Experiment set7IT087 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

200 most detrimental genes:

  gene name fitness t score description  
Xcc-8004.3861.1 +3.1 9.9 FIG01210504: hypothetical protein compare
Xcc-8004.4668.1 +3.0 18.4 FIG01210168: hypothetical protein compare
Xcc-8004.2427.1 +2.9 22.6 Two-component system sensor protein compare
Xcc-8004.1133.1 +2.9 1.6 Rubredoxin compare
Xcc-8004.1662.1 +2.6 13.7 RNA polymerase sigma-54 factor RpoN compare
Xcc-8004.2177.1 +2.4 12.8 Transcriptional regulator lacI family compare
Xcc-8004.4286.1 +2.2 7.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.4669.1 +2.2 11.7 Transcriptional regulator NtrC family compare
Xcc-8004.1931.1 +2.0 2.2 FIG01209787: hypothetical protein compare
Xcc-8004.165.1 +1.9 2.4 hypothetical protein compare
Xcc-8004.4665.1 +1.9 3.7 FIG01211765: hypothetical protein compare
Xcc-8004.4254.1 +1.8 1.6 Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) compare
Xcc-8004.3862.1 +1.8 5.4 Septum site-determining protein MinC compare
Xcc-8004.94.1 +1.7 1.3 Transcriptional regulator, LuxR family compare
Xcc-8004.2861.1 +1.7 3.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.545.1 +1.7 2.2 Nucleoside-diphosphate-sugar epimerases compare
Xcc-8004.4427.1 +1.6 3.3 General secretion pathway protein J compare
Xcc-8004.2832.1 +1.6 5.5 RNA polymerase sigma factor for flagellar operon compare
Xcc-8004.3788.1 +1.6 2.2 Protein of unknown function DUF1428 compare
Xcc-8004.3297.1 +1.5 6.6 N-formylglutamate deformylase (EC 3.5.1.68) compare
Xcc-8004.1685.1 +1.5 2.2 hypothetical protein compare
Xcc-8004.3796.1 +1.5 3.1 Putative SigmaB asociated two-component system sensor protein compare
Xcc-8004.1978.1 +1.5 2.3 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4481.1 +1.5 6.0 hypothetical protein compare
Xcc-8004.4432.1 +1.5 6.0 General secretion pathway protein E compare
Xcc-8004.2387.1 +1.5 3.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.787.1 +1.5 1.7 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.738.1 +1.4 1.9 Malonate decarboxylase gamma subunit compare
Xcc-8004.4296.1 +1.4 2.7 Hemin transport protein compare
Xcc-8004.3642.1 +1.3 1.6 FIG01211227: hypothetical protein compare
Xcc-8004.3739.1 +1.3 2.2 Type III secretion protein HrpE compare
Xcc-8004.2659.1 +1.3 2.1 FIG01212223: hypothetical protein compare
Xcc-8004.2799.1 +1.3 6.3 response regulator compare
Xcc-8004.3498.1 +1.3 1.2 hypothetical protein compare
Xcc-8004.3942.1 +1.3 1.1 RelE/StbE replicon stabilization toxin compare
Xcc-8004.3863.1 +1.3 3.5 Septum site-determining protein MinD compare
Xcc-8004.854.1 +1.2 2.0 Cytosine deaminase (EC 3.5.4.1) compare
Xcc-8004.4423.1 +1.2 2.4 General secretion pathway protein N compare
Xcc-8004.4181.1 +1.2 1.4 Molybdenum cofactor biosynthesis protein MoaB compare
Xcc-8004.4424.1 +1.2 5.1 General secretion pathway protein M compare
Xcc-8004.4420.1 +1.2 9.1 General secretion pathway protein D compare
Xcc-8004.4428.1 +1.2 2.0 General secretion pathway protein I compare
Xcc-8004.2627.1 +1.2 1.1 Phi-Lf prophage-derived helix-destabilizing protein compare
Xcc-8004.3296.1 +1.2 2.8 Histidine ammonia-lyase (EC 4.3.1.3) compare
Xcc-8004.1001.1 +1.2 1.8 FIG01213217: hypothetical protein compare
Xcc-8004.4264.1 +1.2 1.2 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.5268.1 +1.2 2.0 Mobile element protein compare
