2.1 FOG: GGDEF domain compare
Pf1N1B4_4585 -1.0 -1.4 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_4571 -1.0 -0.6 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_5779 -0.9 -0.6 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_777 -0.9 -4.5 Membrane protein glpM compare
Pf1N1B4_3351 -0.9 -2.4 FIG00954302: hypothetical protein compare
Pf1N1B4_5275 -0.9 -3.5 hypothetical protein compare
Pf1N1B4_5782 -0.9 -2.9 Nitrous oxide reductase maturation protein NosR compare
Pf1N1B4_263 -0.9 -2.1 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf1N1B4_603 -0.9 -2.8 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_1351 -0.9 -1.3 Tabtoxin resistance protein compare
Pf1N1B4_2337 -0.9 -2.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_702 -0.9 -3.0 Transcriptional regulator PobR, AraC family compare


Specific Phenotypes

For 1 genes in this experiment

For anaerobic Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For anaerobic Sodium pyruvate across organisms