Experiment set7IT086 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5833 -3.8 -2.0 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_5029 -2.5 -3.3 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_5962 -2.4 -4.5 hypothetical protein compare
Pf1N1B4_5294 -2.1 -1.8 hypothetical protein compare
Pf1N1B4_3849 -2.0 -2.4 Transcriptional regulator, GntR family compare
Pf1N1B4_5330 -2.0 -1.0 hypothetical protein compare
Pf1N1B4_2177 -2.0 -1.2 FIG00953342: hypothetical protein compare
Pf1N1B4_4317 -1.9 -1.0 DNA/RNA non-specific endonuclease compare
Pf1N1B4_284 -1.9 -10.9 Universal stress protein family compare
Pf1N1B4_1627 -1.9 -3.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_5756 -1.8 -4.3 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf1N1B4_2880 -1.8 -8.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_4331 -1.8 -2.1 Transporter, LysE family compare
Pf1N1B4_5107 -1.8 -3.2 Putative collagenase compare
Pf1N1B4_3546 -1.8 -0.9 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_2545 -1.7 -9.0 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1724 -1.7 -1.2 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_899 -1.7 -1.3 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_345 -1.6 -1.3 Integration host factor beta subunit compare
Pf1N1B4_339 -1.6 -1.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_2338 -1.6 -4.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_236 -1.6 -4.8 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_5725 -1.6 -1.1 High-affinity iron permease compare
Pf1N1B4_5030 -1.6 -3.4 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_4699 -1.6 -1.1 Multidrug translocase MdfA compare
Pf1N1B4_919 -1.5 -3.2 hypothetical protein compare
Pf1N1B4_12 -1.5 -4.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_3868 -1.5 -2.5 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_4721 -1.5 -2.1 Nuclease inhibitor compare
Pf1N1B4_847 -1.5 -5.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_3976 -1.5 -4.9 Transmembrane regulator protein PrtR compare
Pf1N1B4_4299 -1.5 -1.0 sensor histidine kinase compare
Pf1N1B4_3830 -1.5 -1.0 CrfX protein compare
Pf1N1B4_3985 -1.5 -2.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_1534 -1.5 -9.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_15 -1.5 -3.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_3895 -1.4 -2.4 hypothetical protein compare
Pf1N1B4_742 -1.4 -4.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2280 -1.4 -6.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_5611 -1.4 -2.4 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_3091 -1.4 -3.4 Membrane-associated zinc metalloprotease compare
Pf1N1B4_4833 -1.4 -2.8 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2549 -1.4 -4.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2401 -1.4 -0.7 Lipoprotein, putative compare
Pf1N1B4_232 -1.4 -0.8 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3184 -1.3 -2.0 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_5322 -1.3 -3.7 hypothetical protein compare
Pf1N1B4_3551 -1.3 -4.8 COG0613, Predicted metal-dependent phosphoesterases (PHP family) compare
Pf1N1B4_4851 -1.3 -2.7 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_4700 -1.3 -2.6 FIG00956898: hypothetical protein compare
Pf1N1B4_5370 -1.3 -2.6 hypothetical protein compare
Pf1N1B4_4678 -1.3 -2.6 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_201 -1.3 -1.8 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_1408 -1.3 -3.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_4476 -1.3 -2.8 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_4253 -1.3 -2.4 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_5031 -1.3 -1.9 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_1067 -1.3 -2.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2857 -1.3 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_1624 -1.3 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_3927 -1.2 -1.7 hypothetical protein compare
Pf1N1B4_1060 -1.2 -3.0 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_2359 -1.2 -3.5 Chemotaxis signal transduction protein compare
Pf1N1B4_4715 -1.2 -2.0 Transcriptional regulator compare
Pf1N1B4_695 -1.2 -2.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_4834 -1.2 -4.0 Sensor histidine kinase compare
Pf1N1B4_1328 -1.2 -2.0 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_1725 -1.2 -5.7 Sulfate transport system permease protein CysW compare