Xcc-8004.4752.1 +1.2 1.4 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.4884.1 +1.1 1.5 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.1362.1 +1.1 3.6 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.727.1 +1.1 2.9 FIG01210864: hypothetical protein compare
Xcc-8004.1597.1 +1.1 2.2 hypothetical protein compare
Xcc-8004.5328.1 +1.1 2.1 Mobile element protein compare
Xcc-8004.195.1 +1.1 1.3 phosphoesterase, putative compare
Xcc-8004.1007.1 +1.1 1.7 acetylxylan esterase compare
Xcc-8004.1290.1 +1.1 2.8 hypothetical protein compare
Xcc-8004.4283.1 +1.1 1.3 Diacylglycerol kinase (EC 2.7.1.107) compare
Xcc-8004.4556.1 +1.1 2.2 Lipoprotein releasing system ATP-binding protein LolD compare
Xcc-8004.2881.1 +1.1 3.1 FIG01210399: hypothetical protein compare
Xcc-8004.1069.1 +1.1 4.4 Transcriptional regulator compare
Xcc-8004.4327.1 +1.1 1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1644.1 +1.1 2.9 hypothetical protein compare
Xcc-8004.934.1 +1.1 1.9 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.3295.1 +1.1 5.4 Imidazolonepropionase (EC 3.5.2.7) compare
Xcc-8004.111.1 +1.0 1.2 FIG01211861: hypothetical protein compare
Xcc-8004.1414.1 +1.0 1.2 Lactoylglutathione lyase and related lyases compare
Xcc-8004.5167.1 +1.0 2.6 L-fuconate dehydratase (EC 4.2.1.68) compare
Xcc-8004.4425.1 +1.0 3.4 General secretion pathway protein L compare
Xcc-8004.932.1 +1.0 3.5 histidine kinase/response regulator hybrid protein compare
Xcc-8004.5303.1 +1.0 2.5 FIG149030: hypothetical protein compare
Xcc-8004.3402.1 +1.0 2.8 FIG01210246: hypothetical protein compare
Xcc-8004.1222.1 +1.0 1.6 Glyoxalase family protein compare
Xcc-8004.1515.1 +1.0 0.9 hypothetical protein compare
Xcc-8004.4935.1 +1.0 2.6 FIG01213190: hypothetical protein compare
Xcc-8004.5122.1 +1.0 1.0 hypothetical protein compare
Xcc-8004.2700.1 +1.0 5.6 hypothetical protein compare
Xcc-8004.3244.1 +1.0 1.5 DNA repair protein RadC compare
Xcc-8004.1308.1 +1.0 2.6 FIG01211990: hypothetical protein compare
Xcc-8004.5019.1 +1.0 1.1 FIG01210147: hypothetical protein compare
Xcc-8004.1394.1 +1.0 1.5 Cobyrinic acid A,C-diamide synthase compare
Xcc-8004.703.1 +1.0 1.1 hypothetical protein compare
Xcc-8004.5021.1 +0.9 1.2 FIG01211474: hypothetical protein compare
Xcc-8004.4253.1 +0.9 0.8 Transcriptional regulator, LysR family compare
Xcc-8004.5205.1 +0.9 2.4 FIG01210461: hypothetical protein compare
Xcc-8004.2869.1 +0.9 1.5 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1566.1 +0.9 1.7 Putative activity regulator of membrane protease YbbK compare
Xcc-8004.963.1 +0.9 1.4 hypothetical protein compare
Xcc-8004.1504.1 +0.9 1.4 type IV pili signal transduction protein PilI compare
Xcc-8004.3721.1 +0.9 1.3 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.3322.1 +0.9 0.9 FIG01211446: hypothetical protein compare
Xcc-8004.4442.1 +0.9 2.1 FIG01212138: hypothetical protein compare
Xcc-8004.4292.1 +0.9 0.7 Taurine transport ATP-binding protein TauB compare
Xcc-8004.212.1 +0.9 2.3 Transcriptional regulator, AsnC family compare
Xcc-8004.2081.1 +0.9 2.1 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.3882.1 +0.9 1.2 hypothetical protein compare
Xcc-8004.3685.1 +0.9 1.7 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Xcc-8004.1933.1 +0.9 0.7 FIG01209679: hypothetical protein compare
Xcc-8004.4817.1 +0.9 2.0 L-alanine-DL-glutamate epimerase compare
