Experiment set7IT087 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_00655 -6.8 -6.6 glycosyltransferase family 4 protein compare
IAI47_13685 -6.7 -4.6 Tol-Pal system protein TolB compare
IAI47_15635 -5.7 -4.0 RNA polymerase-binding protein DksA compare
IAI47_13700 -5.3 -5.2 Tol-Pal system protein TolQ compare
IAI47_17000 -5.1 -11.0 lipoprotein NlpI compare
IAI47_10845 -4.9 -3.4 major outer membrane lipoprotein compare
IAI47_08705 -4.4 -3.1 carboxy terminal-processing peptidase compare
IAI47_12275 -4.4 -19.9 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_08085 -4.2 -5.0 helix-turn-helix domain-containing protein compare
IAI47_09040 -4.0 -2.5 NAD-dependent epimerase compare
IAI47_18480 -4.0 -15.6 lipid III flippase WzxE compare
IAI47_12280 -3.8 -15.0 glucan biosynthesis protein G compare
IAI47_08700 -3.8 -7.2 RNA chaperone ProQ compare
IAI47_05070 -3.6 -1.3 outer membrane protein assembly factor BamB compare
IAI47_00780 -3.3 -4.5 6-phosphofructokinase compare
IAI47_09235 -3.3 -2.6 type I DNA topoisomerase compare
IAI47_09580 -3.2 -4.9 FNR family transcription factor compare
IAI47_12865 -3.1 -11.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_17155 -3.0 -14.5 calcium/sodium antiporter compare
IAI47_13695 -2.9 -1.0 colicin uptake protein TolR compare
IAI47_13725 -2.8 -8.2 cytochrome ubiquinol oxidase subunit I compare
IAI47_08450 -2.8 -3.3 Holliday junction branch migration DNA helicase RuvB compare
IAI47_12925 -2.7 -5.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_05420 -2.7 -1.9 PTS glucose transporter subunit IIA compare
IAI47_18830 -2.5 -2.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_21600 -2.5 -3.5 EamA family transporter compare
IAI47_15970 -2.5 -2.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_03725 -2.5 -9.5 phosphoglycerate dehydrogenase compare
IAI47_17005 -2.4 -7.0 polyribonucleotide nucleotidyltransferase compare
IAI47_19945 -2.4 -1.2 hypothetical protein compare
IAI47_18470 -2.4 -12.9 ECA oligosaccharide polymerase compare
IAI47_13415 -2.3 -13.4 L,D-transpeptidase family protein compare
IAI47_16350 -2.3 -9.6 phosphoserine phosphatase compare
IAI47_05090 -2.3 -4.3 hypothetical protein compare
IAI47_00760 -2.3 -6.0 envelope stress response regulator transcription factor CpxR compare
IAI47_04120 -2.1 -14.1 GTP diphosphokinase compare
IAI47_17020 -2.1 -4.2 30S ribosome-binding factor RbfA compare
IAI47_17965 -2.1 -11.9 glucose-6-phosphate isomerase compare
IAI47_12470 -2.0 -12.2 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_11310 -2.0 -3.7 redox-regulated ATPase YchF compare
IAI47_17235 -1.9 -10.8 stringent starvation protein A compare
IAI47_05155 -1.9 -13.5 polyphosphate kinase 1 compare
IAI47_13690 -1.9 -0.6 cell envelope integrity protein TolA compare
IAI47_21595 -1.9 -9.5 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_12930 -1.8 -4.0 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_00465 -1.8 -3.2 ribosome-dependent GTPase TypA compare
IAI47_11415 -1.8 -2.2 hypothetical protein compare
IAI47_08355 -1.8 -3.8 flagellar protein FlhE compare
IAI47_13720 -1.7 -3.5 cytochrome d ubiquinol oxidase subunit II compare
IAI47_04800 -1.7 -1.2 RnfH family protein compare
IAI47_03820 -1.7 -4.0 site-specific tyrosine recombinase XerD compare
IAI47_02400 -1.7 -1.6 YhdT family protein compare
IAI47_00770 -1.7 -1.2 general stress protein compare
IAI47_11480 -1.7 -2.2 hypothetical protein compare
IAI47_12885 -1.7 -7.4 pyruvate formate lyase 1-activating protein compare
IAI47_18055 -1.7 -5.0 DNA-binding protein HU-alpha compare
IAI47_01475 -1.7 -8.4 MurR/RpiR family transcriptional regulator compare
IAI47_04110 -1.6 -13.2 two-component sensor histidine kinase BarA compare
IAI47_15485 -1.6 -1.1 molecular chaperone Skp compare
IAI47_10520 -1.6 -2.8 pyridoxamine 5'-phosphate oxidase compare
IAI47_16420 -1.6 -12.4 LacI family DNA-binding transcriptional regulator compare
IAI47_13625 -1.6 -7.7 CDF family zinc transporter ZitB compare
IAI47_18415 -1.6 -5.3 lipoprotein compare
IAI47_03375 -1.6 -8.7 peptide chain release factor 3 compare
IAI47_16520 -1.6 -9.4 hypothetical protein compare
IAI47_03550 -1.6 -8.4 membrane-bound lytic murein transglycosylase MltC compare
IAI47_01000 -1.6 -11.4 HTH-type transcriptional regulator HdfR compare
IAI47_12305 -1.6 -7.2 hypothetical protein compare
IAI47_07030 -1.5 -6.3 HAD family hydrolase compare
IAI47_09055 -1.5 -9.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_07020 -1.5 -1.2 hypothetical protein compare
IAI47_17185 -1.5 -6.8 RNA polymerase factor sigma-54 compare
IAI47_18530 -1.4 -2.8 thioredoxin TrxA compare
IAI47_15540 -1.4 -8.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_17560 -1.4 -1.5 ROK family transcriptional regulator compare
IAI47_01005 -1.4 -8.2 DUF413 domain-containing protein compare
IAI47_11450 -1.4 -4.3 ankyrin repeat domain-containing protein compare
IAI47_07025 -1.4 -4.3 glycosyltransferase family 4 protein compare
IAI47_04300 -1.4 -6.1 recombinase RecA compare
IAI47_11830 -1.4 -6.0 muramoyltetrapeptide carboxypeptidase compare
IAI47_14200 -1.3 -3.0 hypothetical protein compare
IAI47_14955 -1.3 -2.9 phosphate starvation-inducible protein compare
IAI47_00940 -1.3 -6.4 HTH-type transcriptional repressor FabR compare
IAI47_12565 -1.3 -8.9 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_05195 -1.3 -2.2 DnaA inactivator Hda compare
IAI47_10320 -1.3 -0.6 Rrf2 family transcriptional regulator compare
IAI47_20595 -1.3 -3.3 GhoT/OrtT family toxin compare
IAI47_18520 -1.2 -9.5 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_07180 -1.2 -5.3 DUF496 family protein compare
IAI47_00500 -1.2 -7.5 ATP-dependent DNA helicase RecG compare
IAI47_18705 -1.2 -7.9 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_08440 -1.2 -1.4 crossover junction endodeoxyribonuclease RuvC compare
IAI47_18420 -1.2 -7.9 class I adenylate cyclase compare
IAI47_12645 -1.2 -3.5 porin OmpA compare
IAI47_00460 -1.2 -1.7 glutamate--ammonia ligase compare
IAI47_13760 -1.2 -2.4 succinate dehydrogenase membrane anchor subunit compare
IAI47_20600 -1.2 -1.8 hypothetical protein compare
IAI47_06120 -1.2 -2.9 YfcZ/YiiS family protein compare
IAI47_06135 -1.2 -2.9 phosphohistidine phosphatase SixA compare
IAI47_13770 -1.2 -7.1 citrate synthase compare
IAI47_12880 -1.1 -8.2 formate C-acetyltransferase compare
IAI47_13885 -1.1 -1.5 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_03195 -1.1 -2.7 cell division protein FtsP compare
IAI47_16085 -1.1 -1.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_00375 -1.1 -9.5 ribose operon transcriptional repressor RbsR compare
IAI47_04895 -1.1 -3.4 pyridoxine 5'-phosphate synthase compare
IAI47_00445 -1.1 -6.6 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_05035 -1.0 -2.1 nucleoside-diphosphate kinase compare
IAI47_18400 -1.0 -1.9 tyrosine recombinase XerC compare
IAI47_21765 -1.0 -1.7 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_04705 -1.0 -1.2 hypothetical protein compare
IAI47_18490 -1.0 -3.0 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_10340 -1.0 -4.0 mannose-6-phosphate isomerase compare
IAI47_04775 -1.0 -2.0 SIR2 family protein compare
IAI47_12920 -1.0 -2.3 thioredoxin-disulfide reductase compare
IAI47_12650 -1.0 -3.7 macrodomain Ter protein MatP compare
IAI47_07480 -1.0 -1.9 hypothetical protein compare
IAI47_12655 -1.0 -6.5 Lon protease family protein compare
IAI47_05125 -0.9 -2.1 hypothetical protein compare
IAI47_02040 -0.9 -4.8 peptidylprolyl isomerase compare
IAI47_06655 -0.9 -2.3 1-phosphofructokinase compare
IAI47_00675 -0.9 -7.4 glycosyltransferase family 9 protein compare
IAI47_06915 -0.9 -5.4 outer membrane assembly protein AsmA compare
IAI47_21610 -0.9 -5.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_00330 -0.9 -6.6 low affinity potassium transporter Kup compare
IAI47_07165 -0.9 -1.4 exodeoxyribonuclease I compare
IAI47_06245 -0.9 -2.1 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_03590 -0.9 -5.5 YggT family protein compare
IAI47_17165 -0.9 -5.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_13180 -0.9 -4.2 manganese-binding transcriptional regulator MntR compare
IAI47_14775 -0.9 -2.7 transcriptional regulator NrdR compare
IAI47_05050 -0.8 -3.7 cytoskeleton protein RodZ compare
IAI47_11500 -0.8 -2.0 type VI secretion system tip protein VgrG compare
IAI47_08590 -0.8 -2.0 hypothetical protein compare
IAI47_01750 -0.8 -3.6 glycerol-3-phosphate dehydrogenase compare
IAI47_11995 -0.8 -2.5 beta-N-acetylhexosaminidase compare
IAI47_07350 -0.8 -0.6 hypothetical protein compare
IAI47_02605 -0.8 -5.1 protease modulator HflC compare
IAI47_00455 -0.8 -4.8 nitrogen regulation protein NR(II) compare
IAI47_11655 -0.8 -1.6 hypothetical protein compare
IAI47_19295 -0.8 -1.9 hypothetical protein compare
IAI47_00670 -0.8 -6.4 sugar glycosyltransferase compare
IAI47_06235 -0.8 -4.0 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_00110 -0.8 -4.2 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_06565 -0.8 -1.0 YejL family protein compare
IAI47_15155 -0.8 -2.3 DUF943 family protein compare
IAI47_16080 -0.8 -4.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_11515 -0.8 -1.1 hypothetical protein compare
IAI47_02625 -0.8 -5.8 ribonuclease R compare
IAI47_10775 -0.8 -3.1 ribonuclease T compare
IAI47_13925 -0.8 -1.2 tRNA-Met compare
IAI47_04865 -0.8 -1.2 SoxR-reducing system protein RseC compare
IAI47_06965 -0.8 -0.9 glycosyltransferase family 2 protein compare
IAI47_04805 -0.8 -3.1 outer membrane protein assembly factor BamE compare
IAI47_00410 -0.8 -5.5 molybdenum cofactor guanylyltransferase MobA compare
IAI47_14325 -0.8 -0.8 ribosome-associated protein YbcJ compare
IAI47_08485 -0.8 -4.6 pyruvate kinase compare
IAI47_06675 -0.8 -1.3 DUF1232 domain-containing protein compare
IAI47_02600 -0.8 -4.8 FtsH protease activity modulator HflK compare
IAI47_03640 -0.8 -5.5 glycosyltransferase compare
IAI47_02260 -0.8 -3.3 Zn(2+)-responsive transcriptional regulator compare
IAI47_13890 -0.8 -3.7 ROK family transcriptional regulator compare
IAI47_02850 -0.7 -4.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI47_07015 -0.7 -2.5 ABC transporter ATP-binding protein compare
IAI47_09340 -0.7 -4.0 DUF1275 domain-containing protein compare
IAI47_04830 -0.7 -2.5 autonomous glycyl radical cofactor GrcA compare
IAI47_00935 -0.7 -2.8 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_21355 -0.7 -2.0 DUF3606 domain-containing protein compare
IAI47_04835 -0.7 -4.0 ATP-dependent RNA helicase SrmB compare
IAI47_01610 -0.7 -3.0 glycerophosphodiester phosphodiesterase compare
IAI47_13485 -0.7 -2.7 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_14075 -0.7 -1.3 transcription antiterminator/RNA stability regulator CspE compare
IAI47_14595 -0.7 -5.1 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
IAI47_05845 -0.7 -2.9 hypothetical protein compare
IAI47_10840 -0.7 -2.1 pyruvate kinase PykF compare
IAI47_08445 -0.7 -0.6 Holliday junction branch migration protein RuvA compare
IAI47_09855 -0.7 -2.4 DUF2384 domain-containing protein compare
IAI47_01875 -0.7 -2.4 hypothetical protein compare
IAI47_07475 -0.7 -0.6 hypothetical protein compare
IAI47_16415 -0.7 -4.8 nucleoside hydrolase compare
IAI47_05275 -0.7 -3.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_11360 -0.7 -1.8 hypothetical protein compare
IAI47_06425 -0.7 -4.1 GNAT family N-acetyltransferase compare
IAI47_02750 -0.7 -5.5 class 1 fructose-bisphosphatase compare
IAI47_10545 -0.7 -1.3 hypothetical protein compare
IAI47_19685 -0.7 -1.6 hypothetical protein compare
IAI47_01830 -0.7 -4.7 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_08960 -0.7 -3.5 bifunctional nicotinamidase/pyrazinamidase compare
IAI47_16195 -0.7 -3.8 transaldolase compare
IAI47_03240 -0.7 -2.0 TonB system transport protein ExbD compare
IAI47_13750 -0.6 -2.2 succinate dehydrogenase iron-sulfur subunit compare
IAI47_00450 -0.6 -4.4 nitrogen regulation protein NR(I) compare
IAI47_15595 -0.6 -0.7 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_03680 -0.6 -3.9 transketolase compare
IAI47_00870 -0.6 -0.5 50S ribosomal protein L31 compare
IAI47_14590 -0.6 -5.1 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
IAI47_09635 -0.6 -2.5 hypothetical protein compare
IAI47_14805 -0.6 -2.9 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_04750 -0.6 -1.3 hypothetical protein compare
IAI47_05690 -0.6 -2.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50 across organisms