Pf1N1B4_3715 -1.2 -3.5 Cobalamin synthase compare
Pf1N1B4_5665 -1.2 -2.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2536 -1.2 -6.0 Probable two-component sensor, near polyamine transporter compare
Pf1N1B4_5357 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_373 -1.2 -0.8 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_4592 -1.2 -0.8 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_1626 -1.2 -3.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_4550 -1.2 -1.6 beta-ketoacyl synthase, putative compare
Pf1N1B4_418 -1.2 -4.9 Molybdenum cofactor biosynthesis protein MoaA compare
Pf1N1B4_4835 -1.2 -0.7 Carbon starvation protein A compare
Pf1N1B4_5013 -1.2 -1.6 Cointegrate resolution protein T compare
Pf1N1B4_5666 -1.2 -0.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_777 -1.2 -5.1 Membrane protein glpM compare
Pf1N1B4_1590 -1.2 -1.6 Histidine utilization repressor compare
Pf1N1B4_2547 -1.2 -2.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1262 -1.2 -4.4 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_6 -1.2 -2.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5109 -1.2 -2.4 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_3772 -1.2 -3.0 Glutaredoxin compare
Pf1N1B4_1726 -1.1 -3.1 Sulfate transport system permease protein CysT compare
Pf1N1B4_3038 -1.1 -4.2 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_2252 -1.1 -2.6 Organosulfonate utilization protein SsuF compare
Pf1N1B4_4318 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_3468 -1.1 -0.7 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_107 -1.1 -3.0 FIG00857858: hypothetical protein compare
Pf1N1B4_2184 -1.1 -3.8 Autolysis response regulater LytR compare
Pf1N1B4_2773 -1.1 -3.0 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_3461 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_34 -1.1 -0.7 Xanthine permease compare
Pf1N1B4_4912 -1.1 -3.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_5133 -1.1 -2.8 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_4417 -1.1 -2.2 Transcriptional regulator compare
Pf1N1B4_106 -1.1 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4957 -1.1 -0.9 Transcriptional regulator, TetR family compare
Pf1N1B4_4551 -1.1 -2.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_2335 -1.1 -0.7 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf1N1B4_515 -1.1 -1.9 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf1N1B4_4445 -1.1 -3.4 acetyltransferase, GNAT family compare
Pf1N1B4_4293 -1.1 -2.3 hypothetical protein compare
Pf1N1B4_4540 -1.1 -2.2 Uncharacterized protein ImpJ/VasE compare
Pf1N1B4_4358 -1.0 -1.5 Acetyltransferase, GNAT family compare
Pf1N1B4_81 -1.0 -1.5 Putative sulfate permease compare
Pf1N1B4_3411 -1.0 -2.3 FIG00959431: hypothetical protein compare
Pf1N1B4_5746 -1.0 -2.1 FIG139552: Putative protease compare
Pf1N1B4_1113 -1.0 -3.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_5371 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_733 -1.0 -0.6 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_5729 -1.0 -4.9 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_68 -1.0 -1.5 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf1N1B4_715 -1.0 -3.2 Iron-regulated protein A precursor compare
Pf1N1B4_3956 -1.0 -1.9 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf1N1B4_2337 -1.0 -2.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2244 -1.0 -2.3 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_1081 -1.0 -2.4 Ribosome hibernation protein YhbH compare
Pf1N1B4_3820 -1.0 -5.7 2-methylcitrate synthase (EC 2.3.3.5) compare
Pf1N1B4_1691 -1.0 -0.6 hypothetical protein compare
Pf1N1B4_3692 -1.0 -2.4 Chaperone protein HtpG compare
Pf1N1B4_4134 -1.0 -2.8 Na+ driven multidrug efflux pump compare
Pf1N1B4_412 -1.0 -1.9 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_4960 -0.9 -2.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_3758 -0.9 -2.4 Patatin compare
Pf1N1B4_5772 -0.9 -2.5 Heme d1 biosynthesis protein NirJ compare
Pf1N1B4_3625 -0.9 -2.1 Flagellar synthesis regulator FleN compare
Pf1N1B4_5864 -0.9 -1.1 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_131 -0.9 -0.6 hypothetical protein compare
Pf1N1B4_2741 -0.9 -2.2 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf1N1B4_3965 -0.9 -1.1 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_4004 -0.9 -2.3 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_5804 -0.9 -2.9 Muconolactone isomerase (EC 5.3.3.4) compare
Pf1N1B4_5745 -0.9 -2.3 FIG139928: Putative protease compare
Pf1N1B4_2112 -0.9 -6.1 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_3508 -0.9 -2.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_4083 -0.9 -1.5 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_5751 -0.9 -2.8 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR compare
Pf1N1B4_2872 -0.9 -4.9 FIG00955330: hypothetical protein compare
Pf1N1B4_1103 -0.9 -3.4 Rare lipoprotein A compare
Pf1N1B4_4931 -0.9 -1.5 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_79 -0.9 -3.7 Lactoylglutathione lyase and related lyases compare
Pf1N1B4_4065 -0.9 -2.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3909 -0.9 -0.8 Cell division inhibitor-related protein compare
Pf1N1B4_2147 -0.9 -2.2 Putrescine utilization regulator compare
Pf1N1B4_2392 -0.9 -2.7 Cytochrome c556 compare
Pf1N1B4_1863 -0.9 -5.1 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Pf1N1B4_4602 -0.9 -1.4 Transcriptional regulators, LysR family compare
Pf1N1B4_1533 -0.9 -4.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2225 -0.9 -5.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_2750 -0.9 -2.6 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2035 -0.9 -3.4 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_5644 -0.9 -1.9 amino acid ABC transporter, permease protein compare
Pf1N1B4_2339 -0.9 -1.2 COG1872 compare
Pf1N1B4_1059 -0.9 -0.6 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_4568 -0.9 -0.8 FIG00793915: hypothetical protein compare
Pf1N1B4_2303 -0.9 -4.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_230 -0.9 -1.9 FIG00953472: hypothetical protein compare
Pf1N1B4_485 -0.9 -0.6 L-lysine permease compare
Pf1N1B4_4028 -0.9 -2.4 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1831 -0.9 -2.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_5735 -0.9 -4.7 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) compare
Pf1N1B4_5860 -0.8 -1.4 Two-component response regulator compare
Pf1N1B4_2722 -0.8 -2.5 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) compare
Pf1N1B4_5022 -0.8 -3.5 hypothetical protein compare
Pf1N1B4_4433 -0.8 -2.1 FIG035246: DoxX family protein compare
Pf1N1B4_2009 -0.8 -1.7 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_3372 -0.8 -1.8 FIG00962464: hypothetical protein compare
Pf1N1B4_1632 -0.8 -2.9 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf1N1B4_3446 -0.8 -0.8 Putative GTPases (G3E family) compare
Pf1N1B4_4506 -0.8 -1.3 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_5447 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_4201 -0.8 -1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_2003 -0.8 -2.7 FIG00956226: hypothetical protein compare
Pf1N1B4_814 -0.8 -0.6 Transcriptional regulator, PadR family compare
Pf1N1B4_4055 -0.8 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_3982 -0.8 -2.8 FIG00953347: hypothetical protein compare
Pf1N1B4_6032 -0.8 -2.5 Ribose operon repressor compare
Pf1N1B4_2437 -0.8 -3.1 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf1N1B4_1266 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_237 -0.8 -1.3 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_3959 -0.8 -2.8 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) compare
Pf1N1B4_1159 -0.8 -1.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_198 -0.8 -0.6 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_2548 -0.8 -1.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_4824 -0.8 -1.7 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_7 -0.8 -1.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_3700 -0.8 -2.6 Putative permease often clustered with de novo purine synthesis compare
Pf1N1B4_2874 -0.8 -1.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_689 -0.8 -1.9 FIG00954888: hypothetical protein compare
Pf1N1B4_3206 -0.8 -2.3 Short chain dehydrogenase compare
Pf1N1B4_3483 -0.8 -2.9 Transcriptional regulatory protein PhoP compare
Pf1N1B4_2936 -0.8 -4.9 Putative sulfate permease compare
Pf1N1B4_5709 -0.8 -2.2 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_5442 -0.8 -2.8 hypothetical protein compare
Pf1N1B4_3214 -0.8 -2.7 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare


Specific Phenotypes

For 1 genes in this experiment

For anaerobic Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For anaerobic Sodium pyruvate across organisms