Xcc-8004.936.1 +0.9 1.1 FIG01209778: hypothetical protein compare
Xcc-8004.751.1 +0.9 3.0 FIG01210776: hypothetical protein compare
Xcc-8004.197.1 +0.9 2.9 rhamnogalacturonan acetylesterase compare
Xcc-8004.1900.1 +0.9 1.6 Acyl-CoA thioester hydrolase compare
Xcc-8004.27.1 +0.9 1.4 hypothetical protein compare
Xcc-8004.4847.1 +0.9 2.9 FIG01209735: hypothetical protein compare
Xcc-8004.4698.1 +0.8 2.0 Methyl-accepting chemotaxis protein compare
Xcc-8004.3798.1 +0.8 1.7 Anti-sigma B factor RsbT compare
Xcc-8004.3652.1 +0.8 1.3 FIG01211136: hypothetical protein compare
Xcc-8004.1204.1 +0.8 1.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.2533.1 +0.8 1.3 Candidate type III effector Hop protein compare
Xcc-8004.1071.1 +0.8 5.8 hypothetical protein compare
Xcc-8004.3958.1 +0.8 1.6 Low molecular weight heat shock protein compare
Xcc-8004.4291.1 +0.8 2.5 Taurine-binding periplasmic protein TauA compare
Xcc-8004.3389.1 +0.8 2.5 Nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.1521.1 +0.8 1.3 FIG01209895: hypothetical protein compare
Xcc-8004.1064.1 +0.8 1.2 hypothetical protein compare
Xcc-8004.2768.1 +0.8 3.9 hypothetical protein compare
Xcc-8004.207.1 +0.8 2.6 hypothetical protein compare
Xcc-8004.776.1 +0.8 2.2 Fatty acid desaturase compare
Xcc-8004.4426.1 +0.8 4.5 General secretion pathway protein K compare
Xcc-8004.1068.1 +0.8 4.4 Transcriptional activator cadC compare
Xcc-8004.4233.1 +0.8 0.9 two-component system sensor protein compare
Xcc-8004.2011.1 +0.8 0.8 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4290.1 +0.8 1.3 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Xcc-8004.1715.1 +0.8 2.5 Transporter compare
Xcc-8004.2831.1 +0.8 3.1 Flagellar synthesis regulator FleN compare
Xcc-8004.3013.1 +0.8 1.3 hypothetical protein compare
Xcc-8004.495.1 +0.8 2.3 EpiH/GdmH-related protein compare
Xcc-8004.2724.1 +0.8 2.8 FIG01212801: hypothetical protein compare
Xcc-8004.4715.1 +0.8 1.2 FIG00353010: hypothetical protein compare
Xcc-8004.4558.1 +0.8 1.2 ABC transporter permease compare
Xcc-8004.2699.1 +0.8 4.3 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.3549.1 +0.8 1.9 FIG01211514: hypothetical protein compare
Xcc-8004.2309.1 +0.8 2.1 FIG01214780: hypothetical protein compare
Xcc-8004.1110.1 +0.7 3.6 DedA protein compare
Xcc-8004.2151.1 +0.7 1.2 FIG01212686: hypothetical protein compare
Xcc-8004.5334.1 +0.7 1.4 hypothetical protein compare
Xcc-8004.263.1 +0.7 2.0 Distant homolog of E. coli HemX protein in Xanthomonadaceae compare
Xcc-8004.876.1 +0.7 0.7 Mobile element protein compare
Xcc-8004.1616.1 +0.7 0.5 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.5131.1 +0.7 2.0 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Xcc-8004.3170.1 +0.7 2.1 FIG01210267: hypothetical protein compare
Xcc-8004.4431.1 +0.7 3.0 General secretion pathway protein F compare
Xcc-8004.3832.1 +0.7 1.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.3750.1 +0.7 1.2 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.1858.1 +0.7 0.6 FIG01211170: hypothetical protein compare
Xcc-8004.5222.1 +0.7 0.8 hypothetical protein compare
Xcc-8004.2691.1 +0.7 1.1 hypothetical protein compare
Xcc-8004.543.1 +0.7 1.6 FIG01210004: hypothetical protein compare
Xcc-8004.4098.1 +0.7 1.8 FIG01211222: hypothetical protein compare
Xcc-8004.778.1 +0.7 1.8 FIG01214273: hypothetical protein compare
Xcc-8004.3479.1 +0.7 0.4 aklaviketone reductase compare
Xcc-8004.4429.1 +0.7 1.3 General secretion pathway protein H compare
Xcc-8004.486.1 +0.7 1.6 Lipase compare
Xcc-8004.1959.1 +0.7 1.0 hypothetical protein compare
Xcc-8004.1000.1 +0.7 1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4854.1 +0.7 1.9 FIG01213399: hypothetical protein compare
Xcc-8004.1003.1 +0.7 0.6 FIG027190: Putative transmembrane protein compare
Xcc-8004.1904.1 +0.7 0.9 two-component system regulatory protein compare
Xcc-8004.3361.1 +0.7 2.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Xcc-8004.4929.1 +0.7 1.4 hypothetical protein compare
Xcc-8004.5071.1 +0.7 1.3 FIG01210955: hypothetical protein compare
Xcc-8004.4510.1 +0.7 0.9 ATP binding component of ABC-transporter compare
Xcc-8004.3834.1 +0.7 1.7 Pathogenicity-related protein compare
Xcc-8004.4610.1 +0.7 1.6 hypothetical protein compare
Xcc-8004.1112.1 +0.7 1.4 Short chain dehydrogenase compare
Xcc-8004.4210.1 +0.7 1.9 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.1485.1 +0.7 2.4 Coenzyme PQQ synthesis protein E compare
Xcc-8004.419.1 +0.7 1.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3471.1 +0.7 1.2 FIG01211539: hypothetical protein compare
Xcc-8004.2191.1 +0.7 2.8 Plasmid replication/partition related protein compare
Xcc-8004.323.1 +0.7 1.3 FIG01210738: hypothetical protein compare
Xcc-8004.744.1 +0.6 2.7 Predicted regulator PutR for proline utilization, GntR family compare
Xcc-8004.402.1 +0.6 1.7 FIG01209770: hypothetical protein compare
Xcc-8004.3527.1 +0.6 1.7 Transcriptional regulator, MarR family compare
Xcc-8004.2618.1 +0.6 0.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Xcc-8004.4384.1 +0.6 1.2 hypothetical protein compare
Xcc-8004.3785.1 +0.6 2.0 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Xcc-8004.2772.1 +0.6 3.2 Histidine kinase compare
Xcc-8004.3875.1 +0.6 0.4 FIG01212144: hypothetical protein compare
Xcc-8004.5224.1 +0.6 0.4 bleomycin resistance protein compare
Xcc-8004.3860.1 +0.6 3.2 two-component system sensor protein compare
Xcc-8004.3807.1 +0.6 1.5 hypothetical protein compare
Xcc-8004.1395.1 +0.6 1.0 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Xcc-8004.3786.1 +0.6 0.8 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.3784.1 +0.6 1.9 Signal transduction histidine kinase compare
Xcc-8004.4228.1 +0.6 1.3 hypothetical protein compare
Xcc-8004.3845.1 +0.6 2.2 Mobile element protein compare
Xcc-8004.4652.1 +0.6 1.4 FIG01210787: hypothetical protein compare
Xcc-8004.837.1 +0.6 1.1 FIG01210690: hypothetical protein compare
Xcc-8004.2327.1 +0.6 1.7 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Xcc-8004.164.1 +0.6 2.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.590.1 +0.6 1.4 FIG01210288: hypothetical protein compare
Xcc-8004.277.1 +0.6 1.9 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Xcc-8004.1526.1 +0.6 3.2 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) compare
Xcc-8004.2428.1 +0.6 1.6 Two-component system regulatory protein compare
Xcc-8004.1747.1 +0.6 1.6 FIG01210249: hypothetical protein compare
Xcc-8004.1454.1 +0.6 1.7 hypothetical protein compare
Xcc-8004.393.1 +0.6 1.8 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Xcc-8004.2933.1 +0.6 1.2 Adenosylhomocysteinase (EC 3.3.1.1) compare
Xcc-8004.1223.1 +0.6 0.7 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments