Experiment set7IT087 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.3722.1 -5.3 -1.3 HrpB7 protein compare
Xcc-8004.3898.1 -4.8 -1.1 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.4945.1 -4.5 -1.1 FIG01210349: hypothetical protein compare
Xcc-8004.1651.1 -4.5 -8.9 putative Cytochrome bd2, subunit I compare
Xcc-8004.1365.1 -3.9 -1.3 FIG01211058: hypothetical protein compare
Xcc-8004.791.1 -3.9 -3.9 FIG01211375: hypothetical protein compare
Xcc-8004.3395.1 -3.6 -3.3 Transcriptional regulator, GntR family compare
Xcc-8004.4039.1 -3.4 -3.3 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.2334.1 -3.3 -7.8 Transport ATP-binding protein CydD compare
Xcc-8004.623.1 -3.2 -1.8 Phosphoserine phosphatase compare
Xcc-8004.1652.1 -3.2 -6.1 putative Cytochrome bd2, subunit II compare
Xcc-8004.2182.1 -3.2 -15.0 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2335.1 -3.2 -5.9 Transport ATP-binding protein CydC compare
Xcc-8004.1236.1 -3.1 -6.6 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.4697.1 -3.0 -2.5 FIG01210654: hypothetical protein compare
Xcc-8004.3346.1 -3.0 -2.1 hypothetical protein compare
Xcc-8004.3976.1 -3.0 -4.9 2-methylaconitate cis-trans isomerase compare
Xcc-8004.4529.1 -3.0 -1.3 FIG01210979: hypothetical protein compare
Xcc-8004.3726.1 -2.9 -2.0 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.2922.1 -2.8 -1.7 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.951.1 -2.8 -1.5 General secretion pathway protein M compare
Xcc-8004.2920.1 -2.7 -9.4 Ferrous iron transport protein B compare
Xcc-8004.288.1 -2.7 -1.1 Ferredoxin compare
Xcc-8004.3041.1 -2.7 -2.9 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.4620.1 -2.7 -8.7 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3703.1 -2.7 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1241.1 -2.6 -4.3 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.127.1 -2.6 -1.6 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.3686.1 -2.5 -6.1 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.3794.1 -2.5 -1.3 Mobile element protein compare
Xcc-8004.1359.1 -2.5 -6.3 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.2923.1 -2.5 -8.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.4078.1 -2.4 -2.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.500.1 -2.4 -1.6 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Xcc-8004.2644.1 -2.4 -1.9 hypothetical protein compare
Xcc-8004.3733.1 -2.4 -1.8 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Xcc-8004.3979.1 -2.4 -6.9 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.2337.1 -2.4 -4.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.1372.1 -2.3 -1.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.2529.1 -2.2 -3.7 FIG01210734: hypothetical protein compare
Xcc-8004.3576.1 -2.2 -6.8 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.1132.1 -2.2 -1.1 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.5202.1 -2.1 -3.7 Twin-arginine translocation protein TatC compare
Xcc-8004.574.1 -2.1 -6.0 Di-/tripeptide transporter compare
Xcc-8004.2259.1 -2.1 -5.4 PhbF compare
Xcc-8004.1873.1 -2.1 -2.1 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.1790.1 -2.1 -2.0 Zinc uptake regulation protein ZUR compare
Xcc-8004.3752.1 -2.0 -1.7 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.1728.1 -2.0 -2.7 FIG01210339: hypothetical protein compare
Xcc-8004.2961.1 -1.9 -2.2 PROBABLE HEMAGGLUTININ-RELATED PROTEIN compare
Xcc-8004.3211.1 -1.9 -2.0 protein of unknown function DUF88 compare
Xcc-8004.2652.1 -1.9 -1.8 response regulator compare
Xcc-8004.2921.1 -1.9 -2.0 ferrous iron transport protein compare
Xcc-8004.5302.1 -1.9 -2.7 FIG039767: hypothetical protein compare
Xcc-8004.3326.1 -1.9 -2.7 FIG01212390: hypothetical protein compare
Xcc-8004.4921.1 -1.8 -1.4 FIG01213962: hypothetical protein compare
Xcc-8004.4844.1 -1.8 -0.7 FIG01210764: hypothetical protein compare
Xcc-8004.944.1 -1.8 -1.8 General secretion pathway protein F compare
Xcc-8004.4046.1 -1.8 -7.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4596.1 -1.7 -5.0 hypothetical protein compare
Xcc-8004.5343.1 -1.7 -4.7 hypothetical protein compare
Xcc-8004.1621.1 -1.7 -4.7 FIG01213569: hypothetical protein compare
Xcc-8004.2230.1 -1.7 -3.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.2892.1 -1.7 -2.2 FIG01210619: hypothetical protein compare
Xcc-8004.130.1 -1.7 -4.9 hypothetical protein compare
Xcc-8004.3451.1 -1.7 -1.1 hypothetical protein compare
Xcc-8004.3222.1 -1.7 -1.4 Mobile element protein compare
Xcc-8004.3715.1 -1.6 -1.9 FIG01212258: hypothetical protein compare
Xcc-8004.2495.1 -1.6 -1.9 hypothetical protein compare
Xcc-8004.3710.1 -1.6 -1.2 hypothetical protein compare
Xcc-8004.1510.1 -1.6 -3.5 Ribosomal-protein-S5p-alanine acetyltransferase compare
Xcc-8004.1880.1 -1.6 -4.9 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.3754.1 -1.6 -1.0 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.797.1 -1.6 -1.0 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Xcc-8004.143.1 -1.6 -2.9 hypothetical protein compare
Xcc-8004.689.1 -1.6 -1.3 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.361.1 -1.6 -1.9 FIG023937: hypothetical protein in ureide degradation cluster compare
Xcc-8004.3647.1 -1.6 -3.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.1622.1 -1.6 -2.2 Membrane protein with DUF350 domain compare
Xcc-8004.4339.1 -1.5 -2.3 FIG01211792: hypothetical protein compare
Xcc-8004.2110.1 -1.5 -1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1113.1 -1.5 -1.9 hypothetical protein compare
Xcc-8004.2358.1 -1.5 -4.9 Segregation and condensation protein A compare
Xcc-8004.3201.1 -1.5 -1.3 hypothetical protein compare
Xcc-8004.3731.1 -1.5 -1.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.3939.1 -1.5 -1.8 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
Xcc-8004.80.1 -1.5 -2.1 hypothetical protein compare
Xcc-8004.1811.1 -1.5 -1.4 extracellular serine protease compare
Xcc-8004.2497.1 -1.5 -0.7 Mobile element protein compare
Xcc-8004.4168.1 -1.5 -3.3 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.924.1 -1.5 -1.1 FIG01200701: possible membrane protein compare
Xcc-8004.1710.1 -1.5 -3.9 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.4322.1 -1.5 -0.9 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.2563.1 -1.5 -1.4 FIG01210540: hypothetical protein compare
Xcc-8004.3783.1 -1.5 -3.5 Two-component system sensor protein compare
Xcc-8004.2924.1 -1.4 -2.8 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.3968.1 -1.4 -2.2 Mobile element protein compare
Xcc-8004.722.1 -1.4 -2.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.318.1 -1.4 -2.8 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.957.1 -1.4 -2.0 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.3612.1 -1.4 -1.0 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.3698.1 -1.4 -1.2 hypothetical protein compare
Xcc-8004.3049.1 -1.3 -4.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3955.1 -1.3 -3.5 HflK protein compare
Xcc-8004.2228.1 -1.3 -2.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.4227.1 -1.3 -2.4 ThiJ/PfpI family protein compare
Xcc-8004.353.1 -1.3 -1.2 FIG01210121: hypothetical protein compare
Xcc-8004.1436.1 -1.3 -1.2 Holliday junction DNA helicase RuvA compare
Xcc-8004.171.1 -1.3 -0.8 hypothetical protein compare
Xcc-8004.1727.1 -1.3 -1.1 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.4948.1 -1.3 -1.7 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.1162.1 -1.3 -1.3 FIG01210644: hypothetical protein compare
Xcc-8004.3699.1 -1.3 -2.4 hypothetical protein compare
Xcc-8004.1416.1 -1.3 -1.6 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Xcc-8004.3313.1 -1.2 -1.9 LSU ribosomal protein L9p compare
Xcc-8004.375.1 -1.2 -0.9 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
Xcc-8004.4285.1 -1.2 -4.5 two-component system sensor protein compare
Xcc-8004.3676.1 -1.2 -1.8 Translation elongation factor LepA compare
Xcc-8004.821.1 -1.2 -3.9 Sulfate permease compare
Xcc-8004.4635.1 -1.2 -0.9 hypothetical protein compare
Xcc-8004.726.1 -1.2 -0.6 Putative preQ0 transporter compare
Xcc-8004.1660.1 -1.2 -0.6 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.1720.1 -1.2 -1.3 UPF0301 protein YqgE compare
Xcc-8004.601.1 -1.2 -2.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4038.1 -1.2 -2.1 hypothetical protein compare
Xcc-8004.1085.1 -1.2 -1.4 FIG01212308: hypothetical protein compare
Xcc-8004.950.1 -1.2 -0.7 General secretion pathway protein L compare
Xcc-8004.3120.1 -1.2 -1.3 RNA-binding protein Hfq compare
Xcc-8004.3310.1 -1.2 -3.0 Chromosome partition protein smc compare
Xcc-8004.3054.1 -1.2 -0.8 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.319.1 -1.2 -4.5 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.403.1 -1.2 -2.2 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) compare
Xcc-8004.1361.1 -1.2 -0.7 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.999.1 -1.2 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2910.1 -1.2 -2.3 Regulatory protein, RpfE type compare
Xcc-8004.1465.1 -1.1 -2.6 Transporter, LysE family compare
Xcc-8004.585.1 -1.1 -0.7 Na(+) H(+) antiporter subunit F compare
Xcc-8004.1244.1 -1.1 -3.8 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.321.1 -1.1 -6.0 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.3846.1 -1.1 -2.3 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Xcc-8004.2958.1 -1.1 -0.8 tryptophan-rich sensory protein compare
Xcc-8004.589.1 -1.1 -1.4 hypothetical protein compare
Xcc-8004.1336.1 -1.1 -3.6 two-component system sensor protein compare
Xcc-8004.5367.1 -1.1 -3.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.3212.1 -1.1 -1.5 phage-related integrase compare
Xcc-8004.3687.1 -1.1 -2.6 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.1164.1 -1.1 -1.7 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.2357.1 -1.1 -1.6 Segregation and condensation protein B compare
Xcc-8004.4204.1 -1.1 -1.1 FIG01210014: hypothetical protein compare
Xcc-8004.494.1 -1.1 -3.3 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.2343.1 -1.1 -1.2 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.4568.1 -1.1 -1.0 FIG01210028: hypothetical protein compare
Xcc-8004.3688.1 -1.1 -3.7 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare
Xcc-8004.2389.1 -1.1 -1.0 protein of unknown function DUF1244 compare
Xcc-8004.2199.1 -1.1 -0.9 Hemerythrin-like protein PA1673 compare
Xcc-8004.1409.1 -1.1 -1.4 Cation:proton antiporter compare
Xcc-8004.401.1 -1.1 -1.4 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.5369.1 -1.1 -2.6 Lipoprotein compare
Xcc-8004.4275.1 -1.0 -3.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.3330.1 -1.0 -2.4 FIG01212834: hypothetical protein compare
Xcc-8004.2956.1 -1.0 -0.9 Homoserine kinase (EC 2.7.1.39) compare
Xcc-8004.1466.1 -1.0 -1.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.2713.1 -1.0 -0.7 Nitrate/nitrite transporter compare
Xcc-8004.1014.1 -1.0 -2.1 FIG01210031: hypothetical protein compare
Xcc-8004.3728.1 -1.0 -1.1 hypothetical protein compare
Xcc-8004.1680.1 -1.0 -3.4 FIG006611: nucleotidyltransferase compare
Xcc-8004.4561.1 -1.0 -1.7 Sensor histidine kinase compare
Xcc-8004.3812.1 -1.0 -1.9 DNA repair protein RadA compare
Xcc-8004.1818.1 -1.0 -2.0 FIG00554193: hypothetical protein compare
Xcc-8004.3753.1 -1.0 -1.8 putative secreted protein compare
Xcc-8004.1434.1 -1.0 -1.0 FIG000859: hypothetical protein YebC compare
Xcc-8004.1228.1 -1.0 -2.8 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.3854.1 -1.0 -2.9 COG2363 compare
Xcc-8004.666.1 -1.0 -2.1 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase-related protein compare
Xcc-8004.1696.1 -1.0 -0.8 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.4499.1 -1.0 -1.1 Mobile element protein compare
Xcc-8004.565.1 -1.0 -2.5 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.602.1 -1.0 -1.2 DnaJ related chaperone compare
Xcc-8004.1058.1 -1.0 -1.5 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.1264.1 -1.0 -2.5 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.2175.1 -1.0 -1.7 1-phosphofructokinase (EC 2.7.1.56) compare
Xcc-8004.3980.1 -1.0 -2.6 2-methylcitrate synthase (EC 2.3.3.5) compare
Xcc-8004.3723.1 -1.0 -0.9 hypothetical protein compare
Xcc-8004.3108.1 -1.0 -1.6 Regulatory protein RecX compare
Xcc-8004.571.1 -1.0 -4.1 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Xcc-8004.4694.1 -1.0 -0.9 FIG01210824: hypothetical protein compare
Xcc-8004.2270.1 -1.0 -1.6 Glutathione S-transferase (EC 2.5.1.18) compare
Xcc-8004.3775.1 -1.0 -1.5 FIG001154: CcsA-related protein compare
Xcc-8004.4329.1 -1.0 -0.9 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.412.1 -0.9 -2.0 Putative protein-S-isoprenylcysteine methyltransferase compare
Xcc-8004.4578.1 -0.9 -2.4 FIG048548: ATP synthase protein I2 compare
Xcc-8004.2169.1 -0.9 -1.0 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.1294.1 -0.9 -2.1 hypothetical protein compare
Xcc-8004.48.1 -0.9 -1.4 FIG01212903: hypothetical protein compare
Xcc-8004.3459.1 -0.9 -1.2 FIG01212836: hypothetical protein compare
Xcc-8004.3040.1 -0.9 -1.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.3321.1 -0.9 -1.0 FIG01209847: hypothetical protein compare
Xcc-8004.1295.1 -0.9 -1.7 Transcriptional regulator, LysR family compare
Xcc-8004.2654.1 -0.9 -2.3 FIG026426: Hypothetical protein compare
Xcc-8004.1784.1 -0.9 -2.2 FIG01210539: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments