Experiment set7IT087 for Rhodospirillum rubrum S1H

Compare to:

SMN_rich_noKan

200 most important genes:

  gene name fitness t score description  
Rru_A2772 -3.6 -4.2 ATP phosphoribosyltransferase (NCBI) compare
Rru_A1620 -3.2 -4.2 hypothetical protein (NCBI) compare
Rru_A2771 -2.4 -5.4 Histidinol dehydrogenase (NCBI) compare
Rru_A1239 -2.2 -4.4 Glutamate 5-kinase, ProB-related (NCBI) compare
Rru_A3594 -2.2 -5.0 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A1105 -2.1 -7.1 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A0058 -2.1 -2.9 Dihydrokaempferol 4-reductase (NCBI) compare
Rru_A3264 -2.0 -8.4 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A3748 -1.8 -5.6 hypothetical protein (NCBI) compare
Rru_A1841 -1.8 -2.0 Flavin reductase-like, FMN-binding (NCBI) compare
Rru_A1435 -1.7 -5.0 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) compare
Rru_A1827 -1.7 -6.7 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A2869 -1.6 -1.5 Exopolysaccharide synthesis, ExoD (NCBI) compare
Rru_A0574 -1.5 -3.6 Carboxylyase-related protein (NCBI) compare
Rru_A1767 -1.4 -2.5 peptidase M23B (NCBI) compare
Rru_A0670 -1.3 -2.6 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A2609 -1.3 -1.6 hypothetical protein (NCBI) compare
Rru_A0596 -1.3 -2.8 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype (NCBI) compare
Rru_A3533 -1.3 -9.2 hypothetical protein (NCBI) compare
Rru_A2100 -1.3 -8.0 Protein of unknown function DUF81 (NCBI) compare
Rru_A2497 -1.3 -6.5 Peptide chain release factor 3 (NCBI) compare
Rru_A0484 -1.3 -3.8 hypothetical protein (NCBI) compare
Rru_A2987 -1.3 -4.7 hypothetical protein (NCBI) compare
Rru_A0155 -1.2 -2.6 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A3801 -1.2 -2.6 Enoyl-CoA hydratase/isomerase (NCBI) compare
Rru_A2163 -1.2 -1.8 conserved hypothetical protein RP631 (NCBI) compare
Rru_A2574 -1.2 -1.9 Transcriptional Regulator, BadM/Rrf2 family (NCBI) compare
Rru_A0668 -1.2 -2.6 Cobalamin-5-phosphate synthase CobS (NCBI) compare
Rru_A0010 -1.2 -3.7 Sigma-54 (RpoN) (NCBI) compare
Rru_A1437 -1.1 -4.8 Sodium:dicarboxylate symporter (NCBI) compare
Rru_A3642 -1.1 -2.9 Negative regulator of class I heat shock protein (NCBI) compare
Rru_A0412 -1.1 -1.7 hypothetical protein (NCBI) compare
Rru_A3190 -1.1 -1.9 Aspartate carbamoyltransferase (NCBI) compare
Rru_A0150 -1.1 -1.8 hypothetical protein (NCBI) compare
Rru_A3165 -1.1 -3.6 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_A0206 -1.1 -2.5 Cobalt chelatase, pCobS small subunit (NCBI) compare
Rru_A3341 -1.1 -2.1 Acetylglutamate kinase (NCBI) compare
Rru_A1527 -1.0 -4.2 ABC transporter component (NCBI) compare
Rru_A2992 -1.0 -2.3 Precorrin-6Y C5,15-methyltransferase (decarboxylating) (NCBI) compare
Rru_A0399 -1.0 -3.0 Phosphoesterase, PA-phosphatase related (NCBI) compare
Rru_A3547 -1.0 -4.1 hypothetical protein (NCBI) compare
Rru_A3202 -1.0 -4.3 DNA topoisomerase (NCBI) compare
Rru_A2008 -1.0 -6.3 Thiamine biosynthesis protein ThiC (NCBI) compare
Rru_A2167 -1.0 -3.0 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A3766 -0.9 -5.2 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A2478 -0.9 -5.2 ArgK protein (NCBI) compare
Rru_A0073 -0.9 -4.3 ribosomal subunit interface protein, putative (NCBI) compare
Rru_A2512 -0.9 -3.7 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI) compare
Rru_A2986 -0.9 -4.3 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A3773 -0.9 -2.5 CBS domain protein (NCBI) compare
Rru_A0671 -0.9 -4.8 cobalamin synthesis CobW protein (NCBI) compare
Rru_A2038 -0.9 -5.6 Glutamate-ammonia-ligase adenylyltransferase (NCBI) compare
Rru_A0118 -0.9 -1.6 type II secretion system protein E (NCBI) compare
Rru_A2887 -0.9 -2.3 GreA/GreB family elongation factor (NCBI) compare
Rru_A3329 -0.9 -2.3 hypothetical protein (NCBI) compare
Rru_A2847 -0.9 -2.0 Transcriptional regulators, TraR/DksA family (NCBI) compare
Rru_A1111 -0.8 -5.9 Pseudouridine synthase, RluD (NCBI) compare
Rru_A3010 -0.8 -3.8 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A0712 -0.8 -1.0 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A1019 -0.8 -2.7 FAD dependent oxidoreductase (NCBI) compare
Rru_A3626 -0.8 -1.6 Glucose inhibited division protein (NCBI) compare
Rru_A3783 -0.8 -6.0 tRNA pseudouridine synthase B (NCBI) compare
Rru_A1775 -0.8 -1.5 chromosome segregation and condensation protein ScpA (NCBI) compare
Rru_A2988 -0.8 -2.7 Precorrin-6X reductase (NCBI) compare
Rru_A1536 -0.8 -3.3 UvrD/REP helicase (NCBI) compare
Rru_A0006 -0.8 -2.5 Plasmid maintenance system antidote protein (NCBI) compare
Rru_A1890 -0.8 -3.1 hypothetical protein (NCBI) compare
Rru_A1675 -0.8 -6.1 Cytochrome c assembly protein (NCBI) compare
Rru_A2480 -0.8 -1.4 Methylmalonyl-CoA mutase (NCBI) compare
Rru_A0148 -0.8 -3.2 GTP-binding protein TypA (NCBI) compare
Rru_A0207 -0.8 -2.9 Cobalt chelatase, CobT subunit (NCBI) compare
Rru_A1206 -0.8 -1.1 hypothetical protein (NCBI) compare
Rru_A3054 -0.7 -1.5 Ribonuclease H (NCBI) compare
Rru_A1179 -0.7 -1.4 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A2989 -0.7 -3.2 Precorrin-3B C17-methyltransferase region (NCBI) compare
Rru_A1517 -0.7 -2.3 transposase of ISBst12-like element (NCBI) compare
Rru_A3322 -0.7 -3.1 Transcriptional Regulator, Crp/Fnr family (NCBI) compare
Rru_A1454 -0.7 -1.4 Phage Tail Collar (NCBI) compare
Rru_A0159 -0.7 -2.3 Exodeoxyribonuclease VII (NCBI) compare
Rru_A1768 -0.7 -2.1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (NCBI) compare
Rru_A2510 -0.7 -1.0 hypothetical protein (NCBI) compare
Rru_A2990 -0.7 -4.4 precorrin-2 C20-methyltransferase (NCBI) compare
Rru_A1648 -0.7 -1.5 Helix-turn-helix protein, CopG (NCBI) compare
Rru_A0922 -0.7 -1.6 Protein of unknown function DUF1044 (NCBI) compare
Rru_A3393 -0.7 -3.4 Penicillin-binding protein 1A (NCBI) compare
Rru_A3273 -0.7 -2.1 Protein of unknown function DUF1470 (NCBI) compare
Rru_A2760 -0.7 -0.2 hypothetical protein (NCBI) compare
Rru_A2983 -0.7 -1.7 Polyprenyl synthetase (NCBI) compare
Rru_A0637 -0.7 -1.3 hypothetical protein (NCBI) compare
Rru_A1051 -0.7 -1.2 Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI) compare
Rru_A1309 -0.7 -3.8 acetoacetyl-CoA reductase (NCBI) compare
Rru_A1085 -0.7 -1.9 Metallophosphoesterase (NCBI) compare
Rru_A2244 -0.7 -5.6 Glycogen/starch/alpha-glucan phosphorylase (NCBI) compare
Rru_A1319 -0.7 -1.9 Triphosphoribosyl-dephospho-CoA synthase (NCBI) compare
Rru_A0661 -0.7 -2.5 Hly-III related proteins (NCBI) compare
Rru_A1047 -0.7 -4.4 6-phosphofructokinase (NCBI) compare
Rru_A3704 -0.7 -1.9 Periplasmic solute binding protein (NCBI) compare
Rru_A0404 -0.6 -5.2 Amidophosphoribosyl transferase (NCBI) compare
Rru_A3782 -0.6 -2.8 Ribosome-binding factor A (NCBI) compare
Rru_A0846 -0.6 -1.7 hypothetical protein (NCBI) compare
Rru_A1208 -0.6 -3.0 AFG1-like ATPase (NCBI) compare
Rru_A3359 -0.6 -4.0 Cobyrinic acid a,c-diamide synthase CbiA (NCBI) compare
Rru_A1854 -0.6 -3.0 Pyridoxal phosphate biosynthetic protein PdxJ (NCBI) compare
Rru_A2115 -0.6 -4.0 Phosphoglucomutase/phosphomannomutase (NCBI) compare
Rru_A0432 -0.6 -2.4 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) compare
Rru_A3366 -0.6 -4.5 Cobaltochelatase, CobN subunit (NCBI) compare
Rru_A1884 -0.6 -1.5 Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI) compare
Rru_A2085 -0.6 -1.7 Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) compare
Rru_A1136 -0.6 -4.2 Periplasmic binding protein (NCBI) compare
Rru_A3502 -0.6 -0.6 hypothetical protein (NCBI) compare
Rru_A3539 -0.6 -3.3 GlnB (protein PII) uridylyltransferase, GlnD (NCBI) compare
Rru_A0394 -0.6 -1.4 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A0329 -0.6 -2.3 hypothetical protein (NCBI) compare
Rru_A1607 -0.6 -4.3 4-alpha-glucanotransferase (NCBI) compare
Rru_A1074 -0.6 -1.0 MotA/TolQ/ExbB proton channel family protein (NCBI) compare
Rru_A1235 -0.6 -1.9 Protein of unknown function DUF163 (NCBI) compare
Rru_A3627 -0.6 -2.3 Cobyrinic acid a,c-diamide synthase (NCBI) compare
Rru_A2281 -0.6 -2.2 NifQ (NCBI) compare
Rru_A1549 -0.6 -2.5 Trigger factor (NCBI) compare
Rru_A3382 -0.6 -2.5 Cobalamin biosynthesis protein CbiB (NCBI) compare
Rru_A2566 -0.6 -1.3 hypothetical protein (NCBI) compare
Rru_A0225 -0.5 -2.2 Metal dependent phosphohydrolase, HD region (NCBI) compare
Rru_A1138 -0.5 -2.9 ABC transporter component (NCBI) compare
Rru_A2182 -0.5 -2.9 NAD(P)(+) transhydrogenase (AB-specific) (NCBI) compare
Rru_A3275 -0.5 -1.9 Hsp33 protein (NCBI) compare
Rru_A1837 -0.5 -2.2 Porphobilinogen synthase (NCBI) compare
Rru_A1137 -0.5 -4.6 transport system permease protein (NCBI) compare
Rru_A2029 -0.5 -1.5 Serine O-acetyltransferase (NCBI) compare
Rru_A3384 -0.5 -2.0 Precorrin-4 C11-methyltransferase region (NCBI) compare
Rru_A3254 -0.5 -1.8 ABC transporter component (NCBI) compare
Rru_A2888 -0.5 -1.9 hypothetical protein (NCBI) compare
Rru_A1086 -0.5 -1.9 hypothetical protein (RefSeq) compare
Rru_A2224 -0.5 -1.0 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A1552 -0.5 -0.9 Peptidase S16, ATP-dependent protease La (NCBI) compare
Rru_A2632 -0.5 -1.2 Peptidoglycan-binding domain 1 (NCBI) compare
Rru_A0770 -0.5 -4.2 Peptidase M23B (NCBI) compare
Rru_A0052 -0.5 -4.2 Biotin carboxylase (NCBI) compare
Rru_A0615 -0.5 -1.7 photosynthetic complex assembly protein (NCBI) compare
Rru_A2709 -0.5 -2.1 Thioesterase superfamily (NCBI) compare
Rru_A0100 -0.5 -0.8 hypothetical protein (NCBI) compare
Rru_A0064 -0.5 -1.1 squalene-phytoene synthase (NCBI) compare
Rru_A2893 -0.5 -1.5 ABC-3 transporter component (NCBI) compare
Rru_A3240 -0.5 -1.2 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A2479 -0.5 -3.3 Methylmalonyl-CoA mutase-like (NCBI) compare
Rru_A0406 -0.5 -2.3 DNA repair protein RadA (NCBI) compare
Rru_A2109 -0.5 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) compare
Rru_A2246 -0.5 -4.2 Glucose-1-phosphate adenylyltransferase (NCBI) compare
Rru_A2514 -0.5 -2.5 Twin-arginine translocation pathway signal (NCBI) compare
Rru_A2287 -0.5 -2.8 Protein of unknown function DUF86 (NCBI) compare
Rru_B0050 -0.5 -0.9 dTDP-glucose 4,6-dehydratase (NCBI) compare
Rru_A0788 -0.5 -1.7 ABC transporter component (NCBI) compare
Rru_A2140 -0.5 -1.8 Transcriptional Regulator, XRE family (NCBI) compare
Rru_A3139 -0.5 -2.6 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A0562 -0.5 -0.8 Peptidase S1 and S6, chymotrypsin/Hap (NCBI) compare
Rru_A0521 -0.5 -3.1 CheA Signal Transduction Histidine Kinases (STHK) (NCBI) compare
Rru_A2440 -0.5 -2.3 NADH:ubiquinone oxidoreductase 17.2 kD subunit (NCBI) compare
Rru_A2994 -0.5 -1.3 hypothetical protein (NCBI) compare
Rru_A1525 -0.5 -1.4 Nucleoside diphosphate pyrophosphatase (NCBI) compare
Rru_A2166 -0.4 -2.5 hypothetical protein (NCBI) compare
Rru_A2562 -0.4 -2.2 CheW protein (NCBI) compare
Rru_A2857 -0.4 -2.8 Flagellar FlbT (NCBI) compare
Rru_A1167 -0.4 -1.0 putative hydrogenase expression/formation protein HupK (NCBI) compare
Rru_A1218 -0.4 -1.4 phage shock protein A, PspA (NCBI) compare
Rru_B0025 -0.4 -2.2 hypothetical protein (NCBI) compare
Rru_A3255 -0.4 -1.3 Protein of unknown function DUF214 (NCBI) compare
Rru_A1571 -0.4 -2.0 metallo-beta-lactamase (NCBI) compare
Rru_A3770 -0.4 -2.6 tRNA-i(6)A37 modification enzyme MiaB (NCBI) compare
Rru_A1015 -0.4 -2.1 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A1611 -0.4 -1.4 Cobalamin synthesis protein/P47K (NCBI) compare
Rru_A1839 -0.4 -1.9 TRAP-type C4-dicarboxylate transport system periplasmic component-like (NCBI) compare
Rru_A2216 -0.4 -1.4 Protein of unknown function DUF1127 (NCBI) compare
Rru_A1190 -0.4 -0.9 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A0496 -0.4 -1.6 Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI) compare
Rru_A2401 -0.4 -1.9 RuBisCO transcriptional regulator cbbR, LysR family (NCBI) compare
Rru_A1641 -0.4 -2.3 cation antiporter (NCBI) compare
Rru_A3739 -0.4 -1.4 hypothetical protein (NCBI) compare
Rru_A3285 -0.4 -1.4 Response regulator receiver domain protein (CheY) (NCBI) compare
Rru_A1393 -0.4 -1.0 Nitrogenase (NCBI) compare
Rru_A0096 -0.4 -1.5 Secretion protein HlyD (NCBI) compare
Rru_A3089 -0.4 -2.1 hypothetical protein (NCBI) compare
Rru_A1366 -0.4 -3.3 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A1191 -0.4 -2.8 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A2018 -0.4 -0.6 hypothetical protein (NCBI) compare
Rru_A3167 -0.4 -2.1 Binding-protein-dependent transport systems inner membrane component (NCBI) compare
Rru_A2517 -0.4 -2.6 AMP-dependent synthetase and ligase (NCBI) compare
Rru_A0746 -0.4 -1.5 hypothetical protein (NCBI) compare
Rru_A3268 -0.4 -1.4 hypothetical protein (NCBI) compare
Rru_A0021 -0.4 -1.1 Transcriptional Regulator, MarR family (NCBI) compare
Rru_A1635 -0.4 -3.2 NADH dehydrogenase (quinone) (NCBI) compare
Rru_A0319 -0.4 -2.6 NADH-ubiquinone oxidoreductase, chain 4L (NCBI) compare
Rru_A2907 -0.4 -0.7 Anti-Sigma-factor antagonist (STAS) domain protein (NCBI) compare
Rru_A1614 -0.4 -2.2 hypothetical protein (NCBI) compare
Rru_A1973 -0.4 -2.4 Transcriptional Regulator, LacI family (NCBI) compare
Rru_A1642 -0.4 -2.1 putative sulfonate/nitrate transport system substrate-binding protein (NCBI) compare
Rru_A0700 -0.4 -0.5 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI) compare
Rru_A1308 -0.4 -3.1 Acyl-CoA dehydrogenase (NCBI) compare
Rru_A3169 -0.4 -1.9 ABC transporter component (NCBI) compare
Rru_A1953 -0.4 -1.9 hypothetical protein (NCBI) compare
Rru_A3677 -0.4 -1.8 Tripartite ATP-independent periplasmic transporter, DctQ component (NCBI) compare
Rru_A1865 -0.4 -2.2 Dihydrodipicolinate synthase subfamily (NCBI) compare


Specific Phenotypes

None in this experiment

For Rhodospirillum rubrum S1H in smn_rich experiments