Experiment set7IT085 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_4833 -2.8 -3.8 DNA-binding response regulator, LuxR family compare
Pf1N1B4_4476 -2.4 -4.0 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_284 -2.0 -12.9 Universal stress protein family compare
Pf1N1B4_412 -1.9 -2.6 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_5029 -1.9 -3.5 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_5665 -1.9 -3.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_5745 -1.8 -2.7 FIG139928: Putative protease compare
Pf1N1B4_2880 -1.8 -9.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_3985 -1.8 -2.7 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_2545 -1.7 -9.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_15 -1.7 -3.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_5756 -1.7 -3.5 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf1N1B4_4745 -1.6 -1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_4721 -1.6 -3.2 Nuclease inhibitor compare
Pf1N1B4_2338 -1.6 -5.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_847 -1.6 -4.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_3976 -1.6 -5.3 Transmembrane regulator protein PrtR compare
Pf1N1B4_1408 -1.6 -3.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_5725 -1.5 -1.2 High-affinity iron permease compare
Pf1N1B4_4295 -1.5 -2.2 FIG00954434: hypothetical protein compare
Pf1N1B4_1725 -1.5 -8.6 Sulfate transport system permease protein CysW compare
Pf1N1B4_5729 -1.5 -4.5 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_5611 -1.5 -2.5 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_5628 -1.5 -3.4 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf1N1B4_688 -1.5 -3.3 FIG00955483: hypothetical protein compare
Pf1N1B4_448 -1.5 -1.8 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_2549 -1.4 -4.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2280 -1.4 -5.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3993 -1.4 -3.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_2272 -1.4 -1.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1724 -1.4 -1.9 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_1113 -1.4 -4.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1624 -1.4 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_3191 -1.4 -0.8 FIG00953505: hypothetical protein compare
Pf1N1B4_4834 -1.4 -5.2 Sensor histidine kinase compare
Pf1N1B4_235 -1.4 -5.0 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_3868 -1.4 -2.9 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_12 -1.4 -3.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_1534 -1.4 -9.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1067 -1.4 -2.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_236 -1.4 -3.8 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_5763 -1.3 -2.4 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_742 -1.3 -4.6 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_230 -1.3 -2.4 FIG00953472: hypothetical protein compare
Pf1N1B4_22 -1.3 -4.0 Transcriptional regulator, TetR family compare
Pf1N1B4_3785 -1.3 -1.6 FOG: Ankyrin repeat compare
Pf1N1B4_5735 -1.3 -6.1 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) compare
Pf1N1B4_16 -1.3 -2.5 Cys regulon transcriptional activator CysB compare
Pf1N1B4_4317 -1.3 -1.3 DNA/RNA non-specific endonuclease compare
Pf1N1B4_2112 -1.3 -8.8 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_6 -1.3 -1.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_345 -1.3 -1.2 Integration host factor beta subunit compare
Pf1N1B4_4636 -1.2 -2.5 TPR domain protein in aerotolerance operon compare
Pf1N1B4_1262 -1.2 -4.0 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_3091 -1.2 -5.1 Membrane-associated zinc metalloprotease compare
Pf1N1B4_1819 -1.2 -3.1 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_3636 -1.2 -1.6 FIG00953562: hypothetical protein compare
Pf1N1B4_429 -1.2 -1.1 FIG00964214: hypothetical protein compare
Pf1N1B4_777 -1.2 -5.9 Membrane protein glpM compare
Pf1N1B4_5746 -1.1 -3.4 FIG139552: Putative protease compare
Pf1N1B4_5780 -1.1 -4.0 Nitrous oxide reductase maturation protein NosD compare
Pf1N1B4_2794 -1.1 -2.2 FIG00953595: hypothetical protein compare
Pf1N1B4_5137 -1.1 -4.5 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf1N1B4_4776 -1.1 -2.4 Nicotinamidase (EC 3.5.1.19) compare
Pf1N1B4_5666 -1.1 -0.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_5740 -1.1 -2.3 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
Pf1N1B4_4835 -1.1 -0.7 Carbon starvation protein A compare
Pf1N1B4_5758 -1.1 -3.7 Nitric oxide reductase activation protein NorD compare
Pf1N1B4_5736 -1.1 -3.6 Nitrate/nitrite transporter compare
Pf1N1B4_5357 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_4019 -1.1 -2.6 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family compare
Pf1N1B4_1726 -1.1 -3.2 Sulfate transport system permease protein CysT compare
Pf1N1B4_2039 -1.1 -0.7 hypothetical protein compare
Pf1N1B4_3972 -1.1 -2.4 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_418 -1.1 -5.3 Molybdenum cofactor biosynthesis protein MoaA compare
Pf1N1B4_5030 -1.1 -2.2 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_3783 -1.1 -2.1 FIG00958237: hypothetical protein compare
Pf1N1B4_1626 -1.0 -4.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1328 -1.0 -1.7 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2621 -1.0 -2.1 PspA/IM30 family protein compare
Pf1N1B4_5772 -1.0 -3.6 Heme d1 biosynthesis protein NirJ compare
Pf1N1B4_3038 -1.0 -4.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_2303 -1.0 -5.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_967 -1.0 -1.1 hypothetical protein compare
Pf1N1B4_2536 -1.0 -4.9 Probable two-component sensor, near polyamine transporter compare
Pf1N1B4_5542 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_1511 -1.0 -0.7 FIG027190: Putative transmembrane protein compare
Pf1N1B4_1812 -1.0 -2.7 Iron siderophore sensor protein compare
Pf1N1B4_910 -1.0 -2.4 Cyanate transport protein CynX compare
Pf1N1B4_3468 -1.0 -0.7 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_2773 -1.0 -2.8 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_5682 -1.0 -1.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_1831 -1.0 -2.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2547 -1.0 -2.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_4053 -1.0 -2.8 Cold shock protein CspD compare
Pf1N1B4_4463 -1.0 -3.3 FIG00958979: hypothetical protein compare
Pf1N1B4_5306 -1.0 -2.2 hypothetical protein compare
Pf1N1B4_3625 -1.0 -2.0 Flagellar synthesis regulator FleN compare
Pf1N1B4_786 -1.0 -2.8 L-lysine permease compare
Pf1N1B4_4960 -1.0 -2.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_5753 -1.0 -1.8 putative membrane protein compare
Pf1N1B4_5071 -1.0 -1.6 FIG00959535: hypothetical protein compare
Pf1N1B4_3538 -1.0 -0.7 Transcriptional regulator, AraC family compare
Pf1N1B4_2252 -1.0 -2.3 Organosulfonate utilization protein SsuF compare
Pf1N1B4_5747 -1.0 -1.6 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_1081 -1.0 -0.7 Ribosome hibernation protein YhbH compare
Pf1N1B4_1533 -1.0 -4.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2433 -0.9 -2.5 FIG00953108: hypothetical protein compare
Pf1N1B4_2337 -0.9 -2.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2872 -0.9 -4.9 FIG00955330: hypothetical protein compare
Pf1N1B4_3445 -0.9 -3.4 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_1069 -0.9 -3.0 YrbA protein compare
Pf1N1B4_3899 -0.9 -1.9 COG0488: ATPase components of ABC transporters with duplicated ATPase domains compare
Pf1N1B4_384 -0.9 -0.6 proteinase inhibitor compare
Pf1N1B4_733 -0.9 -0.6 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_901 -0.9 -1.0 hypothetical protein compare
Pf1N1B4_4554 -0.9 -2.6 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_4932 -0.9 -2.4 Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_4201 -0.9 -1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_5779 -0.9 -0.6 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_2891 -0.9 -2.0 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_4678 -0.9 -2.0 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_2741 -0.9 -2.2 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf1N1B4_3624 -0.9 -3.1 Flagellar biosynthesis protein FlhF compare
Pf1N1B4_3831 -0.9 -2.4 CmpX compare
Pf1N1B4_3900 -0.9 -3.2 Universal stress protein family COG0589 compare
Pf1N1B4_4065 -0.9 -3.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_4172 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_5734 -0.9 -3.2 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_1756 -0.9 -1.2 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_4111 -0.9 -0.8 Panthothenate synthetase compare
Pf1N1B4_2739 -0.9 -1.4 acetyltransferase, GNAT family compare
Pf1N1B4_3206 -0.9 -2.8 Short chain dehydrogenase compare
Pf1N1B4_1613 -0.9 -1.4 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_5334 -0.9 -1.0 hypothetical protein compare
Pf1N1B4_199 -0.9 -2.3 FIG049111: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_564 -0.9 -1.7 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Pf1N1B4_364 -0.9 -2.9 Rhodanese domain protein UPF0176 compare
Pf1N1B4_3632 -0.9 -3.3 Flagellar motor rotation protein MotB compare
Pf1N1B4_5460 -0.9 -2.8 TolA protein compare
Pf1N1B4_3434 -0.9 -3.8 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_4671 -0.9 -1.9 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_5136 -0.8 -3.1 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_131 -0.8 -0.6 hypothetical protein compare
Pf1N1B4_2925 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_1590 -0.8 -1.5 Histidine utilization repressor compare
Pf1N1B4_5242 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_515 -0.8 -1.9 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf1N1B4_1140 -0.8 -2.9 Iron-uptake factor PiuC compare
Pf1N1B4_4299 -0.8 -1.5 sensor histidine kinase compare
Pf1N1B4_198 -0.8 -0.8 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_4429 -0.8 -1.7 No significant database matches compare
Pf1N1B4_996 -0.8 -2.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_4926 -0.8 -3.1 ATPase components of various ABC-type transport systems, contain duplicated ATPase compare
Pf1N1B4_2437 -0.8 -3.0 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf1N1B4_5059 -0.8 -2.1 Transcriptional regulator, LysR family compare
Pf1N1B4_2184 -0.8 -3.5 Autolysis response regulater LytR compare
Pf1N1B4_4741 -0.8 -1.6 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf1N1B4_1583 -0.8 -2.2 Histidine ABC transporter, ATP-binding protein (TC 3.A.1) compare
Pf1N1B4_4494 -0.8 -1.0 hypothetical protein compare
Pf1N1B4_3825 -0.8 -1.8 FIG00959101: hypothetical protein compare
Pf1N1B4_2484 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_104 -0.8 -2.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_1845 -0.8 -1.9 FIG00954395: hypothetical protein compare
Pf1N1B4_4531 -0.8 -2.4 FIG01221261: hypothetical protein compare
Pf1N1B4_4318 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_3687 -0.8 -2.2 FIG00953885: hypothetical protein compare
Pf1N1B4_4477 -0.8 -2.3 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_188 -0.8 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_182 -0.8 -1.7 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
Pf1N1B4_4438 -0.8 -0.9 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_128 -0.8 -1.4 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_4143 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_3909 -0.8 -0.7 Cell division inhibitor-related protein compare
Pf1N1B4_4761 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_4192 -0.8 -1.4 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_3799 -0.8 -2.3 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Pf1N1B4_609 -0.8 -1.7 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_3696 -0.8 -5.9 FIG00955360: hypothetical protein compare
Pf1N1B4_3849 -0.7 -2.0 Transcriptional regulator, GntR family compare
Pf1N1B4_1370 -0.7 -1.4 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_68 -0.7 -1.2 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf1N1B4_51 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_5997 -0.7 -2.0 Taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_1806 -0.7 -2.7 FIG00953743: hypothetical protein compare
Pf1N1B4_2857 -0.7 -1.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_5139 -0.7 -2.8 Gamma-aminobutyrate permease compare
Pf1N1B4_2048 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_2643 -0.7 -0.7 Predicted zinc-binding protein compare
Pf1N1B4_3001 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_2225 -0.7 -4.4 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_1704 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_1588 -0.7 -2.5 hypothetical protein compare
Pf1N1B4_3222 -0.7 -0.5 Ferredoxin compare
Pf1N1B4_53 -0.7 -2.4 hypothetical protein compare
Pf1N1B4_673 -0.7 -2.2 MoxR-like ATPases compare
Pf1N1B4_647 -0.7 -3.2 hypothetical protein compare
Pf1N1B4_2674 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_4181 -0.7 -0.7 FIG00957123: hypothetical protein compare
Pf1N1B4_875 -0.7 -0.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare


Specific Phenotypes

For 1 genes in this experiment

For anaerobic Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For anaerobic Sodium pyruvate across organisms